Diversity of Bacterial Isolates from Commercial and Homemade Composts

The diversity of heterotrophic bacterial isolates of three commercial and two homemade composts was studied. The commercial composts were produced from poultry litter (PC), sewage sludge (SC), municipal solid waste (MC), and homemade composts (thermal compost [DC] and vermicompost [VC]) from food wastes. The taxonomic and physiological diversity of the heterotrophic culturable bacteria was assessed using phenotypic and genotypic characterization and the analysis of the partial 16S rRNA gene sequence. Composts DC and SC presented the higher genotypic diversity, as could be inferred from the number of distinct genotypic patterns observed, 28 and 21, respectively. Gram-positive bacteria, mainly Firmicutes, were predominant in all the composts. Some organisms related with taxa rarely reported in composts, as Rhodanobacter spathiphylli, Moraxella osloensis, Lysobacter, Corynebacterium, Pigmentiphaga kullae, and new taxa were also isolated. The highest relative proportion of isolates able to degrade starch was found in compost SC (>70%), to degrade gelatine in compost DC (>70%), to degrade Tween 80 in compost PC (>90%), and to degrade poly-epsilon-caprolactones in compost DC (>80%). Compost MC presented the lowest relative proportions of isolates able to degrade starch (<25%), gelatine (<20%), and poly-epsilon-caprolactone (<40%). When compared with the others, the homemade composts presented higher relative proportions of Gram-positive isolates able to inhibit the target organisms Staphylococcus aureus, Enterococcus faecalis, Escherichia coli, or Pseudomonas aeruginosa. In compost MC, none of the Gram-positive isolates was able to inhibit those targets.     

Influences of calcium deficiency and cerium on the conversion efficiency of light energy of spinach

Chloroplast absorbs light energy and transforms it into electron energy, and then converts it into active chemical energy and stable chemical energy. In the present paper, we investigated the effects of Ce(3+), which has the most significant catalytic effects and similar characteristics with Ca(2+), on light energy conversion of spinach chloroplasts under Ca(2+)-deficient stress. The results illuminated that the Hill reaction activity, electron flow both photosystems and photophosphorylation rate of spinach chloroplasts reduced significantly under Ca(2+)-deficient condition, and activities of Mg(2+)-ATPase and Ca(2+)-ATPase on the thylakoid membrane were severely inhibited. Meanwhile, the activity of Rubisco, which is the key enzyme of photosynthetic carbon assimilation, was also prohibited. However, Ce(3+) decreased the inhibition of calcium deprivation the electron transport rate, the oxygen evolution rate, the cyclic and noncyclic photophosphorylation, the activities of Mg(2+)-ATPase, Ca(2+)-ATPase and Rubisco of spinach chloroplasts. All above implied that Ca(2+)-depletion could disturb light energy conversion of chloroplasts strongly, which could be reversed by Ce(3+).     

Abiotic stresses increase plant regeneration ability

In disturbed habitats, vegetative regeneration is partly ruled by plant reserves and intrinsic growth rates. Under nutrient-limiting conditions, perennial plants tend to exhibit an increased allocation to storage organs. Under mechanically stressful conditions, plants also tend to increase allocation to below-ground biomass and storage organs. We tested whether those stresses acting differently on plants (nutrient level versus mechanical forces) led to similar effect on storage organs and regeneration ability. We measured, for an aquatic plant species, (1) the size and allocation to storage organs (stems) and (2) the regeneration ability of the storage organs. Plant stems were collected in 4 habitats ranked along a nutrient stress gradient, and having encountered null versus significant mechanical stress (flowing water). All stems were placed in similar neutral conditions and left for a period of 6 weeks before measuring their survival and growth. Dry mass allocation to the storage organ (stem) was higher in stressful habitats. Moreover, stress encountered by plants before the experiment significantly affected regeneration: stems of previously stressed plants (i.e. plants that had grown in nutrient-poor or mechanically stressful habitats) survived better than unstressed ones. Stems of plants having encountered mechanical stress before the experiment had increased growth in nutrient-rich habitats but reduced growth in the poorest habitats. These results demonstrate that regeneration could rely on the level of stress previously encountered by plants. Stress could lead to greater regeneration ability following mechanical failure. The possible mechanisms involved in these results are discussed.     

Simulation of fracture healing incorporating mechanoregulation of tissue differentiation and dispersal/proliferation of cells

Modelling the course of healing of a long bone subjected to loading has been the subject of several investigations. These have succeeded in predicting the differentiation of tissues in the callus in response to a static mechanical load and the diffusion of biological factors. In this paper an approach is presented which includes both mechanoregulation of tissue differentiation and the diffusion and proliferation of cell populations (mesenchymal stem cells, fibroblasts, chondrocytes, and osteoblasts). This is achieved in a three-dimensional poroelastic finite element model which, being poroelastic, can model the effect of the frequency of dynamic loading. Given the number of parameters involved in the simulation, a parameter variation study is reported, and final parameters are selected based on comparison with an in vivo experiment. The model predicts that asymmetric loading creates an asymmetric distribution of tissues in the callus, but only for high bending moments. Furthermore the frequency of loading is predicted to have an effect. In conclusion, a numerical algorithm is presented incorporating both mechanoregulation and evolution of cell populations, and it proves capable of predicting realistic difference in bone healing in a 3D fracture callus.     

A Zooarchaeological Test for Dietary Resource Depression at the End of the Classic Period in the Petexbatun,Guatemala

Zooarchaeological analyses of animal remains from the Petexbatun sites in the Guatemalan lowlands provide proxy evidence to test a hypothesis of dietary insufficiency during the Maya “collapse.” Ecological foraging theory and resource depression models are used to interpret animal use patterns before and after the disintegration of the Petexbatun polity at the end of the Late Classic period (around a.d. 800). Environmental failure models of the Maya “collapse” at the end of the Late Classic imply that a dietary insufficiency, and particularly a lack of animal resources, was associated with the political and social transitions of this period. However, the results of this zooarchaeological study do not support this hypothesis and point instead to very limited early reductions of only highest-ranked dietary species. The lack of evidence for specific resource depression associated directly with the period of political collapse does not support a model of environmental failure during political disintegration in the Petexbatun. Correlations are found between animal use patterns and the specifics of site size and periods of peak political activity, suggesting that small-scale resource depressions might have resulted at some sites during early periods of human population growth, site expansion, and increasing political activity.     

Spatial variation of species diversity across scales in an old-growth temperate forest of China

Species richness and abundance are the two most important diversity variables. Species abundance is additive when aggregated across spatial scale, whereas species richness is non-additive. This study analyzes the effect of spatial scale and site on species abundance and richness in a 25-ha temperate forest plot in the Changbai Mountains, northeastern China. The result shows that species abundance and richness are not only dependent on spatial scales, but also dependent on site. Species abundance responds linearly to changes of spatial scale with no intersection in different sites of the study area. However, although species richness also increases with the increase of spatial scale, there are some intersections for the different sites, suggesting that a species-rich site does not always have a high value if the spatial scale is changed. In all, with respect to additive variables, it is relatively easy to extrapolate them from one spatial scale to another spatial scale, as they and the spatial scale usually form a linear relationship. In contrast, non-additive variables are difficult to extrapolate across spatial scales, because they often respond nonlinearly to spatial scale changes. In order to extrapolate these non-additive variables across spatial scales, it is necessary to estimate the relationships between them and spatial scales. As a result, extrapolation of information among spatial scales may be possible, but very difficult, especially for non-additive variables. Because the 25-ha Changbai plot is very small compared to the extent of the world temperate forests, and the vegetation is a relatively uniform type, more such studies in other ecosystems are needed before theories and generalization about scaling effects can be formulated.     

Managing private,commercial rangelands for agricultural production and wildlife diversity in Namibia and Zambia

The private game industry has grown across Africa since the mid-20th century. While considerable research has documented wildlife production on commercial land in many eastern and southern African countries, few studies have focused specifically on the integration of livestock and game production in Namibia and Zambia. This paper reports a survey of 43 commercial conservancy members in Namibia and 23 game farmers in Zambia conducted between September 2004 and June 2005. The survey was based on inductive sampling theory and queried farmers on how they have integrated wildlife production into their management practices. Farmers in each country reported considerable integration of wildlife conservation and agricultural production. Namibian farmers reported substantial problems with bush encroachment, whereas none of their Zambian counterparts raised similar complaints. This paper describes the state of rangeland management on commercial farms in Namibia and Zambia and identifies important areas where further research can contribute to the enhancement of this conservation-production system.     

Preparation of validoxylamine A by biotransformation of validamycin A using resting cells of a recombinant <Emphasis Type="Italic">Escherichia coli</Emphasis>

A gene encoding β-glucosidase was cloned and over-expressed in Escherichia coli. Validamycin A was then biotransformed into validoxylamine A by using the resting recombinant cells. The biotransformation yield reached 92% when the reaction was performed at 37°C for 1 h in the presence of 100 ml sodium phosphate buffer (0.1 M, pH 7.0), 32 mM validamycin A and 0.71 mg dry cell w/ml.     

Effect of <Emphasis Type="Italic">poxB</Emphasis> gene knockout on metabolism in <Emphasis Type="Italic">Escherichia coli</Emphasis> based on growth characteristics and enzyme activities

The effect of poxB gene knockout on metabolism in Escherichia coli was investigated in the present paper based on the growth characteristics and the activities of the enzymes involved in the central metabolic pathways. The absence of pyruvate oxidase reduced the glucose uptake rate and cell growth rate, and increased O₂ consumption and CO₂ evolution. The enzyme assay results showed that although glucokinase activity increased, the flux through glycolysis was reduced due to the down-regulation of the other glycolytic enzymes such as 6-phosphofructosekinase and fructose bisphosphate aldolase in the poxB mutant. TCA cycle enzymes such as citrate synthase and malate dehydrogenase were repressed in the poxB mutant when the cells were cultivated in LB medium. The pyruvate oxidase mutation also resulted in the activation of glucose-6-phosphate dehydrogenase and acetyl-CoA synthetase. All these results suggest that pyruvate oxidase is not only a stationary-phase enzyme as previously known, and that the removal of the poxB gene affects the central metabolism at the enzyme level in E. coli.