High‐density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool

In wheat, a lack of genetic diversity between breeding lines has been recognized as a significant block to future yield increases. Species belonging to bread wheat's secondary and tertiary gene pools harbour a much greater level of genetic variability, and are an important source of genes to broaden its genetic base. Introgression of novel genes from progenitors and related species has been widely employed to improve the agronomic characteristics of hexaploid wheat, but this approach has been hampered by a lack of markers that can be used to track introduced chromosome segments. Here, we describe the identification of a large number of single nucleotide polymorphisms that can be used to genotype hexaploid wheat and to identify and track introgressions from a variety of sources. We have validated these markers using an ultra‐high‐density Axiom^® genotyping array to characterize a range of diploid, tetraploid and hexaploid wheat accessions and wheat relatives. To facilitate the use of these, both the markers and the associated sequence and genotype information have been made available through an interactive web site.     

Phase II protocol for the evaluation of new treatments in patients with advanced gastric carcinoma: results of ECOG 5282

The study was a Phase II randomized study to evaluate the efficacy of new agents for the treatment of advanced gastric carcinoma. Patients were randomized to receive single agent chemotherapy with mitoxantrone, etoposide, aclacinomycin-A or spirogermanium. The patients were stratified by prior use of chemotherapy, prior doxorubicin use and ECOG performance status. Patients with a history of cardiac disease or prior doxorubicin exceeding a dose of 400 mg/m² were restrictively randomized to sopirogermanium or etoposide only. One hundred and fourteen patients were registered for the study. Among 98 evaluable patients there were only two partial responses (both in the etoposide arm), and one complete response in the mitoxantrone arm. The median survival on the study was 3.3 months. One hundred and six patients were analyzable for toxicity. There were four treatment-related deaths and four life-threatening toxicities. Because of low response rates and relatively high toxicities the studied compounds were not deemed worth further investigation for advanced gastric cancer.     

The influence of therapeutic radiation on the patterns of bone marrow in ovary-intact and ovariectomized mice

Background

The functional components of bone marrow (i.e., the hematopoietic and stromal populations) and the adjacent bone have traditionally been evaluated incompletely as distinct entities rather than the integrated system. We perturbed this system in vivo using a medically relevant radiation model in the presence or absence of ovarian function to understand integrated tissue interaction.

Methodology/Principal Findings

Ovary-intact and ovariectomized mice underwent either no radiation or single fractional 16 Gy radiation to the caudal skeleton (I±R, OVX±R). Marrow fat, hematopoietic cellularity, and cancellous bone volume fraction (BV/TV %) were assessed. Ovariectomy alone did not significantly reduce marrow cellularity in non-irradiated mice (OVX−R vs. I−R, p = 0.8445) after 30 days; however it impaired the hematopoietic recovery of marrow following radiation exposure (OVX+R vs. I+R, p = 0.0092). The combination of radiation and OVX dramatically increases marrow fat compared to either factor alone (p = 0.0062). The synergistic effect was also apparent in the reduction of hematopoietic marrow cellularity (p = 0.0661); however it was absent in BV/TV% changes (p = 0.2520). The expected inverse relationship between marrow adiposity vs. hematopoietic cellularity and bone volume was observed. Interestingly compared with OVX mice, intact mice demonstrated double the reduction in hematopoietic cellularity and a tenfold greater degree of bone loss for a given unit of expansion in marrow fat.

Conclusions/Significance

Ovariectomy prior to delivery of a clinically-relevant focal radiation exposure in mice, exacerbated post-radiation adipose accumulation in the marrow space but blunted bone loss and hematopoietic suppression. In the normally coupled homeostatic relationship between the bone and marrow domains, OVX appears to alter feedback mechanisms. Confirmation of this non-linear phenomenon (presumably due to differential radiosensitivity) and demonstration of the mechanism of action is needed to provide strategies to diminish the effect of radiation on exposed tissues.     

Spatial Behavior Comparison of Bactericera cockerelli Sulc. (Hemiptera: Triozidae) in Mexico

During the last five?years, Bactericera cockerelli Sulc. has caused significant economic losses in potato production in Mexico, due to the purple top and zebra chip diseases, since it acts as the vector of Candidatus Liberibacter psyllaurous. Despite its importance as a vector of serious potato diseases, the knowledge of its spatial distribution behavior, which could improve the efficiency of control measures, is entirely lacking. The main objective of this work was to compare the spatial distribution of the immature and adult stages of B. cockerelli obtained in a potato field by means of transect and quadrant sampling techniques and of geostatistics tools that allow the visualization of its spatial distribution in the field. Transect and quadrant samplings showed that the immature stages (eggs and nymphs) of B. cockerelli present a clustered distribution. The validation of the achieved semivariograms in the three dates of sampling corroborated the aggregated distribution of immatures and adults of the insect. The maps obtained in the sampling by using the quadrant or the transect approaches reflect the aggregated structure of the insect populations which did not infest 100% of the plot area. This allowed us to identify infested and free areas, what will aid in decisions for selecting alternatives of control.     

黑龙江和图们江流域菱属(Trapa L.)植物分布格局及形态多样性

菱属(Trapa L.)的系统分类一直存在较大分歧,至今还没有一个比较公认的分类系统。黑龙江和图们江流域是菱属物种多样性的重要分布区之一,为了揭示该流域菱属植物的地理分布格局和形态多样性,我们进行了大量实地调查和研究。结果显示,从该地区28个湖中共采集到菱属11个种及8个种内变异类型,表明它们具有丰富的形态多样性;结合查阅菱属354份标本资料,共获得92个分布地点数据;采集到的11个物种的地理分布格局呈不均衡性,其中细果野菱(Trapa maximowiczii Korsch.)分布最广,野菱(Trapa incisa Siebold et Zucc.)、兴凯菱(Trapa khankensis Pshennikova)和科热夫尼科夫菱(Trapa kozhevnikovirum Pshennikova)为狭域分布种;东部乌苏里江和图们江流域是菱属物种多样性的分布中心,可能是第四纪冰期避难所;菱属植物多数种间形态特性相对稳定,东北菱(Trapa manshurica Fler.)、耳菱(Trapa potaninii V.Vassil)、丘角菱(Trapa japonica Fler.)、西伯利亚菱(Trapa sibirica Fler.)和细果野菱共有8个种内形态变异类型;种群内多数分类性状稳定,种群间形态变异较明显;菱属植物分布格局不均衡和种内形态变异的形成可能与基因流的扩散限制有关。本研究结果为进一步澄清菱属分类混乱问题奠定了基础,进一步结合分子标记技术研究系统演化关系将对揭示菱属的进化历史具有重要意义。     

Host habitat assessment by a parasitoid using fungal volatiles

Background

The genus Mantella, endemic poison frogs of Madagascar with 16 described species, are known in the field of international pet trade and entered under the CITES control for the last four years. The phylogeny and phylogeography of this genus have been recently subject of study for conservation purposes. Here we report on the studies of the phylogeography of the Mantella cowani group using a fragment of 453 bp of the mitochondrial cytochrome b gene from 195 individuals from 21 localities. This group is represented by five forms: M. cowani, a critically endangered species, a vulnerable species, M. haraldmeieri, and the non-threatened M. baroni, M. aff. baroni, and M. nigricans.

Results

The Bayesian phylogenetic and haplotype network analyses revealed the presence of three separated haplotype clades: (1) M. baroni, M. aff. baroni, M. nigricans, and putative hybrids of M. cowani and M. baroni, (2) M. cowani and putative hybrids of M. cowani and M. baroni, and (3) M. haraldmeieri. The putative hybrids were collected from sites where M. cowani and M. baroni live in sympatry.

Conclusion

These results suggest (a) a probable hybridization between M. cowani and M. baroni, (b) a lack of genetic differentiation between M. baroni/M. aff. baroni and M. nigricans, (c) evidence of recent gene-flow between the northern (M. nigricans), eastern (M. baroni), and south-eastern (M. aff. baroni) forms of distinct coloration, and (d) the existence of at least three units for conservation in the Mantella cowani group.