High-level phylogeny of early Tertiary rodents: dental evidence

Major crown‐groups of rodents were well established in the early Tertiary, and fossils provide an invaluable window into their evolutionary history. The main focus of this project was to perform a cladistic assessment of the dental evidence for early Tertiary rodent cladogenesis – the masticatory apparatus and teeth are the most frequently preserved anatomical features in the fossil record. We focused on groups that existed in a period corresponding to their early history, combining fossils belonging to extinct lineages and to stem‐groups leading to modern lineages. While the monophyly of some groups is not systematically explored, our results have important implications for high‐level rodent relationships and systematics. These results are consistent with those of recent molecular phylogenies and reliably congruent with the stratigraphic record, thus enhancing the pertinence of dental characters for phylogenetic inference. Our approach provides evidence of a fundamental dichotomy in early rodent history. Two major clades have been identified: (1) the earliest ‘ctenodactyloid’ (Ctenodactylidae, Chapattimyidae, Yuomyidae, Diatomyidae) and hystricognathous (Tsaganomyidae, Baluchimyinae, ‘phiomorphs’, ‘caviomorphs’) rodents, and (2) the earliest ‘ischyromyoid’ rodents with their closest relatives (Muroidea + Dipodoidea + Geomyoidea + Anomaluroidea + Castoroidea + Sciuravidae + Gliroidea, and Sciuroidea + Aplodontoidea + Theridomorpha). This topology has led us to endorse Ctenohystrica as the first clade and propose a new taxon, Ischyromyiformes, for the second. Although minimized in our working hypothesis, the homoplasy in dental characters remains significant. However, a number of homoplasic characters reveal structuring in their internal distribution, allowing us to discern evolutionary morphological patterns, notably the pentalophodonty of molars, zygomasseteric complex and incisor enamel microstructure. © 2004 The Linnean Society of London, Zoological Journal of the Linnean Society, 2004, 142 , 105–134.     

Genetic diversity,population structure and sex‐biased dispersal in three co‐evolving species

Genetic diversity and spatial structure of populations are important for antagonistic coevolution. We investigated genetic variation and population structure of three closely related European ant species: the social parasite Harpagoxenus sublaevis and its two host species Leptothorax acervorum and Leptothorax muscorum. We sampled populations in 12 countries and analysed eight microsatellite loci and an mtDNA sequence. We found high levels of genetic variation in all three species, only slightly less variation in the host L. muscorum. Using a newly introduced measure of differentiation (Jost’s D_est ), we detected strong population structuring in all species and less male‐biased dispersal than previously thought. We found no phylogeographic patterns that could give information on post‐glacial colonization routes – northern populations are as variable as more southern populations. We conclude that conditions for Thompson’s geographic mosaic of coevolution are ideal in this system: all three species show ample genetic variation and strong population structure.     

Tillering Responses to the Light Environment and to Defoliation in Populations of Perennial Ryegrass (Lolium perenneL.) Selected for Contrasting Leaf Length

Tillering responses to the light environment and to defoliationwere studied in two populations of perennial ryegrass (LoliumperenneL.) selected for contrasting leaf lengths. The objectiveof this study was to determine whether differences in tilleringresponses between populations, as a result of management practices,affected their competitive ability. Young seedlings were exposed,under controlled conditions, to defoliation, neutral shading(decreased photosynthetic photon flux), low red:far-red ratioand/or decreased blue light. Selection for longer leaves reducedthe tillering rate. After defoliation, this difference betweenshort- and long-leaved populations was magnified. Defoliationdecreased both site filling and phyllochron of the long-leavedpopulation but had no effect on the short-leaved population.Lowering the photosynthetic photon flux reduced the phyllochronin both population. Decreasing the red:far-red ratio reducedtillering rate by reducing site filling, whereas decreasingblue light had no significant effects on tillering. Tilleringresponses to photosynthetic photon flux and to red:far-red ratiowere similar in the two populations selected for contrastingleaf length. The implication of these tillering responses indefining the competitive ability of the grass plants is discussedin relation to their management.Copyright 1999 Annals of BotanyCompany Blue light, defoliation, far-red, irradiance, leaf size,Lolium perenne(L.), perennial ryegrass, photomorphogenesis, phyllochron, shading, site filling, tiller production.     

Importance of denitrifiers lacking the genes encoding the nitrous oxide reductase for N2O emissions from soil

Analyses of the complete genomes of sequenced denitrifying bacteria revealed that approximately 1/3 have a truncated denitrification pathway, lacking the nosZ gene encoding the nitrous oxide reductase. We investigated whether the number of denitrifiers lacking the genetic ability to synthesize the nitrous oxide reductase in soils is important for the proportion of N₂O emitted by denitrification. Serial dilutions of the denitrifying strain Agrobacterium tumefaciens C58 lacking the nosZ gene were inoculated into three different soils to modify the proportion of denitrifiers having the nitrous oxide reductase genes. The potential denitrification and N₂O emissions increased when the size of inoculated C58 population in the soils was in the same range as the indigenous nosZ community. However, in two of the three soils, the increase in potential denitrification in inoculated microcosms compared with the noninoculated microcosms was higher than the increase in N₂O emissions. This suggests that the indigenous denitrifier community was capable of acting as a sink for the N₂O produced by A. tumefaciens. The relative amount of N₂O emitted also increased in two soils with the number of inoculated C58 cells, establishing a direct causal link between the denitrifier community composition and potential N₂O emissions by manipulating the proportion of denitrifiers having the nosZ gene. However, the number of denitrifiers which do not possess a nitrous oxide reductase might not be as important for N₂O emissions in soils having a high N₂O uptake capacity compared with those with lower. In conclusion, we provide a proof of principle that the inability of some denitrifiers to synthesize the nitrous oxide reductase can influence the nature of the denitrification end products, indicating that the extent of the reduction of N₂O to N₂ by the denitrifying community can have a genetic basis.     

The importance of cytotaxonomy in understanding the biogeography of African rodents: Lake Chad murids as an example

1. Due to the existence of numerous morphologically sibling species among African rodent genera, cytogenetical analyses are essential for correct taxonomic identifications. As an illustration, karyotypes of rodents captured in the Lake Chad area were systematically conducted, to determine them unambiguously. 2. Thirteen species were found, giving a list of at least 18 species in total for the whole Lake Chad region when previously published data were critically re‐examined. Gerbilline rodents dominate in this Sahelian region, with five species of Gerbillus, four of Taterillus, two of Tatera and Desmodilliscus braueri, and six species of murine rodents were also counted. Moreover, two species of Taterillus appeared characterized by unique and hitherto unknown karyotypes, and undoubtedly represent new species. 3. The Lake Chad area, although poorly studied from a biogeographical point of view, occupies a central position in the northern half of Africa which makes its zoogeographical affinities interesting to evaluate. Analysis of the biogeographical characteristics of the rodent species recorded here leads to the conclusion that the murid rodent community of the Lake Chad region is of mixed origin, with a dominant West African component. However, the presence of two species considered as endemics (Mastomys verheyeni and Taterillus lacustris), combined with our discovery of two new chromosomal species of Taterillus, suggest that this region may have acted as a centre of differentiation in relatively recent times, perhaps reflecting the extensive variations of the Lake Chad basin associated with Plio‐Pleistocene cycles of transgression–regression. 4. Without chromosomal data, most of these findings would have remained weakly supported, or even undiscovered, as between five and eight species could have been overlooked.     

New insights on systematics and phylogenetics of Mediterranean Blaps species (Coleoptera: Tenebrionidae: Blaptini), assessed through morphology and dense taxon sampling

The genus Blaps is an emblematic group of large flightless beetles adapted to semi‐arid and arid environments. About 230 species have been described in the subgenus Blaps, which is the largest of the four extant subgenera. Within this subgenus, one large group of morphologically homogeneous species is of particular interest, and comprises the species formerly assigned to Seidlitz's division one. Strikingly, almost all species in this group are endemic to the Mediterranean basin, whereas the remaining Blaps species are mostly distributed in Asia. Here we present the first phylogenetic hypothesis for the Mediterranean Blaps and several taxonomic clarifications for the North African species belonging to this group. Based on careful examination of almost all type material and thousands of specimens for all known species and subspecies (initially 65 taxa), seven lectotypes are designated and six new synonymies are established: Blaps heydeni Allard, 1880 = Blaps heydenissp. taciturna Peyerimhoff syn.n. , Blaps emondi Solier = Blaps nitidula Solier syn.n. , Blaps tripolitanica Karsch = Blaps vialattei Peyerimhoff syn.n. , Blaps bifurcata strauchi Reiche = Blaps bifurcata ssp. gridellii Pierre syn.n. , Blaps cognata Solier = Blaps schweinfurhtii Seidlitz syn.n. and Blaps judaeorum Miller = Blaps pharao Seidlitz syn.n. Among the examined material, five species are also new for science and are assigned to extant species group. To infer species relationships, a morphological character matrix was assembled and analysed using both parsimony and probabilistic methods. All analyses yielded a similar and repeatable phylogenetic pattern, which allows us to discuss the systematics of the Mediterranean endemic species, the limit of extant species groups and to clarify the taxonomic status of several ambiguous taxa. We also reveal the existence of a large clade that encompasses the eastern Mediterranean species that are also mostly associated with arid regions. This clade is embedded within a second group that corresponds to western Mediterranean species, which are generally found in semi‐arid regions. Finally, we discuss the relevance of species groups in relation to their geographic distribution. This work represents a first step for further studies in taxonomy, systematics and historical biogeography of Blaps species.