Organization of the Euplotes crassus Micronuclear Genome1

Euplotes crassus, like other hypotrichous ciliated protozoa, eliminates most of its micronuclear chromosomal DNA in the process of forming the small linear DNA molecules that comprise the macronuclear genome. By characterizing randomly selected lambda phage clones of E. crassus micronuclear DNA, we have determined the distribution of repetitive and unique sequences and the arrangement of macronuclear genes relative to eliminated DNA. This allows us to compare the E. crassus micronuclear genome organization to that of another distantly related hypotrichous ciliate, Oxytricha nova. The clones from E. crassus segregate into three prevalent classes: those containing primarily eliminated repetitive DNA (Class I); those containing macronuclear genes in addition to repetitive sequences (Class II); and those containing only eliminated unique sequence DNA (Class III). All of the repetitive sequences in these clones belong to the same highly abundant repetitive element family. Our results demonstrate that the sequence organization of the E. crassus and O. nova micronuclear genomes is related in that the macronuclear genes are clustered together in the micronuclear genome and the eliminated unique sequences occur in long stretches that are uninterrupted by repetitive sequences. In both organisms a single repetitive element family comprises the majority of the eliminated interspersed middle repetitive DNA and appears to be preferentially associated with the macronuclear sequence clusters. The similarities in the sequence organization in these two organisms suggest that clustering of macronuclear genes plays a role in the chromosome fragmentation process.     

Genetic structure of a novel biofuel-producing microorganism community

Biofuels are an important alternative, renewable source of energy in the face of the ongoing depletion of fossil fuels. Cheese whey is a dairy industry waste characterized by high lactose concentration, which represents a significant environmental problem. Bio-ethanol production by cheese whey could be an effective nonvegetable source for renewable energy production. Here, we report the isolation of a mixed microbial population, able to produce ethanol as main fermentation product from fermenting whey. The microbial consortium has been used to perform a batch fermentation of crude whey in both anoxic and hypoxic conditions. Maximum ethanol concentrations achieved in this study was obtained using the mixed culture in hypoxic conditions, grown at pH 4 and 30°C, with ethanol production yield of 60 g/L. Our research has pointed out an alternative way to both dispose and valorize cheese whey, a dairy by-product that could cause water pollution and harm to the environment if not properly treated.     

The Shifting Middle Ground: Amazonian Indians and Eco-Politics

Over the past decade in Brazil, the convergence between international environmentalism and indigenous cultural survival concerns led to an unprecedented internationalization of local A native struggles. The Indian-environmentalist alliance has benefited both parties, but recent events suggest that it may be unstable and may pose political risks for native people. The limitations of transnational symbolic politics as a vehicle for indigenous activism reflect tensions and contradictions in outsiders' symbolic constructions of Indian identity.     

Diurnal fluctuations of dissolved nitrous oxide (N2O) concentrations and estimates of N2O emissions from a spring-fed river: implications for IPCC methodology

There is uncertainty in the estimates of indirect nitrous oxide (N₂O) emissions as defined by the Intergovernmental Panel on Climate Change (IPCC). The uncertainty is due to the challenge and dearth of in situ measurements. Recent work in a subtropical stream system has shown the potential for diurnal variability to influence the downstream N transfer, N form, and estimates of in‐stream N₂O production. Studies in temperate stream systems have also shown diurnal changes in stream chemistry. The objectives of this study were to measure N₂O fluxes and dissolved N₂O concentrations from a spring‐fed temperate river to determine if diurnal cycles were occurring. The study was performed during a 72 h period, over a 180 m reach, using headspace chamber methodology. Significant diurnal cycles were observed in radiation, river temperature and chemistry including dissolved N₂O‐N concentrations. These data were used to further assess the IPCC methodology and experimental methodology used. River NO₃‐N and N₂O‐N concentrations averaged 3.0 mg L⁻¹ and 1.6 μg L⁻¹, respectively, with N₂O saturation reaching a maximum of 664%. The N₂O‐N fluxes, measured using chamber methodology, ranged from 52 to 140 μg m⁻² h⁻¹ while fluxes predicted using the dissolved N₂O concentration ranged from 13 to 25 μg m⁻² h⁻¹. The headspace chamber methodology may have enhanced the measured N₂O flux and this is discussed. Diurnal cycles in N₂O% saturation were not large enough to influence downstream N transfer or N form with variability in measured N₂O fluxes greater and more significant than diurnal variability in N₂O% saturation. The measured N₂O fluxes, extrapolated over the study reach area, represented only 6 × 10⁻⁴% of the NO₃‐N that passed through the study reach over a 72 h period. This is only 0.1% of the IPCC calculated flux.     

Spatial distribution, seston removal, and potential competitive interactions of the bivalves Corbicula fluminea and Elliptio complanata, in a coastal plain stream

SUMMARY.

• 1 Within the past 10 years the introduced exotic bivalve, Corbicula fluminea, has spread from the Savannah River through a riverine swamp into a third-order blackwater tributary on the Savannah River Site (SRS). We examined the effects of this invasion on a native bivalve, Elliptio cornplanata, and on seston concentration in the stream.
• 2 Corbicula fluminea has not yet colonized the entire stream and its distribution limit is coincident with the occurrence of gravel beds.
• 3 Corbicula fluminea appears to cause localized reduction of seston concentration and may rapidly clear the sediment boundary layer of food. There was no evidence of a negative impact on the distribution of the native bivalve in spite of high measured rates of water clearance by C. fluminea.

     

Testing the host‐finding ability of a monophagous caterpillar in the field

1. Relatively few studies of the host‐finding ability of specialised, phytophagous insects involve direct observations of individual insects moving among intact hosts and non‐hosts. Information from such studies can inform the design of restoration programmes for species of conservation concern. 2. The movement of caterpillars of the threatened Oregon silverspot butterfly, Speyeria zerene hippolyta (Edwards) (Lepidoptera: Nymphalidae) was studied in the field in cleared arenas with 10 cm radii. Caterpillars were placed in the centre, surrounded by three individuals of their host, Viola adunca, and three different non‐host individuals, separated by bare ground. In a second experiment, second instars were placed between a host and a non‐host, 3–6 cm away. Caterpillars were observed to determine if they walked to their host more often than expected by chance. 3. Caterpillars walked to vegetation significantly more often than expected by chance. They did not, however, reach their hosts more often than expected, based on plant availability. 4. It is concluded that S. z. hippolyta caterpillars can distinguish vegetation from bare ground from 10 cm away. There is no evidence that they can distinguish their host plant from other herbaceous species at distances of 3 cm.     

The Politics of Egalitarianism: Theory and Practice

The Politics of Egalitarianism: Theory and Practice . Jacqueline Solway, ed. New York: Berghahn, 2006. 260 pp.