Albian Palynostratigraphy of ODP Leg 207 (Holes 1257A, 1258C and 1260B), Demerara Rise,Equatorial Atlantic

Palynological analyses were carried out in 96 core samples with the objective of determining the relative age of calcareous clays, in holes 1257A, 1258C and 1260B of ODP Leg 207, drilled on the Demerara Rise, northern coast of Suriname, Equatorial Atlantic. The palynological assemblages recovered consisted of spores, pollen grains, dinoflagellate cysts, palynoforaminifers and prasinophytes and appeared reasonably well preserved. The miospores showed little diversification, where the most significant genera were Crybelosporites and Elaterosporites. The dinocysts showed greater diversity and abundance, predominating over the miospores in the three holes. In the three holes analyzed, eight genera and three species of spores, eight genera and eleven species of pollen grains, and 24 genera and 44 species of dinoflagellates were identified. The middle to late Albian age was determined on the basis of bioevents of recognized species with chronostratigraphic value. The species diagnosed mostly included the miospores Elaterosporites protensus, Elaterosporites verrucatus, Inaperturopollenites simplex and the dinocysts Cribroperidinium muderongense, Dinopterygium cladoides, Litosphaeridium arundum, Litosphaeridium conispinum, Oligosphaeridium complex and Stiphrosphaeridium anthophorum.     

Re-examination of global emerging patterns of ocean DMS concentration

During the last decade the number of seawater dimethylsulfide (DMS) concentration measurements has increased substantially. The importance this gas, emitted from the ocean to the atmosphere, may have in the cloud microphysics and hence in the Earth albedo and radiation budget, makes it necessary to accurately reproduce the global distribution. Recently, the monthly global DMS climatology has been updated taking advantage of the threefold increased size and better resolved distribution of the observations available in the DMS database. Here, the emerging patterns found with the previous versions of the database and climatology are explored with the updated versions. The statistical relationships between the seasonalities of DMS concentrations and other variables are re-examined. The positive correlation previously found between surface seawater DMS and the daily-averaged climatological solar radiation dose in the upper mixed layer of the open ocean is confirmed with both the updated DMS database and climatology. Re-examination of the latitudinal match-mismatch between the seasonalities of DMS and phytoplankton, represented by the chlorophyll a concentration, reveals that they are highly positively correlated in latitudes higher than 40°, but anti-correlated in the 20°–40° latitudinal bands of both hemispheres. Overall, these global emerging patterns provide key information to further understanding the factors that control the emission of volatile sulfur from the ocean. The large uncertainties associated with the methodologies used in global computations, however, call for caution in using these emerging patterns as predictive tools, and prompt to the design of time series and process-oriented studies aimed at testing the validity of the observed relationships.     

Is sexual selection operating in the androdioecious clam shrimp,Eulimnadia texana (Crustacea: Conchostraca)?

Experiments were performed to document the existence of intersexual or intrasexual selection in the clam shrimp,Eulimnadia texana. Individuals within this species are either males or hermaphrodites. Hermaphrodites can self their own eggs or outcross with a male, but they cannot outcross with other hermaphrodites. Theoretical considerations suggest that both intrasexual and intersexual selection could be occurring on the part of the hermaphrodites and the males. When males were given a choice between two non-gravid hermaphrodites of different sizes, they did not exhibit a mating preference based upon size. When two males of different sizes were isolated with a single nongravid receptive hermaphrodite, the hermaphrodite showed no preference between the two males. There was evidence, however, of male-male competition for receptive hermaphrodites and of mate guarding on the part of the males. During aggressive encounters between twp males, the larger of the two had a significant advantage over the smaller, and larger males were always the victors hermaphrodite takeovers occurred as a result of male-male conflict. Hermaphrodites appear to control the mating process both by struglling with males when they are not receptive to them and by selfing in the presence of males. This suggests that hermaphrodites withhold receptivity cues from males, or produce non-receptivity cues, when they are going to self. Though hermaphrodites do not appear to select males based upon size, they make a selection between selfing and outcrossing by controlling the use of receptivity signals.     

Rad3ATR Decorates Critical Chromosomal Domains with γH2A to Protect Genome Integrity during S-Phase in Fission Yeast

Schizosaccharomyces pombe Rad3 checkpoint kinase and its human ortholog ATR are essential for maintaining genome integrity in cells treated with genotoxins that damage DNA or arrest replication forks. Rad3 and ATR also function during unperturbed growth, although the events triggering their activation and their critical functions are largely unknown. Here, we use ChIP-on-chip analysis to map genomic loci decorated by phosphorylated histone H2A (γH2A), a Rad3 substrate that establishes a chromatin-based recruitment platform for Crb2 and Brc1 DNA repair/checkpoint proteins. Unexpectedly, γH2A marks a diverse array of genomic features during S-phase, including natural replication fork barriers and a fork breakage site, retrotransposons, heterochromatin in the centromeres and telomeres, and ribosomal RNA (rDNA) repeats. γH2A formation at the centromeres and telomeres is associated with heterochromatin establishment by Clr4 histone methyltransferase. We show that γH2A domains recruit Brc1, a factor involved in repair of damaged replication forks. Brc1 C-terminal BRCT domain binding to γH2A is crucial in the absence of Rqh1^Sgs1, a RecQ DNA helicase required for rDNA maintenance whose human homologs are mutated in patients with Werner, Bloom, and Rothmund–Thomson syndromes that are characterized by cancer-predisposition or accelerated aging. We conclude that Rad3 phosphorylates histone H2A to mobilize Brc1 to critical genomic domains during S-phase, and this pathway functions in parallel with Rqh1 DNA helicase in maintaining genome integrity.     

A method for concurrent diazomethane synthesis and substrate methylation in a 96-sample format

In the emerging field of metabolomics, there is an increasing need for improving sample derivatization reactions for gas chromatographic-mass spectral analysis of metabolites with large numbers of samples. This protocol details the safe direct derivatization of organic acids using diazomethane in a 96-sample format. Diazomethane is a highly reactive gas that readily forms methyl esters with carboxylic functionalities, with minimal side products or nonvolatile reaction residues. However, diazomethane's reactivity and explosive potential make it hazardous to store and work with. In this procedure, diazomethane is generated in situ and used concurrently to methylate up to 96 samples simultaneously, thus reducing concerns about reagent stability and obviating the need for storage of solutions of the highly reactive gas. Once the diazomethane generator has been assembled, processing 96 samples takes 2-3 h using this procedure.     

Osmotic adjustment and requirement for sodium in marine protist thraustochytrid

A non-invasive ion-selective microelectrode technique was used to elucidate the ionic mechanisms of osmotic adjustment in a marine protist thraustochytrid. Hypoosmotic stress caused significant efflux of Na⁺, Cl^– and K⁺ from thraustochytrid cells. Model calculations showed that almost complete osmotic adjustment was achieved within the first 30 min after stress onset. Of these, sodium was the major contributor (more than half of the total osmotic adjustment), with chloride being the second major contributor. The role of K⁺ in the process of osmotic adjustment was relatively small. Changes in Ca²⁺ and H⁺ flux were attributed to intracellular signalling. Ion flux data were confirmed by growth experiments. Thraustochytrium cells showed normal growth patterns even when grown in a sodium-free solution provided the medium osmolality was adjusted by mannitol to one of the seawater. That suggests that the requirement of sodium for thraustochytrid growth cycle is due to its role in cell osmotic adjustment rather than because of the direct Na⁺ involvement in cell metabolism. Altogether, these data demonstrate the evidence for turgor regulation in thraustochytrids and suggest that these cells may be grown in the absence of sodium providing that cell turgor is adjusted by some other means.     

Collectin 11 (CL-11, CL-K1) is a MASP-1/3-associated plasma collectin with microbial-binding activity

Collectins play important roles in the innate immune defense against microorganisms. Recently, a new collectin, collectin 11 (CL-11 or CL-K1), was identified via database searches. In present work, we characterize the structural and functional properties of CL-11. Under nonreducing conditions, in gel permeation chromatography recombinant CL-11 forms disulfide-linked oligomers of 100 and 200 kDa. A mAb-based ELISA estimates the concentration of CL-11 in plasma to be 2.1 μg/ml, and the presence of CL-11 in plasma was further verified by Western blotting and mass spectrometry. Mannan-binding lectin-associated serine protease 1 (MASP-1) copurified with CL-11 and the interaction in plasma with MASP-1 and/or MASP-3 was further demonstrated using ELISA. We identified the adrenal glands, the kidneys, and the liver as primary sites of expression. CL-11 lectin activity was demonstrated by ELISA and showed that CL-11 has preference for l-fucose and d-mannose. We finally show that CL-11 binds to intact bacteria, fungi, and viruses and that CL-11 decreases influenza A virus infectivity and forms complexes with DNA. On the basis of the significant concentration of CL-11 in circulation and CL-11's interaction with various microorganisms and MASP-1 and/or MASP-3, it is conceivable that CL-11 plays a role in activation of the complement system and in the defense against invading microorganisms.     

A critical review of ontogenetic development in Terebellidae (Polychaeta)

Garraffoni, A.R.S. and Lana, P.C. 2009. A critical review of ontogenetic development in Terebellidae (Polychaeta). —Acta Zoologica (Stockholm) 91 : 390–401. This study reviews the ontogenetic variability of the head, the first segments and the uncini in Terebellidae, based on primary literature and development series of four terebellid species. We test hypotheses on character homologies and indicate informative characters for future phylogenetic analyses. The prostomium, identified as the region above the prototroch band of the larva, in addition to being the region of origin of the buccal tentacles, contains a series of nerves originating from the cerebrum. The peristomium, which contains the mouth, is innervated by the stomogastric nerve and consists of upper and lower lips and an internal pharynx. The loss of the first notochaetae and neurochaetae in the course of development is a recurrent pattern in terebellids. The claviform chaetae disappear with age and growth, and can be used to define the larval stage. Chaetogenesis shows that the long shaft‐shaped manubrium and posterior process develop from different regions. The uncini terminology ‘double rows’ was reinterpreted and renamed ‘inverted rows’, which better reflects the inversion of chaetal positions during ontogenetic development.     

Oscillations in plant membrane transport: model predictions, experimental validation, and physiological implications

Although oscillations in membrane-transport activity are ubiquitous in plants, the ionic mechanisms of ultradian oscillations in plant cells remain largely unknown, despite much phenomenological data. The physiological role of such oscillations is also the subject of much speculation. Over the last decade, much experimental evidence showing oscillations in net ion fluxes across the plasma membrane of plant cells has been accumulated using the non-invasive MIFE technique. In this study, a recently proposed feedback-controlled oscillatory model was used. The model adequately describes the observed ion flux oscillations within the minute range of periods and predicts: (i) strong dependence of the period of oscillations on the rate constants for the H+ pump; (ii) a substantial phase shift between oscillations in net H+ and K+ fluxes; (iii) cessation of oscillations when H+ pump activity is suppressed; (iv) the existence of some 'window' of external temperatures and ionic concentrations, where non-damped oscillations are observed: outside this range, even small changes in external parameters lead to progressive damping and aperiodic behaviour; (v) frequency encoding of environmental information by oscillatory patterns; and (vi) strong dependence of oscillatory characteristics on cell size. All these predictions were successfully confirmed by direct experimental observations, when net ion fluxes were measured from root and leaf tissues of various plant species, or from single cells. Because oscillatory behaviour is inherent in feedback control systems having phase shifts, it is argued from this model that suitable conditions will allow oscillations in any cell or tissue. The possible physiological role of such oscillations is discussed in the context of plant adaptive responses to salinity, temperature, osmotic, hypoxia, and pH stresses.     

In vivo insertional mutagenesis in Corynebacterium pseudotuberculosis: an efficient means to identify DNA sequences encoding exported proteins

The reporter transposon-based system TnFuZ was used to identify exported proteins of the animal pathogen Corynebacterium pseudotuberculosis. Thirty-four out of 1,500 mutants had detectable alkaline phosphatase (PhoZ) activity. This activity was from 21 C. pseudotuberculosis loci that code for fimbrial and transport subunits and for hypothetical and unknown-function proteins.