Molecular dating and diversification of the South American lizard genus Liolaemus (subgenus Eulaemus) based on nuclear and mitochondrial DNA sequences

The temperate South American lizard genus Liolaemus is the one of the most widely distributed and species‐rich genera of lizards on earth. The genus is divided into two subgenera, Liolaemus sensu stricto (the ‘Chilean group’) and Eulaemus (the ‘Argentino group’), a division that is supported by recent molecular and morphological data. Owing to a lack of reliable fossil data, previous studies have been forced to use either global molecular clocks, a standardized mutation rate adopted from previous studies, or the use of geological events as calibration points. However, simulations indicate that these types of assumptions may result in less accurate estimates of divergence times when clock‐like models or mutation rates are violated. We used a multilocus data set combined with a newly described fossil to provide the first calibrated phylogeny for the crown groups of the clade Eulaemus, and derive new fossil‐calibrated substitution rates (with error) of both nuclear and mtDNA gene regions for Eulaemus specifically. Divergence date estimates for each of the crown groups and appropriate rate estimates will provide the foundation for understanding rates of speciation, historical biogeography, and phylogeographical history for various clades in one of the most diverse lizard genera in the poorly studied Patagonian region. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 164 , 825–835.     

Genetic structure of a recent climate change‐driven range extension

The life‐history strategies of some species make them strong candidates for rapid exploitation of novel habitat under new climate regimes. Some early‐responding species may be considered invasive, and negatively impact on ‘naïve’ ecosystems. The barrens‐forming sea urchin Centrostephanus rodgersii is one such species, having a high dispersal capability and a high‐latitude range margin limited only by a developmental temperature threshold. Within this species’ range in eastern Australian waters, sea temperatures have increased at greater than double the global average rate. The coinciding poleward range extension of C. rodgersii has caused major ecological changes, threatening reef biodiversity and fisheries productivity. We investigated microsatellite diversity and population structure associated with range expansion by this species. Generalized linear model analyses revealed no reduction in genetic diversity in the newly colonized region. A ‘seascape genetics’ analysis of genetic distances found no spatial genetic structure associated with the range extension. The distinctive genetic characteristic of the extension zone populations was reduced population‐specific F_ST, consistent with very rapid population expansion. Demographic and genetic simulations support our inference of high connectivity between pre‐ and post‐extension zones. Thus, the range shift appears to be a poleward extension of the highly‐connected rangewide population of C. rodgersii. This is consistent with advection of larvae by the intensified warm water East Australian current, which has also increased Tasmanian Sea temperatures above the species’ lower developmental threshold. Thus, ocean circulation changes have improved the climatic suitability of novel habitat for C. rodgersii and provided the supply of recruits necessary for colonization.     

Chromosome numbers in wild and semidomesticated Brazilian Capsicum L. (Solanaceae) species: do x = 12 and x = 13 represent two evolutionary lines?

Chromosome numbers were determined in 29 accessions of wild and semidomesticated Capsicum species from the EMBRAPA Hortaliças (Brazil) germplasm collection. 2 n  = 24 was found in C. baccatum var. praetermissum , C. chinense , C. flexuosum and C. parvifolium , while C. buforum , C. campylopodium , C. cornutum , C. schottianum , C. villosum var. villosum and five other native south-eastern Brazilian species not yet taxonomically named all had 2 n  = 26 chromosomes. These are the first chromosome number determinations for C. cornutum , C. schottianum , C. villosum var. villosum and the five other Brazilian taxa. Our data confirm published data for C. baccatum var. praetermissum , C. campylopodium , C. chinense , C. flexuosum and C. parvifolium , but not for C. buforum . The prevalence of 2 n  = 26 chromosomes among Brazilian species, along with the morphological and ecological characteristics presented by the wild and semidomesticated species occurring in Brazil, form a pattern different from that found in Andean wild and semidomesticated species. This supports the hypothesis that there are two different evolutionary lines in the genus and that the native south-eastern Brazilian species belong to the ancestral Capsicum gene pool. © 2006 The Linnean Society of London, Botanical Journal of the Linnean Society , 2006, 151 , 259–269.     

Three fishes in one: cryptic species in an Amazonian floodplain forest specialist

Accurately describing biodiversity in tropical regions such as Amazonia is difficult because of insufficient morphological inventories and the lack of studies on the distribution of genetic diversity. Aquatic organisms from Amazonian flooded forests are generally expected to move laterally along the forests during the annual inundation cycle, a behaviour that should promote admixture of populations and reduce within‐drainage speciation. We used an unprecedented fine‐scale sampling effort and multiple DNA markers to quantify region‐wide population differentiation in an Amazonian floodplain forest specialist, the black‐wing hatchet fish Carnegiella marthae ( Myers, 1927 ). Our study revealed three previously unsuspected and ancient cryptic species of black‐wing hatchet fish in the Rio Negro floodplain (RNF), in central Amazonia. Two species produce occasional first‐generation hybrids. The third and rarer species, although found in extreme sympatry with another species, appears to be reproductively isolated, and also differs in external morphology and dentition. Our findings have important implications for guiding conservation management because C. marthae is harvested commercially in the RNF ornamental fishery. They also suggest that the diversity of Amazonian ichthyofauna is vastly underestimated, including that found in landscapes lacking contemporary barriers to account for population divergence and speciation. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2011, 102 , 391–403.     

Crocus imperati and Crocus suaveolens (Iridaceae), two controversial endemic crocuses from Central and Southern Italy – morphometrics,lectotypification and chorology

Crocus imperati Ten. and Crocus suaveolens Bertol. are the most controversial endemic crocuses in Italy; they have been interpreted by various authors as different species or infraspecific entities and their chorologies are afflicted by numerous misidentifications. This work, by means of an extensive in vivo study across the whole ranges of the two taxa, and using biometrical investigations, aims at clarifying their status. The names C. imperati and C. suaveolens are typified, several taxonomical complications are discussed and an accurate chorology is outlined. The results show that a single qualitative character is constant (the presence or absence of a bracteole) and two other characters allow discrimination in most cases; their combined use, therefore, ensures certain identification of any single individual. No hybrid individual or intermediate populations were detected and the distributional ranges of the two species were confirmed to be contiguous but not overlapping. As a consequence, treatment of the two taxa at specific level appears to be the most appropriate. © 2008 The Linnean Society of London, Botanical Journal of the Linnean Society, 2008, 158 , 194–214.