Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants

Background  

Carbon and nitrogen are two signals that influence plant growth and development. It is known that carbon- and nitrogen-signaling pathways influence one another to affect gene expression, but little is known about which genes are regulated by interactions between carbon and nitrogen signaling or the mechanisms by which the different pathways interact.     

Inertial sensor-based knee flexion/extension angle estimation

A new method for estimating knee joint flexion/extension angles from segment acceleration and angular velocity data is described. The approach uses a combination of Kalman filters and biomechanical constraints based on anatomical knowledge. In contrast to many recently published methods, the proposed approach does not make use of the earth's magnetic field and hence is insensitive to the complex field distortions commonly found in modern buildings. The method was validated experimentally by calculating knee angle from measurements taken from two IMUs placed on adjacent body segments. In contrast to many previous studies which have validated their approach during relatively slow activities or over short durations, the performance of the algorithm was evaluated during both walking and running over 5 minute periods. Seven healthy subjects were tested at various speeds from 1 to 5 mile/h. Errors were estimated by comparing the results against data obtained simultaneously from a 10 camera motion tracking system (Qualysis). The average measurement error ranged from 0.7 degrees for slow walking (1 mph) to 3.4 degrees for running (5 mph). The joint constraint used in the IMU analysis was derived from the Qualysis data. Limitations of the method, its clinical application and its possible extension are discussed.     

Crystalline Cellulose in Hydrated Primary Cell Walls of Three Monocotyledons and One Dicotyledon

The molecular ordering of cellulose, including its crystallinity,in the unlignified primary cell walls of three monocotyledons(Italian ryegrass, pineapple, and onion) and one dicotyledon(cabbage) was characterized by solid-state ¹³C NMR spectroscopy.These species were chosen because their primary cell walls havedifferent non-cellulosic polysaccharides and this may affectthe molecular ordering of cellulose. Values of the proton rotating-framerelaxation [T_1p(H)] and spin-spin relaxation [T₂(H)] time constantsshowed that the cellulose in the cell walls of all four specieswas in a crystalline rather than an amorphous state. Furthermore,a resolution enhancement procedure showed that the triclinic(I) and the monoclinic (I_rß) crystal forms of cellulosewere present in similar proportions in these cell walls. However,the calculated cross-sectional dimensions of the cellulose crystallitesvaried among the cell walls (in the range 2–3 nm): thelargest were in the Italian ryegrass, the smallest were in theonion and cabbage, and those of intermediate size were in thepineapple. The crystallite dimensions may thus be affected bythe non-cellulosic polysaccha-ride compositions of the cellwalls. ⁴Present address: Food Science Postgraduate Programme, Departmentof Chemistry, The University of Auckland, Private Bag 92019,Auckland, New Zealand.     

Virus Aggregation as the Cause of the Non-neutralizable Persistent Fraction

The non-neutralizable or persistent fraction of virus populations has been found to be caused by aggregated virus. Detailed investigation was performed with the prototype strain of echovirus type 4 (Pesascek), as this virus is notorious for its large non-neutralizable fraction. When Pesascek virus was clarified by low-speed centrifugation, homologous antiserum hardly neutralized the virus. However, when the virus was filtered through membranes having a porosity only twice the diameter of the virus, monodispersed virus was obtained which was efficiently neutralized. Serum titers were up to 1,000 times higher if the neutralization test was carried out with monodispersed virus. Virus in non-neutralizable aggregates was found to constitute 30% of the infective units of unfiltered Pesascek virus but only 0.1% of the antigenically related DuToit strain. This explains why DuToit strain has been a more satisfactory indicator strain for detecting type 4 antibodies, regardless of the echo 4 strain used for inducing the antibodies. Clarified suspensions and ultrafiltrates of viruses belonging to the picorna-, reo-, myxo-, adeno-, herpes-, and poxvirus groups were studied. Clarified suspensions yielded persistent fractions of 0.005% for poliovirus, of 0.1% for reovirus, of 0.6% for influenza virus, of <0.001% for adenovirus, of 0.06% for herpesvirus, and of 10 to 30% for vaccinia virus. In all cases the persistent fractions were removed by membrane filters which had a pore diameter no larger than twice that of the virus under test, and the high concentration of virus in each ultrafiltrate was completely neutralized by antiserum.     

Conservation planning on a budget: a “resource light” method for mapping priorities at a landscape scale?

Conservation projects may be reluctant to attempt Systematic Conservation Planning because existing methods are often prohibitive in the time, money, data, and expertise they require. We tried to develop a “resource light” method for Systematic Conservation Planning and applied it to the Ewaso Ngiro Landscape of central Kenya. Over a 6-month preparation period and 1-week participatory workshop, we used expert assessments to select focal biodiversity features, set quantitative targets for these, map their current distribution, vulnerability, potential for recovery, and conservation costs, and, finally, map cross-feature conservation priorities. Preparation for and facilitation of the workshop required time investment by one part-time workshop coordinator, eight workshop committee members, six ecosystem experts, and two GIS technicians. Total time investment was approximately 56.5 person-weeks spread over facilitators and 40 workshop participants. Monetary costs for the workshop were approximately $US 42,000, excluding investments made by researchers previous to this project. Costs for a similar workshop could vary substantially, depending on need to cover salaries, international travel, food and lodging, and the number of participants. To stay within our resource constraints, we completed the exercise for only four of nine focal biodiversity features and did not negotiate trade-offs between conservation and human land-uses or use planning software to identify “optimal networks” of conservation areas. These were not considered critical for conservationists to try Systematic Conservation Planning, introduce landscape-scale conservation concepts to stakeholders, and begin implementing landscape conservation strategies. Participants agreed that further work would be needed to complete and update the planning process. Due to the lack of comparative cost data from similar planning exercises, we cannot definitively conclude that our approach was “resource light”, although we suspect it is within the constraints of most site-based conservation projects.     

The Native Wolbachia Symbionts Limit Transmission of Dengue Virus in Aedes albopictus

Background

The chikungunya (CHIK) outbreak that struck La Reunion Island in 2005 was preceded by few human cases of Dengue (DEN), but which surprisingly did not lead to an epidemic as might have been expected in a non-immune population. Both arboviral diseases are transmitted to humans by two main mosquito species, Aedes aegypti and Aedes albopictus. In the absence of the former, Ae. albopictus was the only species responsible for viral transmission on La Reunion Island. This mosquito is naturally super-infected with two Wolbachia strains, wAlbA and wAlbB. While Wolbachia does not affect replication of CHIK virus (CHIKV) in Ae. albopictus, a similar effect was not observed with DEN virus (DENV).

Methods/Principal Findings

To understand the weak vectorial status of Ae. albopictus towards DENV, we used experimental oral infections of mosquitoes from La Reunion Island to characterize the impact of Wolbachia on DENV infection. Viral loads and Wolbachia densities were measured by quantitative PCR in different organs of Ae. albopictus where DENV replication takes place after ingestion. We found that: (i) Wolbachia does not affect viral replication, (ii) Wolbachia restricts viral density in salivary glands, and (iii) Wolbachia limits transmission of DENV, as infectious viral particles were only detected in the saliva of Wolbachia-uninfected Ae. albopictus, 14 days after the infectious blood-meal.

Conclusions

We show that Wolbachia does not affect the replication of DENV in Ae. albopictus. However, Wolbachia is able to reduce viral infection of salivary glands and limit transmission, suggesting a role of Wolbachia in naturally restricting the transmission of DENV in Ae. albopictus from La Reunion Island. The extension of this conclusion to other Ae. albopictus populations should be investigated.