Persistence and stability of macroinvertebrate communities in streams of Denali National Park, Alaska: implications for biological monitoring

1. Macroinvertebrate communities were studied from 1994 to 2001/2002 (except 1997) in six streams in Denali National Park, interior Alaska. All six streams were potential reference streams with no known impairment. 2. Abundance of individual taxa varied markedly from year to year. Overall, abundance decreased over the study period, particularly with respect to mayflies. Stonefly taxa showed lower persistence and were sometimes absent from a stream in any particular year. 3. Mean community persistence for the six streams, as measured by Jaccard's similarity coefficients between years, varied from 0.48 in the year pair 1999–2000 to 0.78 in 1998–99. Tattler Creek (a small stable stream) supported the most persistent macroinvertebrate community and Highway Pass Creek (a small, unstable creek) the least. Mean community persistence showed a significant relationship with mean winter snowfall (November to March) for the six streams. 4. The highest community compositional stability was found in Tattler Creek and the lowest in Highway Pass Creek, but stability varied markedly over time for the six streams, peaking in 1994–95 and reaching a minimum in 2000–01. Compositional stability was significantly related to the Pfankuch Index of channel stability. 5. The composition metrics % Chironomidae, % dominant taxa, %EPT, % Ephemeroptera and % Plecoptera, employed as part of the Alaska Stream Condition Index, varied over almost their entire range in these pristine streams across the 9 years of the study. 6. This study demonstrates the wide range of natural variation that occurs in benthic macroinvertebrate communities in these pristine central Alaskan streams, potentially limiting the applicability of composition metrics for the biological monitoring of water quality in these systems.     

Multiple determinants influence root colonization and induction of induced systemic resistance by Pseudomonas chlororaphis O6

Colonization of the roots of tobacco by Pseudomonas chlororaphis O6 induces systemic resistance to the soft-rot pathogen, Erwinia carotovora ssp. carotovara SCC1. A screen of the transposon mutants of P. chlororaphis O6 showed mutants with about a fivefold reduction in ability to induce systemic resistance to the soft-rot disease. These mutations disrupted genes involved in diverse functions: a methyl-accepting chemotaxis protein, biosynthesis of purines, phospholipase C, transport of branched-chain amino acids and an ABC transporter. Additional mutations were detected in the intergenic spacer regions between genes encoding a GGDEF protein and fumarate dehydratase, and in genes of unknown function. The mutants in the ABC transporters did not display reduced root colonization. However, the other mutants had up to 100-fold reduced colonization levels. Generally the production of metabolites important for interactions in the rhizosphere, phenazines and siderophores, was not altered by the mutations. A reduced induction of systemic resistance by a purine biosynthesis mutant with a disrupted purM gene correlated with poor growth rate, lesser production of phenazines and siderophore and low levels of root colonization. These studies showed that multiple determinants are involved in the induction of systemic resistance, with there being a requirement for strong root colonization.     

Unexpected problem in aphid DNA barcoding by universal primers

DNA barcode (mitochondrial COI) sequences have allowed for species identification of aphids. In this study, we newly found a DNA barcoding problem in a part of the DNA sequences for Sitobion avenae. Five S. avenae individuals showed differences of, on average, 32.60% in the DNA sequences from other conspecific individuals, and a BLAST search revealed that the five sequences are similar to those of aphid parasitoids such as Aphidius, Ephedrus and Praon spp. (Hymenoptera: Braconidae). Based on these results, we concluded that the universal primers used in aphid DNA barcodes can amplify barcode sequences from parasitoid species within host aphids.     

Insecticidal activities of Ginkgo biloba seed coat extracts against Spodoptera exigua (Lepidoptera: Noctuidae)

The present study relates to a methanol extract of the seed coat of Ginkgo biloba, and tested particularly on the third instar larvae of Spodoptera exigua. The extract was found to have an inhibitory effect on the growth of the larvae besides bringing a change in the nutrient reserves in the body of the insect. Topical application of five different doses of the methanol extract resulted in a mortal effect to third instar larvae of S. exigua that is very much dependent on the dose as well as duration of exposure. Lower doses revealed lower mortality after 24 h of application. At doses of 1.00, 2.00, 4.00, 8.00 and 16.00 ng/larva, mortalities were 9.25, 26.07, 50.32, 56.28 and 92.44%, respectively. The dose for 50% mortality (LD₅₀) of methanol extracts by applied by a topical method with 1 µL of acetone solution was 1.92 ng/larva. Nutrient reserves like protein, glycogen and lipid are known to regulate pupation and adult emergence. These reserves have been found to be lower in treated larvae, indicating the insecticidal role of methanol extracts from G. biloba against third instar larvae of S. exigua.     

Architectural design influences the diversity and structure of the built environment microbiome

Buildings are complex ecosystems that house trillions of microorganisms interacting with each other, with humans and with their environment. Understanding the ecological and evolutionary processes that determine the diversity and composition of the built environment microbiome—the community of microorganisms that live indoors—is important for understanding the relationship between building design, biodiversity and human health. In this study, we used high-throughput sequencing of the bacterial 16S rRNA gene to quantify relationships between building attributes and airborne bacterial communities at a health-care facility. We quantified airborne bacterial community structure and environmental conditions in patient rooms exposed to mechanical or window ventilation and in outdoor air. The phylogenetic diversity of airborne bacterial communities was lower indoors than outdoors, and mechanically ventilated rooms contained less diverse microbial communities than did window-ventilated rooms. Bacterial communities in indoor environments contained many taxa that are absent or rare outdoors, including taxa closely related to potential human pathogens. Building attributes, specifically the source of ventilation air, airflow rates, relative humidity and temperature, were correlated with the diversity and composition of indoor bacterial communities. The relative abundance of bacteria closely related to human pathogens was higher indoors than outdoors, and higher in rooms with lower airflow rates and lower relative humidity. The observed relationship between building design and airborne bacterial diversity suggests that we can manage indoor environments, altering through building design and operation the community of microbial species that potentially colonize the human microbiome during our time indoors.     

Waterfowl Nesting in Fall-Seeded and Spring-Seeded Cropland in Saskatchewan

Abstract: Waterfowl nesting in annual croplands has remained a little-known aspect of waterfowl nesting ecology because of the inability of many studies to systematically search this habitat through the nesting season. Where searches have been conducted, they are generally restricted to the period prior to seeding, and many nests found are destroyed by the seeding operation. Consequently, fall-seeded crops have been promoted as an alternative cropping practice that could increase nest survival of waterfowl nesting in croplands. During 1996–1999, we conducted 3–4 complete nest searches on 4,274 ha of cropland, including spring-seeded wheat and barley, winter wheat, and fall rye in southern Saskatchewan, Canada. Using suites of predictive models, we tested hypotheses regarding relative nest abundance and nest survival among crop types and tested the influence of several landscape-scale covariates on these metrics. Apparent nest densities were higher in fall-seeded crops (winter wheat: 0.39 nests/ha, fall rye: 0.25 nests/ha) than in spring-seeded crops (0.03 nests/ha), and nest density in spring-seeded croplands increased with percent cropland and percent wetland habitat in the surrounding landscape. Nest survival was higher in winter wheat (38%) than in either fall rye (18%) or spring-seeded crops (12%), and nest survival in spring-seeded crops increased with relative nest initiation date. Nest survival was unaffected by surrounding landscape characteristics but tended to be higher in years of average wetness. Based on our findings, winter wheat and fall rye have the potential to provide productive nesting habitat for ≥7 species of upland nesting ducks and fall-seeded crops are a conservation tool well suited to highly cropped landscapes.     

非晶状体βγ-晶状体蛋白的研究进展

βγ-晶状体蛋白是主要分布于脊椎动物眼睛晶状体内的水溶性结构蛋白。非晶状体βγ-晶状体蛋白从微生物到高等哺乳动物都有过报道。微生物中发现的非晶状体βγ-晶状体蛋白主要作为环境胁迫应急蛋白,在恶劣环境中发挥对细菌的自我保护作用,如ProteinS。在哺乳动物中,非晶状体βγ-晶状体蛋白被推测能够参与胚胎的皮肤发育与分化调节,具有肿瘤抑制等重要的生理功能,如黑色素瘤缺失蛋白。但是,对于它们的生化特性、生理功能和作用机制知之甚少。本文从蛋白结构、基因起源和生物学功能等方面简要介绍目前非晶状体βγ-晶状体蛋白的相关研究进展。     

人精液凝固蛋白SgI-52的表达与抗菌活性研究

以人精囊腺cDNA为模板,用嵌套式PCR技术扩增出编码成熟人精液凝固蛋白I(semenogelin I,SgI)第85–136位氨基酸(SgI-52)的核苷酸序列并将其插入载体pMAL-p2X中,成功构建的表达载体pMAL-p2X/SgI-52转化大肠杆菌DH5α后,重组融合蛋白诱导表达于大肠杆菌周质中。经第X因子剪切及超滤处理,得到表达的重组SgI-52。质谱分析结果证明重组SgI-52为目的肽。重组人SgI-52对大肠杆菌ATCC25922标准株以及耐氨苄标准株ML-35P的最低抑制浓度MIC分别为32.45以及46.30?μg/mL。我们的结果及相关研究提示在人精液液化过程中人精液凝固蛋白I的不同降解产物可能行使不同的生物学功能,值得进行深入研究。