PCR-Based Screening for the Most Prevalent Alpha 1 Antitrypsin Deficiency Mutations (PI S, Z, and Mmalton) in COPD Patients from Eastern Tunisia

It is generally agreed that the protease inhibitor (PI) alleles PI*S (Val264Glu) and PI*Z (Lys342Glu) are the most common alpha 1 antitrypsin deficiency variants worldwide, but the PI*Mmalton allele (ΔPhe52) prevails over these variants in some Mediterranean regions. In eastern Tunisia (Mahdia), we screened 100 subjects with chronic obstructive pulmonary disease for these variants. The PI*S and PI*Z alleles were genotyped by the previously described SexAI/Hpγ99I RFLP–PCR. We provide here a new method for PI*Mmalton genotyping using mismatched RFLP–PCR. These methods are suitable for routine clinical application and can easily be reproduced by several laboratories, since they do not require extensive optimization, unlike the previously described bidirectional allele-specific amplification PCR for PI*Mmalton genotyping. Our results were in agreement with previous reports from central Tunisia (Kairouan), suggesting that the PI*Mmalton mutation is the most frequent alpha 1 antitrypsin deficiency-related mutation in Tunisia.     

Risk of municipal solid waste compost and sewage sludge use on photosynthetic performance in common crop (<Emphasis Type="Italic">Triticum durum</Emphasis>)

The effect of composted municipal solid waste (MSW) and sewage sludge (SS) on photosynthetic activity of wheat (Triticum durum L.) was investigated. Chlorophyll fluorescence and gas exchange parameters were assessed following application of up to 300 t ha^?1 of MSW compost or SS. 100 t ha^?1 MSW compost was optimal for the plant growth, which showed 78% stimulation as compared to the control. This was associated with higher maximum quantum efficiency (F _v /F _m) of photosystem II (PSII) and the actual quantum efficiency of PSII open centers at light adapted state (ΔF/\(F_{\rm m}^{\prime}\)). Maximal values of net photosynthetic rate and stomatal conductance were recorded at 100 t ha^?1 MSW compost (+40 and +116%, respectively). Ribulose bisphosphate carboxylase/oxygenase (RubisCO) activity was also significantly stimulated at 100 t ha^?1, while less significant impact was found in SS treatment. A marked accumulation of Ni, Pb, Cu, and Zn in concomitance with membrane lipid peroxidation were observed at 200–300 t ha^?1 MSW compost and SS, resulting in lower photosynthetic activity and altered PSII functional integrity. Altogether, these results suggest that the MSW compost at 100 t ha^?1 would be suitable for wheat cultivation, within the critical limits of heavy metal accumulation. However, long-term field experiments seem necessary to more accurately evaluate the safety of MSW application.     

Optical and structural properties of composites films based on Ce3+-doped yttrium aluminium garnet nanoparticles embedded in polystyrene

In the present work, attempts have been made to prepare scintillating nanoparticle composite films of Ce³⁺-doped Y₃Al₅O₁₂ (YAG:Ce) embedded in a polystyrene (PS) polymer. A YAG:Ce phosphor has been previously synthesized using the sol–gel method. YAG:Ce-PS composite films of 250 ± 30 μm thickness were prepared using a solvent casting procedure with different PS/solvent concentration and a different mass ratio between nanoparticles of YAG:Ce and PS. X-ray diffraction analysis confirmed that the YAG:Ce powders were successfully prepared. Using thermogravimetric analyses and differential scanning calorimetry, we found that the glass transition temperature (Tg) and thermal degradation were shifted to higher temperatures for composite films relative to pure PS. Photoluminescence showed the yellow emission of the Ce³⁺-doped YAG phosphors, which was attributed to the 5d→4f transition of Ce³⁺ ion and the intensity of the emissions changed with the mass ratio of the YAG:Ce nanoparticles incorporated in the polymer and with the concentration of the polymer solution.     

Evaluation of the capacity of three halophytes to desalinize their rhizosphere as grown on saline soils under nonleaching conditions

In the sabkha of Soliman (N‐E Tunisia), soil samples of the upper 20 cm were taken during the driest period of the year (July–August) from inside and outside tufts of two perennial halophytes: Arthrocnemum indicum (Willd.) Moq. and Suaeda fruticosa Forssk., both from family Chenopodiaceae. Samples were analysed for electrical conductivity of the saturation paste extract (ECe) and soluble sodium (Na⁺) content. Then, tufts were divided into three size categories and their shoot biomass production and Na⁺ content were determined. Our results showed a considerable contribution of shoot Na⁺ accumulation to rhizosphere desalination. The capacity of the two native halophytes A. indicum. and S. fruticosa to desalinize saline soils was compared with that of an introduced halophyte, Sesuvium portulacastrum L. (Aizoaceae). Seedlings were grown under greenhouse conditions in pots containing 8 kg of saline soil each. Pots were irrigated with tap water during 170 days without leaching. Our results confirmed the contribution of shoot Na⁺ accumulation to soil desalination. They showed also that among the three studied species, Sesuvium portulacastrum L. seems to be the most convenient to be used for this purpose in arid and semi‐arid regions where precipitation is too low to leach salts from rhizosphere.     

Efficacy of Bacillus subtilis and Trichoderma harzianum combination on chickpea Fusarium wilt caused by F. oxysporum f. sp. ciceris

Fusarium wilt is caused by F. oxysporum Schlecht end. Fr. f. sp. ciceris (FOC) is a devastating disease of chickpea in Algeria. In this study, antagonistic effects of B. subtilis MF352017 (Bs1) and Trichoderma harzianum KX523899 (T5) isolated from the rhizosphere of chickpea were investigated separately and in combination for their efficacy in controlling the disease in vivo. The efficacy of the antagonistic biocontrol agents on Fusarium wilt was evaluated based on vegetative and root growth parameters of chickpea. Seed bacterisation with B. subtilis MF352017 (Bs1) and seed treatment with T. harzianum (T5) significantly protected chickpea seedlings from FOC as compared to untreated plants. Plant protection was more pronounced in T. harzianum-treated plants than in bacterised plants. The application of both antagonists effectively suppressed 93.67% of the disease and also enhanced plant growth leading to increased plant height, root length, fresh and dry weights of shoot and root. The mixture of antagonists increased the effectiveness of B. subtilis MF352017 (Bs1) isolate on Fusarium wilt and improved chickpea growth.     

Multiobjective long-term planning of biopharmaceutical manufacturing facilities

Biopharmaceutical companies with large portfolios of clinical and commercial products typically need to allocate production across several multiproduct facilities, including third party contract manufacturers. This poses several capacity planning challenges which are further complicated by the need to satisfy different stakeholders often with conflicting objectives. This work addresses the question of how a biopharmaceutical manufacturer can make better long-term capacity planning decisions given multiple strategic criteria such as cost, risk, customer service level, and capacity utilization targets. A long-term planning model that allows for multiple facilities and accounts for multiple objectives via goal programming is developed. An industrial case study based on a large scale biopharmaceutical manufacturer is used to illustrate the functionality of the model. A single objective model is used to identify how best to use existing capacity so as to maximize profits for different demand scenarios. Mitigating risk due to unforeseen circumstances by including a dual facility constraint is shown to be a reasonable strategy at base case demand levels but unacceptable if demands are 150% higher than expected. The capacity analysis identifies where existing capacity fails to meet demands given the constraints. A multiobjective model is used to demonstrate how key performance measures change given different decision making policies where different weights are assigned to cost, customer service level, and utilization targets. The analysis demonstrates that a high profit can still be achieved while meeting key targets more closely. The sensitivity of the optimal solution to different limits on the targets is illustrated.     

Anaerobic oxidation of long-chain n-alkanes by the hyperthermophilic sulfate-reducing archaeon,Archaeoglobus fulgidus

The thermophilic sulfate-reducing archaeon Archaeoglobus fulgidus strain VC-16 (DSM 4304), which is known to oxidize fatty acids and n-alkenes, was shown to oxidize saturated hydrocarbons (n-alkanes in the range C₁₀–C₂₁) with thiosulfate or sulfate as a terminal electron acceptor. The amount of n-hexadecane degradation observed was in stoichiometric agreement with the theoretically expected amount of thiosulfate reduction. One of the pathways used by anaerobic microorganisms to activate alkanes is addition to fumarate that involves alkylsuccinate synthase as a key enzyme. A search for genes encoding homologous enzymes in A. fulgidus identified the pflD gene (locus-tag AF1449) that was previously annotated as a pyruvate formate lyase. A phylogenetic analysis revealed that this gene is of bacterial origin and was likely acquired by A. fulgidus from a bacterial donor through a horizontal gene transfer. Based on three-dimensional modeling of the corresponding protein and molecular dynamic simulations, we hypothesize an alkylsuccinate synthase activity for this gene product. The pflD gene expression was upregulated during the growth of A. fulgidus on an n-alkane (C₁₆) compared with growth on a fatty acid. Our results suggest that anaerobic alkane degradation in A. fulgidus may involve the gene pflD in alkane activation through addition to fumarate. These findings highlight the possible importance of hydrocarbon oxidation at high temperatures by A. fulgidus in hydrothermal vents and the deep biosphere.     

Relationship between GSTM1 and GSTT1 polymorphisms and schizophrenia: A case–control study in a Tunisian population

There is substantial evidence found in the literature that supports the fact that the presence of oxidative stress may play an important role in the pathophysiology of schizophrenia. The glutathione S-transferases (GSTs) forms one of the major detoxifying groups of enzymes responsible for eliminating products of oxidative stress. Interindividual differences observed in the metabolism of xenobiotics have been attributed to the genetic polymorphism of genes coding for enzymes involved in detoxification. Thus, in this study we investigated the association of glutathione S-transferase Mu-1 (GSTM1) and glutathione S-transferase theta-1 (GSTT1) gene deletion polymorphisms and schizophrenia in a Tunisian population. A case–control study including 138 schizophrenic patients and 123 healthy controls was enrolled. The GSTM1 and GSTT1 polymorphisms were analyzed by multiplex polymerase chain reaction (PCR). No association was found between the GSTM1 genotype and schizophrenia, whereas the prevalence of the GSTT1 active genotype was significantly higher in the schizophrenic patients (57.2%) than in the controls (45.5%) with (OR = 0.6, IC 0.37–0.99, p = 0.039). Thus, we noted a significant association between schizophrenia and GSTT1 active genotype. Furthermore, the combination of the GSTM1 and GSTT1 null genotypes showed a non-significant trend to an increased risk of schizophrenia. The present finding indicated that GSTT1 seems to be a candidate gene for susceptibility to schizophrenia in at least Tunisian population.