Genetic diversity,population structure and sex‐biased dispersal in three co‐evolving species

Genetic diversity and spatial structure of populations are important for antagonistic coevolution. We investigated genetic variation and population structure of three closely related European ant species: the social parasite Harpagoxenus sublaevis and its two host species Leptothorax acervorum and Leptothorax muscorum. We sampled populations in 12 countries and analysed eight microsatellite loci and an mtDNA sequence. We found high levels of genetic variation in all three species, only slightly less variation in the host L. muscorum. Using a newly introduced measure of differentiation (Jost’s D_est ), we detected strong population structuring in all species and less male‐biased dispersal than previously thought. We found no phylogeographic patterns that could give information on post‐glacial colonization routes – northern populations are as variable as more southern populations. We conclude that conditions for Thompson’s geographic mosaic of coevolution are ideal in this system: all three species show ample genetic variation and strong population structure.     

In defence of model‐based inference in phylogeography

Recent papers have promoted the view that model‐based methods in general, and those based on Approximate Bayesian Computation (ABC) in particular, are flawed in a number of ways, and are therefore inappropriate for the analysis of phylogeographic data. These papers further argue that Nested Clade Phylogeographic Analysis (NCPA) offers the best approach in statistical phylogeography. In order to remove the confusion and misconceptions introduced by these papers, we justify and explain the reasoning behind model‐based inference. We argue that ABC is a statistically valid approach, alongside other computational statistical techniques that have been successfully used to infer parameters and compare models in population genetics. We also examine the NCPA method and highlight numerous deficiencies, either when used with single or multiple loci. We further show that the ages of clades are carelessly used to infer ages of demographic events, that these ages are estimated under a simple model of panmixia and population stationarity but are then used under different and unspecified models to test hypotheses, a usage the invalidates these testing procedures. We conclude by encouraging researchers to study and use model‐based inference in population genetics.     

New insights on systematics and phylogenetics of Mediterranean Blaps species (Coleoptera: Tenebrionidae: Blaptini), assessed through morphology and dense taxon sampling

The genus Blaps is an emblematic group of large flightless beetles adapted to semi‐arid and arid environments. About 230 species have been described in the subgenus Blaps, which is the largest of the four extant subgenera. Within this subgenus, one large group of morphologically homogeneous species is of particular interest, and comprises the species formerly assigned to Seidlitz's division one. Strikingly, almost all species in this group are endemic to the Mediterranean basin, whereas the remaining Blaps species are mostly distributed in Asia. Here we present the first phylogenetic hypothesis for the Mediterranean Blaps and several taxonomic clarifications for the North African species belonging to this group. Based on careful examination of almost all type material and thousands of specimens for all known species and subspecies (initially 65 taxa), seven lectotypes are designated and six new synonymies are established: Blaps heydeni Allard, 1880 = Blaps heydenissp. taciturna Peyerimhoff syn.n. , Blaps emondi Solier = Blaps nitidula Solier syn.n. , Blaps tripolitanica Karsch = Blaps vialattei Peyerimhoff syn.n. , Blaps bifurcata strauchi Reiche = Blaps bifurcata ssp. gridellii Pierre syn.n. , Blaps cognata Solier = Blaps schweinfurhtii Seidlitz syn.n. and Blaps judaeorum Miller = Blaps pharao Seidlitz syn.n. Among the examined material, five species are also new for science and are assigned to extant species group. To infer species relationships, a morphological character matrix was assembled and analysed using both parsimony and probabilistic methods. All analyses yielded a similar and repeatable phylogenetic pattern, which allows us to discuss the systematics of the Mediterranean endemic species, the limit of extant species groups and to clarify the taxonomic status of several ambiguous taxa. We also reveal the existence of a large clade that encompasses the eastern Mediterranean species that are also mostly associated with arid regions. This clade is embedded within a second group that corresponds to western Mediterranean species, which are generally found in semi‐arid regions. Finally, we discuss the relevance of species groups in relation to their geographic distribution. This work represents a first step for further studies in taxonomy, systematics and historical biogeography of Blaps species.     

Cancer as a consequence of the rising level of oxygen in the Late Precambrian

The origin of multicelled animal life required collagen-family molecules whose own formation depended on the availability of molecular oxygen. Cancers, by contrast, are characterized by their low use of oxygen. In discussing the relationship between the origin of multicelled life and the origin of cancer, it is useful to think in terms of tissues rather than individual cells or complete animals. When animal tissues are disturbed, their constituent cells may be partially released from the constraints of multicellularity. This permits or obliges cells to reactivate anaerobic metabolic ways used by their single-celled ancestors in the oxygen-deficient Precambrian seas. Inhibition or loss of cell respiration under such circumstances may cause reversion to glycolytic fermentation, a less efficient metabolic style that generates waste products that are retained, thereby producing excess cell-growth. Distortion of tissue architecture may ensue with impairment of cell-to-cell adhesion, thereby liberating individual cells. Cells freed from tissue constraints undergo Darwinian variation which leads to loss of differentiation and produces cell types that are incompatible with the normal functioning of tissues. These steps, which may manifest themselves as carcinogenesis, are not reversible by restoration of oxygen and in effect constitute a demergence from the metazoan state. The existence of cancer among diverse phyla and especially among domesticated animals, suggests that the risk of cancer may be an initial condition of complex multicellular life and that it remains preferentially associated with newly modified designs. If so, there would be therapeutic strategies that have not yet been adequately considered. □ Cambrian explosion, cancer, cell differentiation, collagen, glycolysis, hard parts, metazoan origins.     

The use of CO2 flux measurements in models of the global terrestrial carbon budget

CO₂ flux measurements give access to two critical terms of the carbon budget of terrestrial ecosystems, the gross primary productivity (GPP) and the net ecosystem productivity (NEP). CO₂ fluxes measured by micrometeorological methods have spatial and temporal characteristics that make them potentially useful in modelling the global terrestrial carbon budget. The first use is in parameterizing ecosystem physiological processes. We present an example, based on parameterizing the mean light response of GPP. This parameterization can be used in diagnostic, satellite-based GPP models. A global application leads to realistic estimates of global GPP. The second use is in testing the seasonality of fluxes predicted by global models. Our example of this use tests two global GPP models. One is a diagnostic, satellite-based model, and one is a prognostic, process-based model. Despite the limitations of the models, both agree reasonably well with the measurements. The agreements and disagreements are useful in addressing the problems of available input datasets and representation of processes, in global models. Long-term CO₂ flux measurements give access to key variables of terrestrial vegetation models and therefore offer exciting perspectives.     

Importance of denitrifiers lacking the genes encoding the nitrous oxide reductase for N2O emissions from soil

Analyses of the complete genomes of sequenced denitrifying bacteria revealed that approximately 1/3 have a truncated denitrification pathway, lacking the nosZ gene encoding the nitrous oxide reductase. We investigated whether the number of denitrifiers lacking the genetic ability to synthesize the nitrous oxide reductase in soils is important for the proportion of N₂O emitted by denitrification. Serial dilutions of the denitrifying strain Agrobacterium tumefaciens C58 lacking the nosZ gene were inoculated into three different soils to modify the proportion of denitrifiers having the nitrous oxide reductase genes. The potential denitrification and N₂O emissions increased when the size of inoculated C58 population in the soils was in the same range as the indigenous nosZ community. However, in two of the three soils, the increase in potential denitrification in inoculated microcosms compared with the noninoculated microcosms was higher than the increase in N₂O emissions. This suggests that the indigenous denitrifier community was capable of acting as a sink for the N₂O produced by A. tumefaciens. The relative amount of N₂O emitted also increased in two soils with the number of inoculated C58 cells, establishing a direct causal link between the denitrifier community composition and potential N₂O emissions by manipulating the proportion of denitrifiers having the nosZ gene. However, the number of denitrifiers which do not possess a nitrous oxide reductase might not be as important for N₂O emissions in soils having a high N₂O uptake capacity compared with those with lower. In conclusion, we provide a proof of principle that the inability of some denitrifiers to synthesize the nitrous oxide reductase can influence the nature of the denitrification end products, indicating that the extent of the reduction of N₂O to N₂ by the denitrifying community can have a genetic basis.     

Regulation of G Protein-Coupled Receptor Signaling by A-Kinase Anchoring Proteins

Specificity of transduction events is controlled at the molecular level by scaffold, anchoring, and adaptor proteins, which position signaling enzymes at proper subcellular localization. This allows their efficient catalytic activation and accurate substrate selection. A-kinase anchoring proteins (AKAPs) are group of functionally related proteins that compartmentalize the cAMP-dependent protein kinase (PKA) and other signaling enyzmes at precise subcellular sites in close proximity to their physiological substrate(s) and favor specific phosphorylation events. Recent evidence suggests that AKAP transduction complexes play a key role in regulating G protein-coupled receptor (GPCR) signaling. Regulation can occur at multiple levels because AKAPs have been shown both to directly modulate GPCR function and to act as downstream effectors of GPCR signaling. In this minireview, we focus on the molecular mechanisms through which AKAP-signaling complexes modulate GPCR transduction cascades.