Principal components analysis and trend surface analysis of a small-scale pattern in a transition mire

Principal components analysis and trend surface analysis have been applied to a transition mire with the aim to characterize the vegetation pattern and reveal the major trends of variation. The first three PCA axes were ecologically interpretable, viz. the 1 st and 2nd as a complex soil moisture gradient and the 3rd axis as a gradient in the amount of peat in the soil. The ecological interpretability of the 1st axis of PCA after VARIMAX rotation, is unclear because some outlier samples caused a reorientation of the axis. TSA appeared to be useful for the clarification of joint patterns of species groups, which were major contributors to ordination axes in terms of component loadings. The smooth effect of TSA was briefly discussed in connection with the influence of extremes upon the outcoming trend structure. The use of four-variable TSA including a time series is emphasized for the study of spatial-temporal relations and ecological succession.     

Structural studies of FIV and HIV-1 proteases complexed with an efficient inhibitor of FIV protease

Three forms of feline immunodeficiency virus protease (FIV PR), the wild type (wt) and two single point mutants, V59I and Q99V, as well as human immunodeficiency virus type 1 protease (HIV-1 PR), were cocrystallized with the C2-symmetric inhibitor, TL-3. The mutants of FIV PR were designed to replace residues involved in enzyme-ligand interactions by the corresponding HIV-1 PR residues at the structurally equivalent position. TL-3 shows decreased (improved) inhibition constants with these FIV PR mutants relative to wt FIV PR. Despite similar modes of binding of the inhibitor to all PRs (from P3 to P3'), small differences are evident in the conformation of the Phe side chains of TL-3 at the P1 and P1' positions in the complexes with the mutated FIV PRs. The differences mimick the observed binding of TL-3 in HIV-1 PR and correlate with a significant improvement in the inhibition constants of TL-3 with the two mutant FIV PRs. Large differences between the HIV-1 and FIV PR complexes are evident in the binding modes of the carboxybenzyl groups of TL-3 at P4 and P4'. In HIV-1 PR:TL-3, these groups bind over the flap region, whereas in the FIV PR complexes, the rings are located along the major axis of the active site. A significant difference in the location of the flaps in this region of the HIV-1 and FIV PRs correlates with the observed conformational changes in the binding mode of the peptidomimetic inhibitor at the P4 and P4' positions. These findings provide a structural explanation of the observed Ki values for TL-3 with the different PRs and will further assist in the development of improved inhibitors.     

Different effects on human topoisomerase I by minor groove and intercalated deoxyguanosine adducts derived from two polycyclic aromatic hydrocarbon diol epoxides at or near a normal cleavage site

Topoisomerase I (top1) relieves supercoiling in DNA by forming transient covalent cleavage complexes. These cleavage complexes can accumulate in the presence of damaged DNA or anticancer drugs that either intercalate or lie in the minor groove. Recently we reported that covalent diol epoxide (DE) adducts of benzo[a]pyrene (BaP) at the exocyclic amino group of G(+1) block cleavage at a preferred cleavage site ( approximately CTT-G(+1)G(+2)A approximately ) and cause accumulation of cleavage products at remote sites. In the present study, we have found that the 10S G(+2) adduct of BaP DE, which lies toward the scissile bond in the minor groove, blocks normal cleavage, whereas the 10R isomer, which orients away from this bond, allows normal cleavage but blocks religation. In contrast to BaP, the pair of benzo[c] phenanthrene (BcPh) DE adducts at G(+2), which intercalate from the minor groove either between G(+1)/G(+2) or between G(+2)/A, allow normal cleavage but block religation. Both intercalated BcPh DE adducts at G(+1) suppress normal cleavage, as do both groove bound BaP DE adducts at this position. These studies demonstrate that these DE adducts provide a novel set of tools to study DNA topoisomerases and emphasize the importance of contacts between the minor groove and top1's catalytic site.     

The Roggeveldberge — Notes on a botanically hot area on a cold corner of the southern Great Escarpment, South Africa

Despite the Roggeveldberge comprising the montane heart of the celebrated Hantam-Roggeveld Centre of Plant Endemism (HRC), this section of the southern Great Escarpment in South Africa is botanically poorly known. A detailed physical, historical and phytogeographical overview of the Roggeveldberge is thus presented, and a checklist of 513 plant taxa is provided as a contribution towards a more complete flora for the Roggeveld-Komsberg Escarpment. The HRC is considered in detail, including various delimitations, and all species purported to be endemic to the HRC are reviewed and separated into actual endemics, near-endemics and species incorrectly considered as endemic.     

A phytogeographic assessment of the Nuweveldberge, South Africa

The Nuweveldberge forms the central and most arid component to the southern Great Escarpment in South Africa. Situated between the Sneeuberg in the east and the Hantam-Roggeveld in the west, the Nuweveldberge has elements of both the Succulent Karoo and Grassland Biomes. The Nuweveldberge has low endemism (0.5%) compared to the adjacent Sneeuberg (2.3%) and Roggeveldberge (ca. 8%). Following an extensive floristic survey of the Nuweveldberge, a contribution of 473 taxa is provided. Together with the flora by Rubin et al., 2001 for the Karoo National Park this provides a total flora of 1139 taxa for the Nuweveldberge. Numerous range extensions of (previous) Sneeuberg endemics and Drakensberg near-endemics onto the Nuweveldberge are recorded. Although the Nuweveldberge may have been a corridor facilitating the movement of species from the Cape Floristic Region via the Komsberg through the Nuweveldberge onto the Sneeuberg (and of Drakensberg elements westwards from the Sneeuberg) there is currently little evidence of such connectivity. This is postulated to be due to aridification of the Nuweveldberge since the Last Glacial Maximum, and also likely explains the low endemism on the Nuweveldberge.     

Conspectus of classes of European vegetation

This is a first approximation to a Conspectus of classes of European vegetation. European vegetation consists, according to the present scheme, of 73 classes. An attempt was made to compile all available names of classes which have ever appeared in European phytosociological literature. The names were checked for nomenclatural accuracy. Lists of synonyms and related names are given. The classes, are characterised by a brief diagnosis, a comprehensive list of diagnostic species, and a list of basic references. Several syntaxonomic problems are discussed in the form of short notes.     

European Vegetation Survey: Current state of some national programmes

Abstract. Vegetation survey programmes in Austria, Great Britain, the Netherlands and Germany are described. The aims of these programmes are discussed and their origin and motivation elucidated against the historical background of the development of phytosociology (as part of vegetation science) in particular countries. The Austrian, British and Dutch national vegetation surveys have been logistically supported by either basic-research (Austria) or nature-conservation (Great Britain and the Netherlands) funding organisations. They are either being published (British Plant Communities) or heading for publication of their first volumes within the next two years. The German vegetation survey is a voluntarily-based enterprise expected to complete its work by the end of this century. The experience gained by the management of these national surveys is of fundamental importance in launching the European Vegetation Survey (a project under preparation).