Phylogenetic relationships among prokaryotic and eukaryotic catalases

Seventy-four catalase protein sequences, including 29 bacterial, 8 fungal, 7 animal, and 30 plant sequences, were compiled, and 70 were used for phylogenetic reconstruction. The core of the resulting tree revealed unique, separate groups of plant and animal catalases, two groups of fungal catalases, and three groups of bacterial catalases. The only overlap of kingdoms occurred within one branch and involved fungal and bacterial large-subunit enzymes. The other fungal branch was closely linked to the group of animal enzymes. Group I bacterial catalases were more closely related to the plant enzymes and contained such diverse taxa as the Gram-positive Listeria seeligeri, Deinocococcus radiodurans, and gamma-proteobacteria. Group III bacterial sequences were more closely related to fungal and animal sequences and included enzymes from a broad range of bacteria including high- and low-GC Gram positives, proteobacteria, and a bacteroides species. Group II was composed of large-subunit catalases from diverse sources including Gram positives (low-GC Bacilli and high-GC Mycobacteria), proteobacteria, and species of the filamentous fungus Aspergillus. These data can be interpreted in terms of two gene duplication events that produced a minimum of three catalase gene family members that subsequently evolved in response to environmental demands. Horizontal gene transfer may have been responsible for the group II mixture of bacterial and fungal large-subunit catalases.      

A new genus of large primate from the Late Oligocene of Lothidok, Turkana District, Kenya

The species Proconsul (Xenopithecus) hamiltoni was based on two weathered molars in a maxillary fragment from the Erageleit beds, Lothidok, Turkana District, Kenya. New fossils from Lothidok show a unique suite of features indicating generic distinction of this taxon from other known large early catarrhines. A new generic diagnosis is given. The new genus, although still poorly known, may be the first Oligocene hominoid from East Africa. It retains many primitive features, but the few derived ones hint that it may be related to the Afropithecus group.     

Optical topometry and machine learning to rapidly phenotype stomatal patterning traits for maize QTL mapping

Stomata are adjustable pores on leaf surfaces that regulate the tradeoff of CO₂ uptake with water vapor loss, thus having critical roles in controlling photosynthetic carbon gain and plant water use. The lack of easy, rapid methods for phenotyping epidermal cell traits have limited discoveries about the genetic basis of stomatal patterning. A high-throughput epidermal cell phenotyping pipeline is presented here and used for quantitative trait loci (QTL) mapping in field-grown maize (Zea mays). The locations and sizes of stomatal complexes and pavement cells on images acquired by an optical topometer from mature leaves were automatically determined. Computer estimated stomatal complex density (SCD; R² = 0.97) and stomatal complex area (SCA; R² = 0.71) were strongly correlated with human measurements. Leaf gas exchange traits were genetically correlated with the dimensions and proportions of stomatal complexes (r_g = 0.39–0.71) but did not correlate with SCD. Heritability of epidermal traits was moderate to high (h² = 0.42–0.82) across two field seasons. Thirty-six QTL were consistently identified for a given trait in both years. Twenty-four clusters of overlapping QTL for multiple traits were identified, with univariate versus multivariate single marker analysis providing evidence consistent with pleiotropy in multiple cases. Putative orthologs of genes known to regulate stomatal patterning in Arabidopsis (Arabidopsis thaliana) were located within some, but not all, of these regions. This study demonstrates how discovery of the genetic basis for stomatal patterning can be accelerated in maize, a C₄ model species where these processes are poorly understood.

Optical topometry and machine learning tools allow assessment of epidermal cell patterning and analysis of its genetic architecture alongside leaf photosynthetic gas exchange in maize.     

Construction and identification of a cDNA clone for human type II procollagen mRNA.

Double-stranded cDNA was constructed for poly(A)-containing RNA isolated from foetal human articular cartilage known to contain small amounts of pro alpha 1 (II) collagen mRNA. A 585 base pair PstI-EcoRI cDNA fragment was isolated and cloned into plasmid pBR322. A resulting recombinant plasmid pHCAR1 was shown to hybridize specifically to a 5.4 kilobase mRNA in cartilage but not in calvarial RNA. Definite identification of clone pHCAR1 was based on sequence analysis; marked homology with the corresponding chick gene and complete agreement with the human gene sequences available were observed.     

UDP-glucuronyltransferase activity exhibits two developmental groups in liver from foetal rhesus monkeys.

UDP-glucuronyltransferase was assayed in liver from adult rhesus monkeys and foetuses during late gestation. Activities toward 2-aminophenol, 5-hydroxytryptamine, 1-naphthol and 4-nitrophenol in the foetal liver ranged from 46 to 114% of adult values, whereas activities toward bilirubin, oestradiol and testosterone were less than 5% of adult values. This suggests that in primates UDP-glucuronyltransferase develops differentially in two clusters analogous to that in the rat.     

Morphology of Afropithecus turkanensis from Kenya

Forty-six specimens of a large Miocene hominoid, Afropithecus turkanensis, recently recovered from northern Kenya preserve many morphological details that are described. The specimens include cranial, mandibular, and postcranial parts. They are compared briefly with other Miocene hominoids. It is suggested that Afropithecus may have affinities with Heliopithecus, Kenyapithecus, and the large hominoid from Moroto and Napak, although it is noted that the comparative material is limited in the number of common anatomical parts preserved.     

Morphology of Turkanapithecus kalakolensis from Kenya

The type specimen of Turkanapithecus kalakolensis recently recovered from northern Kenya preserves a partial cranium and mandible. This specimen, together with postcranial elements that are probably associated with it, and two additional specimens are described. The collection is compared with other Miocene hominoids.