Structural Studies of Component of Lysoamidase Bacteriolytic Complex from <Emphasis Type="Italic">Lysobacter</Emphasis> sp. XL1

The lysoamidase bacteriolytic complex (LBC) comprising five enzymes (L1–L5) is secreted into the culture liquid by gram-negative bacterium Lysobacter sp. XL1. The medicinal agent lysoamidase has a broad-antimicrobial spectrum. Bacteriolytic protease L1 belongs to the LBC. Recombinant L1 protease of Lysobacter sp. XL1 was expressed, purified to homogeneity and crystallized. The X-ray structure of L1 at 1.35 Å resolution has been determined using the synchrotron data and the molecular replacement method. L1 protease is a thermostable whose thermal unfolding proceeds in one step without forming stable intermediates. Structural information concerning L1 will contribute to the development of new-generation antimicrobial drugs, whose application will not be accompanied by the selection of resistant microorganisms.     

Free-living scleractinian corals on reefs of the Seychelles Islands

Thirty-nine species of unattached scleractinian corals that belong to 22 genera of 9 families were found on the Seychelles reefs. Variations of the colony form of corals living on soft sediments under continuous wave action are described. Irrespective of their initial growth form and taxonomic position, corals assume a form close to spherical. Because of the worldwide deterioration of coral reefs, the adaptation to changing ecological conditions by reef-building corals needs to be studied.     

Fertile asymmetric somatic hybrids between Lycopersicon esculentum Mill. and Lycopersicon peruvianum var. dentatum Dun.

Summary Thirteen nuclear asymmetric hybrids were regenerated under selective conditions following fusion of chlorophyll-deficient protoplasts from cultivated tomato (Lycopersicon esculentum Mill.) and -(-irradiated protoplasts from the wild species Lycopersicon peruvianum var. dentatum Dun. All hybrid plants were classified as being asymmetric based on morphological traits, chromosome numbers and isozyme patterns. The majority of the hybrids inherited Lycopersicon peruvianum var. dentatum chloroplasts. Mitochondrial DNA analysis revealed mixed mitochondria populations deriving from both parents in some of the hybrids and rearranged mitochondrial DNA in others. The asymmetric hybrids express some morphological traits that are not found in either of the parental species. Fertile F₁ plants were obtained after self-pollination of the asymmetric hybrids in four cases. The results obtained confirm the potential of asymmetric hybridization as a new source of genetic variation, and as a method for transferring of a part of genetic material from donor to recipient, and demonstrate that it is possible to produce fertile somatic hybrids by this technique.     

Geometrical configuration of 12,13-epoxy-9,11-octadecadienoic acid, a product of the reaction catalyzed by flaxseed allene oxide synthase (CYP74A)

The geometrical configuration of a short-living allene oxide reaction product that arises under the catalysis by flaxseed allene oxide synthase (CYP74A) was studied by NMR spectroscopy. The structure of (9Z,11E)-12,13-epoxyoctadeca-9,11-dienoic acid was established for it from the results of the nuclear Overhauser effect. The English version of the paper: Russian Journal of Bioorganic Chemistry, 2005, vol. 31, no. 6; see also http://www.maik.ru.     

Y97V substitution in the horse cytochrome c causes accumulation of the equilibrium intermediate

Equilibrium unfolding experiments on several mutant forms of horse heart cytochrome c were performed. By means of absorbance spectroscopy, the accumulation of an equilibrium intermediate was revealed upon unfolding of Y97V mutant protein, and its structural properties were characterized. The data obtained allow one to conclude that the equilibrium intermediate corresponds to the earliest kinetic intermediate Ic in cytochrome c folding reaction. A comparative analysis of spectral properties of unfolded states of cytochrome c induced by urea or guanidine hydrochloride is presented.     

The size and age structure of <Emphasis Type="Italic">Tridacna crocea</Emphasis> Lamarck, 1819 (Bivalvia: Tridacnidae) in the coastal area of islands of the Cön Dao Archipelago in the South China Sea

In May 2010, an expedition on the research vessel Akademik Oparin explored the populations of the clam Tridacna crocea on reefs of the Bay Canh and Cau islands of the Cön Dao Archipelago in the South China Sea. A retrospective approach using phototechniques revealed a great similarity of the vertical distribution, growth, size, and age composition of the tridacna at these islands. The maximum density of tridacna (25 ind/m²) was characteristic of a depth of about 3 m in the area of reef flat transition to reef slope. The growth of clams can be approximated by a Bertalanffy-type equation: L _t = 133.8[1 ? e ^{?0.1181(t ? 0.2596)}]. The lack of discreteness in the size and age compositions of populations of T. crocea indicated that population recruitment was quite stable over the years. This tends to maintain the population in a relatively stable condition, which enabled us to consider it as a possible reserve for the artificial restoration of populations of the species in impoverished coastal areas of Vietnam.     

Detection of propeptides of AlpA and AlpB lytic endopeptidases from Lysobacter sp. XL1 by the sandwich enzyme immunoassay based on monoclonal antibodies

Extracellular lytic endopeptidases AlpA and AlpB of the Gram-negative bacterium Lysobacter sp. XL1 have a high degree of homology and are synthesized as preproproteins consisting of a signal peptide, a propeptide, and the mature protein. In the present work, two monoclonal antibodies against the AlpA propeptide (ProA) and eleven antibodies against the AlpB propeptide (ProB) have been obtained. The affinity constants for antibodies to ProA were 2.9 × 10⁹ and 3.5 × 10⁹ M^?1, and those for antibodies to ProB were from 1.5 × 10⁸ to 2.2 × 10⁹ M^?1. The antibodies showed no immune cross-reactivity with each other and with mature forms of the enzymes. On the basis of monoclonal antibodies, a sandwich enzyme immunoassay has been developed, which makes it possible to detect these propeptides in the dissolved native form. The linear range of the detection of ProA was 1.5–100.0 ng/mL with an error of measurement of 6%, and that of the determination of ProA was 0.2–6.25 ng/mL with an error of measurement of 6%. By using the assay, propeptides ProA and ProB were detected in cell lysates of Lysobacter sp. XL1 in an amount of 1.18 ± 0.03 and 0.096 ± 0.002 ng per 1 OD540 of bacterial culture, respectively. The immunochemical assay for the detection of different forms of AlpA and AlpB can be useful in solving the problems associated with their secretion into environment.     

New Phase of Succession of the Bivalve Abra ovata Community in Sulaksii Bay, the Caspian Sea

The study of the Abra ovata community existing on the flooded area of Sulakskii Bay in the Caspian Sea since the mid-1980s was continued. It was found that the pioneer species A. ovata and Cerastoderma glaucum still dominate in the community structure and define the course of succession despite a reduction in their population density and frequency of occurrence. The species composition and structure of the modern A. ovata community and the processes occurring in it are similar to the climax stage of the A. ovata community in the Middle Caspian Sea. Both mollusk species exhibit seasonal variations in number, which are due to predation by sturgeon and natural mortality. A steady annual decrease in the sea level, retreat of the water's edge by 80–100 m, and mass burial of the shells of bivalve mollusks in the drying-out innermost part of the bay were observed.     

Comparative analysis of hair melanins by chemical and electron spin resonance methods.

Eighteen hair samples from Karakul newborn lambs with various colors were estimated for eumelanin and pheomelanin contents (Ce and Cp, respectively) by electron spin resonance (ESR) spectrometry and by high-performance liquid chromatography (HPLC). Correlation coefficients between the values estimated by the ESR and HPLC methods were 0.96, 0.93, and 0.99 for Ce, Cp, and Ce/Cp, respectively. The high correlation coefficients show that both methods fit well for estimation of relative values of these parameters. The absolute values of Ce and Ce/Cp coincide rather well when Ce is high, but considerable discrepancies appear when Ce is low. The reasons for these discrepancies are discussed. The HPLC method appears to be more sensitive for detection of low concentrations of pheomelanin, while the ESR method fits well for mass selection purposes.