Sensitive fluorescence in situ hybridization signal detection in maize using directly labeled probes produced by high concentration DNA polymerase nick translation

The signal produced by fluorescence in situ hybridization (FISH) often is inconsistent among cells and sensitivity is low. Small DNA targets on the chromatin are difficult to detect. We report here an improved nick translation procedure for Texas red and Alexa Fluor 488 direct labeling of FISH probes. Brighter probes can be obtained by adding excess DNA polymerase I. Using such probes, a 30?kb yeast transgene, and the rp1, rp3 and zein multigene clusters were clearly detected.     

Effect of temperature on seed production in the invasive grass Glyceria maxima (Hartm.) Holmb. (Poaceae) in South Africa

Temperature is one of the main factors that determine sexual reproduction in terrestrial and emergent aquatic plant species. The effect of temperature on sexual reproduction and seed production of Glyceria maxima (Hartm.) Holmb. in the southern hemisphere is unknown. Glyceria maxima collections in February 2010 at three isolated infestations in KwaZulu-Natal failed to yield a single seed, only empty panicles. Laboratory experiments showed that vernalisation had no consistent effect on seed production. Field- and laboratory-grown plants produced seeds in the 2010/2011 season, because of having sufficient time at optimum temperatures required for seed production (1 491 and 1 585 hours, respectively), compared to a shorter period (1 352 hours) of suitable temperatures during the 2009/2010 growing season. An inadequate period of optimum temperatures (15–25°C) during seed production resulted in the lack of seeds in the field in the 2009/2010 growing season. This study showed that temperature and duration of exposure thereto during the seed-production period play vital roles in G. maxima sexual reproduction.     

An improved technique for obtaining well-spread metaphases from plants with numerous large chromosomes

Preparations that contain well-spread metaphase chromosomes are critical for plant cytogenetic analyses including chromosome counts, banding procedures, in situ hybridization, karyotyping and construction of ideograms. Chromosome spreading is difficult for plants with large and numerous chromosomes. We report here a technique for obtaining cytoplasm-free, well-spread metaphases from two Amaryllidaceae species: Sprekelia formosissima (2n = 120) and Hymenocallis howardii (2n = 96). The technique has three main steps: 1) pretreatment to cause chromosome condensation, 2) dripping onto tilted slides coated with a thin layer of pure acetic acid and 3) application of steam and acetic acid to produce cytoplasmic hydrolysis, which spreads the chromosomes.     

Use of the EM algorithm to detect QTL affecting multiple-traits in an across half-sib family analysis

QTL detection experiments in livestock species commonly use the half-sib design. Each male is mated to a number of females, each female producing a limited number of progeny. Analysis consists of attempting to detect associations between phenotype and genotype measured on the progeny. When family sizes are limiting experimenters may wish to incorporate as much information as possible into a single analysis. However, combining information across sires is problematic because of incomplete linkage disequilibrium between the markers and the QTL in the population. This study describes formulæ for obtaining MLEs via the expectation maximization (EM) algorithm for use in a multiple-trait, multiple-family analysis. A model specifying a QTL with only two alleles, and a common within sire error variance is assumed. Compared to single-family analyses, power can be improved up to fourfold with multi-family analyses. The accuracy and precision of QTL location estimates are also substantially improved. With small family sizes, the multi-family, multi-trait analyses reduce substantially, but not totally remove, biases in QTL effect estimates. In situations where multiple QTL alleles are segregating the multi-family analysis will average out the effects of the different QTL alleles.     

Cytomegalovirus seropositivity is associated with glucose regulation in the oldest old. Results from the Leiden 85-plus Study

ABSTRACT: BACKGROUND: Cytomegalovirus (CMV) infection has been reported to contribute to the pathogenesis of type 1 diabetes and post-transplantation diabetes. However, CMV infection has not been evaluated as a possible risk factor for type 2 diabetes. Our aim was to investigate potential associations between CMV seropositivity, CMV IgG antibody level and glucose regulation in the oldest old. RESULTS: CMV seropositive subjects were more likely to have type 2 diabetes (17.2% vs 7.9%, p = 0.016), had a higher level of HbA1c (p = 0.014) and higher non-fasting glucose (p = 0.024) in the oldest olds. These associations remained significant after adjustment for possible confounders. CMV IgG antibody level was not significantly associated with glucose regulation (all p > 0.05). CONCLUSIONS: In the oldest old, CMV seropositivity is significantly associated with various indicators of glucose regulation. This finding suggests that CMV infection might be a risk factor for the development of type 2 diabetes in the elderly.     

Chemical and physiological changes in fungi during autolysis

A comparative study was done on some of the chemical changes occurring during autolysis of cultures ofAspergillus flavus in both physiologically acid and alkaline media. The mycelium ofA. flavus lost during autolysis 44 % of its maximum dry weight in the physiologically alkaline medium, whereas this loss was apparently nil in the physiologically acid medium. Nitrogen containing compounds seemed not to be affected by autolysis either in the physiologically acid or alkaline media. The disappearance of P-containing compounds in mycelium ofA. flavus autolysed in both conditions (NO ₃ ^– and NH ₄ ⁺ as N source) amounted to 64 % in the alkaline autolysis and to nearly 77 % in the acid autolysis. The results we have obtained for the acid autolysis strongly suggest that very little activity is shown by autolytic enzymes in the interval 10–133 days of incubation, when measuring autolysis by the loss in mycelial dry weight.

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Zusammenfassung Eine vergleichende Untersuchung war unternommen an einigen der chemischen Veränderungen, die während der Autolyse der Kulturen vonAspergillus flavus in physiologischen sauren und alkalischen Medien vorkommen. Die Myzelien vonA. flavus haben während der Autolyse 44 % ihres größten Trockengewichtes in physiologisch alkalischem Medium verloren, während dieser Verlust in physiologisch saurem Medium anscheinend Null gewesen ist. Stickstoff enthaltende Substanzen erschienen während der Autolyse weder in physiologisch saueren noch in alkalischen Medien beeinflußt zu sein. Das Verschwinden von P-enthaltenden Substanzen in Myzelien vonA. flavus in Autolyse unter beiden Bedingungen (NO ₃ ^– und NH ₄ ⁺ als Stickstoffquelle) erreichte 64 % in alkalischer Autolyse und beinahe 77 % in der saueren Autolyse. Die Ergebnisse, die wir in der saueren Autolyse erhalten haben legen es sehr nahe, daß autolytische Enzyme eine sehr geringe Aktivität in der Zeitspanne von 10–133 Tagen der Inkubazion zeigen, wenn die Autolyse an dem Verlust des mycelialen Trockengewichtes gemessen wird.

     

Valid and reliable instruments for arm-hand assessment at ICF activity level in persons with hemiplegia: a systematic review

Background

Loss of arm-hand performance due to a hemiparesis as a result of stroke or cerebral palsy (CP), leads to large problems in daily life of these patients. Assessment of arm-hand performance is important in both clinical practice and research. To gain more insight in e.g. effectiveness of common therapies for different patient populations with similar clinical characteristics, consensus regarding the choice and use of outcome measures is paramount. To guide this choice, an overview of available instruments is necessary. The aim of this systematic review is to identify, evaluate and categorize instruments, reported to be valid and reliable, assessing arm-hand performance at the ICF activity level in patients with stroke or cerebral palsy.

Methods

A systematic literature search was performed to identify articles containing instruments assessing arm-hand skilled performance in patients with stroke or cerebral palsy. Instruments were identified and divided into the categories capacity, perceived performance and actual performance. A second search was performed to obtain information on their content and psychometrics.

Results

Regarding capacity, perceived performance and actual performance, 18, 9 and 3 instruments were included respectively. Only 3 of all included instruments were used and tested in both patient populations. The content of the instruments differed widely regarding the ICF levels measured, assessment of the amount of use versus the quality of use, the inclusion of unimanual and/or bimanual tasks and the inclusion of basic and/or extended tasks.

Conclusions

Although many instruments assess capacity and perceived performance, a dearth exists of instruments assessing actual performance. In addition, instruments appropriate for more than one patient population are sparse. For actual performance, new instruments have to be developed, with specific focus on the usability in different patient populations and the assessment of quality of use as well as amount of use. Also, consensus about the choice and use of instruments within and across populations is needed.     

RETRACTED ARTICLE: Mast cells are the main interleukin 17-positive cells in anticitrullinated protein antibody-positive and -negative rheumatoid arthritis and osteoarthritis synovium

Introduction  

Mast cells have been implicated to play a functional role in arthritis, especially in autoantibody-positive disease. Among the cytokines involved in rheumatoid arthritis (RA), IL-17 is an important inflammatory mediator. Recent data suggest that the synovial mast cell is a main producer of IL-17, although T cells have also been implicated as prominent IL-17 producers as well. We aimed to identify IL-17 expression by mast cells and T cells in synovium of arthritis patients.     

Effect of the level of the carbon source on the activity of some lytic enzymes released during autolysis of Aspergillus niger

Changes in the activity of -N-acetylglucosaminidase, chitinase, invertase, esterases, glucanases and phosphatases liberated into the culture fluid were followed during the autolytic phase of growth of Aspergillus niger on media with various initial levels of the carbon source. The general pattern was of an accumulation of these lytic enzymes in the culture fluid during autolysis, but some enzymes reached maximum activity and then declined. The initial level of the carbon source affected the enzyme pattern during autolysis. Maximum activity for the various enzymes was always observed either for the lowest initial level of carbon or the highest (3.5 mM glucose, 111 mM glucose). The highest specific activities were those for exopolygalacturonidase (500 mU/mg at 3.45 mM glucose), and for -amylase (about 500 mU/mg at 3.45 mM glucose). Cellulase, chitinase and esterase showed the weakest activity. Acid phosphatase was most active (about 200 mU/mg) at 3.45 mM initial glucose, whereas alkaline phosphatase was most active (45 mU/mg) at 111 mM glucose, both during the autolytic phase of growth.