Diet of bluegill Lepomis macrochirus in a South African reservoir during winter and summer

Alien fishes are considered a major threat to aquatic biodiversity in South Africa, yet relatively little regional information on their biology and ecology is available for many of these species. Seasonal changes in the diet of the bluegill Lepomis macrochirus in Howieson’s Poort Dam, Grahamstown, were assessed during summer and winter in 2014–2015, using stomach content analysis. In winter, juvenile and adult fish diets were dominated by crustacean zooplankton and insects, respectively. In summer, juvenile fish fed on crustaceans and insects, whereas adults consumed mostly fish eggs, indicating a potential impact by these invasive fish on native fish through oophagy.     

A novel Atg5-shRNA mouse model enables temporal control of Autophagy in vivo

Macroautophagy/autophagy is an evolutionarily conserved catabolic pathway whose modulation has been linked to diverse disease states, including age-associated disorders. Conventional and conditional whole-body knockout mouse models of key autophagy genes display perinatal death and lethal neurotoxicity, respectively, limiting their applications for in vivo studies. Here, we have developed an inducible shRNA mouse model targeting Atg5, allowing us to dynamically inhibit autophagy in vivo, termed ATG5i mice. The lack of brain-associated shRNA expression in this model circumvents the lethal phenotypes associated with complete autophagy knockouts. We show that ATG5i mice recapitulate many of the previously described phenotypes of tissue-specific knockouts. While restoration of autophagy in the liver rescues hepatomegaly and other pathologies associated with autophagy deficiency, this coincides with the development of hepatic fibrosis. These results highlight the need to consider the potential side effects of systemic anti-autophagy therapies.     

The self-incompatibility phenotype in brassica is altered by the transformation of a mutant S locus receptor kinase

The self-incompatible (SI) Brassica napus line W1, which carries the 910 S allele, was transformed with an inactive copy of the 910 S locus receptor kinase (SRK) gene. Two transformed lines were analyzed based on their heritable ability to set self-seed. The first line was virtually completely self-compatible (SC), and reciprocal pollinations with the original W1 line demonstrated that only the stigma side of the SI phenotype was altered. An analysis of the expression of endogenous SRK-910 demonstrated that the mechanism of transgene action is via gene suppression. Furthermore, the expression of the S locus glycoprotein gene present in the 910 allele (SLG-910), SLG-A10, which is derived from a nonfunctional S allele, and an S locus-related gene were also suppressed. When the transgene was crossed into another SI line carrying the A14 S allele, it was also capable of suppressing the expression of the endogenous genes and of making this line SC. The second transgenic line studied was only partly SC. In this case as well, only the stigma phenotype was affected, although no gene suppression was detected for endogenous SRK-910 or SLG-910. In this line, the expression of the transgene most likely was causing the change in phenotype, and no effect was observed when this transgene was crossed into the other SI line. Therefore, this work reinforces the hypothesis that the SRK gene is required, but only for the stigma side of the SI phenotype, and that a single transgene can alter the SI phenotype of more than one S allele.     

The ghosts of forests past and future: deforestation and botanical sampling in the Brazilian Amazon

The remarkable biodiversity of the Brazilian Amazon is poorly documented and threatened by deforestation. When undocumented areas become deforested, in addition to losing the fauna and flora, we lose the opportunity to know which unique species had occupied a habitat. Here we quantify such knowledge loss by calculating how much of the Brazilian Amazon has been deforested and will likely be deforested until 2050 without having its tree flora sufficiently documented. To this end, we analysed 399 147 digital specimens of nearly 6000 tree species in relation to official deforestation statistics and future deforestation scenarios. We find that by 2017, 30% of all the localities where tree specimens had been collected were mostly deforested. Some 300 000 km² (12%; 485 25 × 25 km grid cells) of the Brazilian Amazon had been deforested by 2017, without having a single tree specimen recorded. An additional 250 000–900 000 km² of severely under-collected rainforest will likely become deforested by 2050. If future tree sampling is to cover this area, sampling effort has to increase two- to six-fold. Nearly 255 000 km² or 7% of rainforest in the Brazilian Amazon is easily accessible but does yet but remain under-collected. Our study highlights how progressing deforestation increases the risk of losing undocumented species of a hyper-diverse tree flora.     

A study on the faeces of some chalk stream invertebrates

An account is given of the size, form, texture, colour, cohesion and composition of the faeces of 41 species of invertebrates found in chalk streams. The relationships between the character of the faeces and the taxonomic positions and habits of the producers are considered.The importance of faeces production relative to the bulk of stream bed sediments is discussed. Faeces of different origins accumulate in different areas of the stream bed and these differences may be associated in part with their form and structure and in part with the distribution of the species from which they originate. In the summer months tubificid worms alone may be responsible for reworking between 0.3% and 0.5% of the fine particulate material in sediments every day.     

Invertebrate colonisation of the gravel substratum of an experimental recirculating channel

The development of an invertebrate community in a large scale, experimental stream system is described. Colonisation was chiefly by means of ovipositing adult insects with lesser components introduced with water and stones. A succession of taxa was recorded with large peaks of numbers in the spring and the autumn, comparable to those observed in studies on natural streams. Diversity of the fauna increased quickly at first and then more slowly, possibly because of the reduced availability of ovipositing adults later in the year. Even in the absence of drift and migration, recruitment of insect larvae, which naturally favour gravel substrata in running water, can be rapid and will produce a varied community in which Chironomidae and Ephemeroptera play an important role.     

The evolutionary ecology of detritus feeding in the larvae of freshwater Diptera

Detritus (dead organic matter), largely of terrestrial origin, is superabundant in inland waters but because of its indigestible nature, would appear to be a poor food source for animals. Yet this unpromising material is widely used as food and indeed can be viewed as a defining characteristic of the freshwater environment. We here explore the relationships among animals, detritus and its associated micro-organism decomposers, taking a functional approach. We pose questions about interrelationships and attempt to arrive at new insights by disentangling them from an adaptive point of view. To do this we have been careful in selecting the habitats for detailed consideration. Rain pools on rock surfaces in tropical Africa and pools on peat moorland in the UK were chosen. Both examples have a relatively simple community structure and hence offer the prospect of achieving our aim. As model organisms for study we focus principally on the aquatic stages of selected holometabolous insects; that is, selected genera of the universally common midges, Ceratopogonidae and Chironomidae. We approach these case studies from an evolutionary ecology perspective and see detritus as a simple template upon which a beautiful complex of adaptations can evolve.     

Diel migration and site fidelity in a stream-dwelling cyprinid, Leuciscus leuciscus

During May and June 1995, radio-telemetry was used to record diel movements between different, clearly defined daytime and night-time habitats in dace Leuciscus leuciscus . The frequent and often rapid return of individuals to previously occupied locations at dawn and dusk suggests differential habitat suitability according to light intensity, and appears similar in some respects to roosting behaviour in birds.     

Catching fairies and the public representation of biogeography

Biogeography is a vibrant academic discipline that plays an important role in framing and directing debates on some of the most important environmental issues of our time, such as the impacts of climate change on biodiversity, biotic homogenization and the effectiveness of global conservation policy. Despite this, biogeography suffers from a low public profile and may consequently be poorly understood by the public. Here I review the representation of the term biogeography, and a selection of biogeographers in the public sphere (newspapers, websites, blogs) and the academic sphere (journals and reports) to understand more fully the public perception of the discipline. As anticipated, the survey suggests that the term 'biogeography' has little public currency, and that the public still largely associate the subject area with either eminent Victorians such as A.R. Wallace or modern greats such as E.O. Wilson. I conclude by discussing the potential consequences of the virtual absence of biogeography from public discourse for education and professional biogeographers.