Complete Genome Sequence Analysis of Human Echovirus Type 30 Isolated in China

We report here the complete genome sequence of a human echovirus type 30 strain ECV30/GX10/05 isolated in Guangxi, China, in 2010. Phylogenetic analysis showed that ECV30/GX10/05 was closely related to a Korean strain isolated in 2008. The sequence information will help in an understanding of the molecular epidemiology and evolution of echovirus.     

鲤IGF2b基因5'侧翼区序列克隆及不同鲤该区域GC富集区的甲基化分析

鲤(Cyprinus carpio)胰岛素样生长因子2b(insulin-like growth factor 2b,IGF2b)基因为鲤IGF基因家族重要的成员,已有的研究表明5'侧翼区序列对其功能的发挥有重要作用。因此,采用基因组步移法获取5'侧翼区序列,通过亚硫酸盐修饰的方法分析不同品种该区域GC富集区的甲基化状况。本文成功从鲤基因组DNA中获得695 bp的IGF2b 5'侧翼区序列。已获取的IGF2b 5'侧翼区序列经过TFSEARCH分析后发现了多个转录因子结合位点和TATA框,通过BLAST比对发现,鲤IGF2b 5'侧翼区DNA序列与斑马鱼(Danio rerio)IGF2b基因相比,相似性为87%。检测该区域富含GC的序列17个位点,发现建鲤(C.c.var.jian)有2个个体的3个位点出现甲基化,而黄河鲤(C.c.haematopterus)只有1个个体1个位点出现甲基化,这说明2个品种鲤在这个区域出现甲基化修饰的几率低,也验证了这2品种在该基因该区域GC富集区是稳定的。     

The mechanism of background extinction

Following publication of On the Origin of Species, biologists concentrated on and resolved the mechanisms of adaptation and speciation, but largely ignored extinction. Thus, extinction remained essentially a discipline of palaeontology. Adequate language is not available to describe extinction phenomena because they must be discussed in the passive voice, wherein populations simply ‘go extinct’ without reference to process, specifics, effects, or causality. Extinction is also described typically in terms of its dynamics (including rate or risk), and although correlative variables enhance our ability to predict extinction, they do not necessarily enable an understanding of process. Yet background extinction, like evolution, is a process requiring a functional explanation, without which it is impossible to formulate mechanisms. We define the mechanism of background extinction as a typically long‐term, multi‐generational loss of reproductive fitness. This simple concept has received little credence because of a perception that excess generation of progeny ensures population sustainability, and perhaps the misconception that the loss of reproductive fitness somehow constitutes selection against reproduction itself. During environmental shifts, reproductive fitness is compromised when biotic or abiotic extremes consistently exceed existing norms of reaction. Subsequent selection will now favour individual survival over reproductive fitness, initiating long‐term negative selection pressure and population decline. Background extinction consists typically of two intergrading phases: habitat attenuation and habitat dissolution. These processes generate the relict populations that characterize many species undergoing background extinction. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 105 , 255–268.     

高效液相色谱法测定重组人干扰素α-2b注射液中乙二胺四乙酸二钠含量

目的:利用高效液相色谱(HPLC)法测定重组人干扰素α-2b注射液中EDTA二钠(乙二胺四乙酸二钠)的含量。方法:将EDTA二钠与氯化铁溶液于70℃水浴中反应20 min左右;色谱柱为SunFire C18(250 mm×4.6 mm,5μm,Waters),流动相为5%甲醇+95%0.64 g/L四丁基溴化铵和4.1 g/L三水合乙酸钠混合液,用冰乙酸调pH值至4.0,流速1 mL/min,检测波长254 nm。结果:该测定方法线性范围为0.025~0.5 g/L,线性关系良好(r=0.9997),加样回收率为98.27%(n=9,RSD=2.55%)。结论:本方法准确、快速、可靠,可用于重组人干扰素α-2b注射液中EDTA二钠含量的测定。     

Artificial selection on allometry: change in elevation but not slope

To what extent within-species (static) allometries constitute a constraint on evolution is the subject of a long-standing debate in evolutionary biology. A prerequisite for the constraint hypothesis is that static allometries are hard to change. Several studies have attempted to test this hypothesis with artificial-selection experiments, but their results remain inconclusive due to various methodological issues. Here, we present results from an experiment in which we selected independently on the slope and the elevation of the allometric relationship between caudal-fin size and body size in male guppies (Poecilia reticulata). After three episodes of selection, the allometric elevation (i.e. intercept at constant slope) had diverged markedly between the lines selected to increase or decrease it, and showed a realized heritability of 50%. In contrast, the allometric slope remained unaffected by selection. These results suggest that the allometric elevation is more evolvable than the allometric slope, this latter representing a potential constraint on adaptive trait evolution. To our knowledge, this study is the first artificial-selection experiment that directly tests the evolvability of static allometric slopes.     

Piping Plover Chick Foraging,Growth, and Survival in the Great Plains

Abstract: We tested the hypothesis that piping plover (Charadrius melodus) habitat quality and chick survival on the Missouri River, USA, were lower on a cold-water reservoir and downstream from a hypolimnetic (cold-water) release dam with diel water fluctuations (Garrison Dam) than downstream from an epilimnetic dam (Gavins Point Dam). Plovers in adjacent alkali wetlands provided an index to the maximum reproductive potential in the region. Chicks gained weight more rapidly in the alkali wetlands than on epilimnetic and hypolimnetic river reaches. Invertebrate numbers and biomass were higher in the wetlands and epilimnetic reach, but chick survival was lower on the epilimnetic reach. Thus, piping plovers adapted to a variety of prey densities, and other factors, likely predation, reduced survival rates in the epilimnetic reach. Temporal and spatial variability in site quality indices suggests the need for a regional management strategy with different strategies at each site. Managers can minimize effects of local fluctuations in resource abundance and predators by ensuring protection of or creating geographically dispersed habitat. (JOURNAL OF WILDLIFE MANAGEMENT 72(3):682–687; 2008)     

油菜叶片蛋白质组对机械损伤应答的初步分析

 植物在对抗昆虫的长期进化过程中形成了自我防御机制,能够产生特异的抗性蛋白来应对昆虫的取食。该文用机械损伤模拟害虫取食,研究和 对比了油菜(Brassica napus cv. Westar)在机械损伤前后可溶性总蛋白的含量变化并试图通过蛋白质组学技术来检测可能发生变化的蛋白质。 蛋白质定量检测发现,同一植株同一叶片损伤前后可溶性总蛋白含量差异显著,损伤后蛋白表达量增高。 蛋白质双向凝胶电泳及其差异显示分 析损伤前后的蛋白质组,表明有8个蛋白质点发生明显的上调或下调。选择其中2个差异蛋白点经过MALDI-TOF质谱鉴定,它们分别是Rubisco小 亚基前体、果糖-1,6-二磷酸醛缩酶和粪卟啉-3-氧化酶,这些蛋白质可能在油菜叶片应答机械损伤过程中对维持植物的生理功能起到重要作用 。     

双价抗病基因导入籽瓜的遗传转化研究

以籽瓜主栽品种新籽瓜2号、五原籽瓜等为研究材料,用苗龄1-3d的子叶切块作外植体,不定芽诱导培养基为MS 6-BA2mg/L IBA 0.1mg/L,芽伸长培养基为MS KT0．2mg／L,诱导生根的培养基是MS IAA0．5mg／L。籽瓜遗传转化研究结果表明农杆菌感染时间以10min,共培养时间以2d为合适。共获得抗卡那霉素100mg／L的试管苗41个,PCR检测呈阳性的有15株,转化率为34．9％。该研究初步建立了籽瓜的遗传转化体系和转化体的检测体系。     

外源质粒pcDNA3s疫苗在小鼠体内组织代谢动力学研究

为分析外源质粒pcDNA3s肌肉注射后在小鼠体内的组织分布及评价整合到宿主基因组上的可能性．通过PCR方法检测质粒pcDNA3s经肌肉注射在各组织中的分布及随时间变化的情况．检测外源质粒在基因组DNA上的整合情况．注射后3h所有的组织均能检测到质粒,至第3周时只有胸腺和生殖器官能检测到质粒的存在,至第6周后各组织均为阴性、各组织基因组DNA经PCR扩增均为阴性．肌注外源质粒后,外源质粒在小鼠细胞内逐渐被清除,外源质粒不会整合到宿主染色体上．     

森林城市景观格局与热环境的关系——以龙泉市为例

景观格局分异特征在相当程度上影响着城市热环境.本研究以国家森林城市龙泉市为对象,通过地温反演和空间分析反映9类景观温度特征,运用景观格局分析方法从1～3.5 km 6个尺度探索格局指数与热环境的相关性.结果表明: 龙泉市高温区及次高温区主要分布于东北至西南一带,以城乡居民地为主,低温区和次低温区主要分布于西北、东南区域,以公益林为主;对海拔700 m以下区域各景观类型地表温度的统计发现,针叶林地、阔叶林地、针阔混交林地、竹林地、水域的地温均值相对较低,灌木林地、其他林地、耕地、建设用地的地温均值相对较高;对景观格局与热环境的分析发现,类型水平格局指数较景观水平格局指数更具实际意义,建设用地与热环境的相关系数可达0.835,针叶林地、阔叶林地、针阔混交林地、水域次之,在-0.5～-0.4,不同林地类型的降温效果在空间尺度上的表达不同,阔叶林地、针阔混交林地更利于在大尺度上降温;林地的面积和蓄积量越大,越易出现地表温度低值.