Testing for complementarity in phosphorus resource use by mixtures of crop species

Plant and Soil - The phosphorus (P) resource partitioning hypothesis assumes that dissimilarity in P acquisition traits among plant species leads to enhanced P uptake by crop combinations compared...     

Emission of CO2 from biochar‐amended soils and implications for soil organic carbon

Soil amendment with pyrogenic organic matter (PyOM), also named biochar, is claimed to sequester carbon (C). However, possible interactions between PyOM and native soil organic carbon (SOC) may accelerate the loss of SOC, thus reducing PyOM's C sequestration potential. We combined the results of 46 studies in a meta‐analysis to investigate changes in CO₂ emission of PyOM‐amended soils and to identify the causes of these changes and the possible factors involved. Our results showed a statistically significant increase of 28% in CO₂ emission from PyOM‐amended soils. When grouped by PyOM C (PyC):SOC ratios, the group of studies with a ratio >2 showed a significant increase in CO₂ emissions, but those with a ratio <2 showed no significant effect of PyOM application on CO₂ emission. Our data are consistent with the hypothesis that increased CO₂ emission after PyOM addition is additive and mainly derived from PyOM's labile C fractions. The PyC:SOC ratio provided the best predictor of increases in CO₂ production after PyOM addition to soil. This meta‐analysis highlights the importance of taking into account the amount of applied PyC in relation to SOC for designing future decomposition experiments.     

The ultrastructure of pinealocytes in the golden mole (Amblysomus hottentotus) with special reference to the granular vesicles

Summary The ultrastructure of the pinealocytes of the golden mole (Amblysomus hottentotus), a blind subterranean mammal living in complete darkness, was examined and compared with that of pinealocytes of other mammals. On the basis of the presence of granular vesicles and glycogen granules, only one population of pinealocytes was found. Large mitochondria, ribosomes, lipid inclusions and scarce lysosomes were observed in the perikaryon. Numerous glycogen granules, often forming typical accumulations, were frequently found to be associated with typical vacuoles. An extraordinary large number of granular vesicles is characteristic of the golden mole pinealocyte. Phenomena of excretion of compound(s) stored in the granular vesicles were identified. Morphologically this is characterized by dissociation of its granular core in situ while its limiting membrane is preserved. The physiological significance of the secretory process characterized by the formation of these granular vesicles is discussed.A portion of these observations were presented at the International Symposium on the Pineal Gland, Jerusalem, Israel, November 14–17, 1977     

Striga seed-germination activity of root exudates and compounds present in stems of Striga host and nonhost (trap crop) plants is reduced due to root colonization by arbuscular mycorrhizal fungi

Root colonization by arbuscular mycorrhizal (AM) fungi reduces stimulation of seed germination of the plant parasite Striga (Orobanchaceae). This reduction can affect not only host plants for Striga, resulting in a lower parasite incidence, but also false hosts or trap crops, which induce suicidal Striga seed germination, thereby diminishing their effectiveness. In order to better understand these AM-induced effects, we tested the influence of root colonization by different AM fungi on the seed-germination activity of root exudates of the Striga hermonthica nonhost plants cowpea and cotton on S. hermonthica. We also tested the effect of AM fungi on the seed-germination activity of the Striga gesnerioides host plant cowpea on S. gesnerioides. Moreover, we studied whether mycorrhization affects the transport of seed-germination activity to above-ground plant parts. Mycorrhization not only resulted in a lower seed germination of S. gesnerioides in the presence of root exudates of the S. gesnerioides host cowpea but also seed germination of S. hermonthica was also lower in the presence of root exudates of the S. hermonthica nonhosts cowpea and cotton. Downregulation of the Striga seed-germination activity occurs not only in root exudates upon root colonization by different AM fungi but also in the compounds produced by stems. The lowered seed-germination activity does not appear to depend on the presence of seed germination inhibitors in the root exudates of mycorrhizal plants. The implication for Striga control in the field is discussed.     

Linking plants to rocks: ectomycorrhizal fungi mobilize nutrients from minerals

Plant nutrients, with the exception of nitrogen, are ultimately derived from weathering of primary minerals. Traditional theories about the role of ectomycorrhizal fungi in plant nutrition have emphasized quantitative effects on uptake and transport of dissolved nutrients. Qualitative effects of the symbiosis on the ability of plants to access organic nitrogen and phosphorus sources have also become increasingly apparent. Recent research suggests that ectomycorrhizal fungi mobilize other essential plant nutrients directly from minerals through excretion of organic acids. This enables ectomycorrhizal plants to utilize essential nutrients from insoluble mineral sources and affects nutrient cycling in forest systems.     

Molecular identification of ectomycorrhizal mycelium in soil horizons

Molecular identification techniques based on total DNA extraction provide a unique tool for identification of mycelium in soil. Using molecular identification techniques, the ectomycorrhizal (EM) fungal community under coniferous vegetation was analyzed. Soil samples were taken at different depths from four horizons of a podzol profile. A basidiomycete-specific primer pair (ITS1F-ITS4B) was used to amplify fungal internal transcribed spacer (ITS) sequences from total DNA extracts of the soil horizons. Amplified basidiomycete DNA was cloned and sequenced, and a selection of the obtained clones was analyzed phylogenetically. Based on sequence similarity, the fungal clone sequences were sorted into 25 different fungal groups, or operational taxonomic units (OTUs). Out of 25 basidiomycete OTUs, 7 OTUs showed high nucleotide homology (> or = 99%) with known EM fungal sequences and 16 were found exclusively in the mineral soil. The taxonomic positions of six OTUs remained unclear. OTU sequences were compared to sequences from morphotyped EM root tips collected from the same sites. Of the 25 OTUs, 10 OTUs had > or = 98% sequence similarity with these EM root tip sequences. The present study demonstrates the use of molecular techniques to identify EM hyphae in various soil types. This approach differs from the conventional method of EM root tip identification and provides a novel approach to examine EM fungal communities in soil.     

High-level functional expression of a fungal xylose isomerase: the key to efficient ethanolic fermentation of xylose by Saccharomyces cerevisiae?

Evidence is presented that xylose metabolism in the anaerobic cellulolytic fungus Piromyces sp. E2 proceeds via a xylose isomerase rather than via the xylose reductase/xylitol-dehydrogenase pathway found in xylose-metabolising yeasts. The XylA gene encoding the Piromyces xylose isomerase was functionally expressed in Saccharomyces cerevisiae. Heterologous isomerase activities in cell extracts, assayed at 30 degrees C, were 0.3-1.1 micromol min(-1) (mg protein)(-1), with a Km for xylose of 20 mM. The engineered S. cerevisiae strain grew very slowly on xylose. It co-consumed xylose in aerobic and anaerobic glucose-limited chemostat cultures at rates of 0.33 and 0.73 mmol (g biomass)(-1) h(-1), respectively.     

Isolation and characterization of cDNA clones corresponding with mRNAs that accumulate during auxin-induced lateral root formation

Lateral root formation in root cultures of Arabidopsis thaliana can be initiated by exogenous addition of auxin. In order to find cDNA clones of which the corresponding mRNAs accumulate during this process, a cDNA library was constructed from root cultures treated with the active auxin 1-naphthaleneacetic acid (1- NAA). Differential screening of this library with cDNA probes derived from mRNA populations isolated from root cultures treated with 1-NAA and the inactive analogue 2-naphthaleneacetic acid (2-NAA) led to the isolation of four cDNA clones, designated AIR1, AIR3, AIR9 and AIR12. Accumulation of the mRNAs starts between 4 and 8 h and continues till at least 24 h after addition of an active auxin. Sequence analysis revealed that AIR1 encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine- rich N-terminus and a hydrophobic, possibly membrane spanning C- terminus. The putative function of these proteins is coupling of the cell wall to the plasma membrane. Surprisingly, AIR1 lacks the proline-rich or glycine-rich N-terminus which is thought to be important for interaction with the cell wall. AIR3 encodes a subtilisin-like serine protease which is believed to be active outside the plant cell. Although AIR9 and AIR12 do not show any significant homology to sequences in the database, they are also predicted to function outside the cell. Our screening thus indicates that a variety of genes encoding extracellular proteins are activated during auxin-induced lateral root formation.     

Restoration of Aboveground Ectomycorrhizal Flora in Stands of Pinus sylvestris (Scots Pine) in The Netherlands by Removal of Litter and Humus

Species richness and sporocarp density of ectomycorrhizal fungi in stands of Pinus sylvestris (Scots pine) in The Netherlands have decreased during the last decades. The lowest species diversity was found in P. sylvestris stands situated in areas with high atmospheric deposition of nitrogen originating from intensive livestock industry. In these stands, litter and humus have accumulated into thick layers, and the herbaceous understory vegetation is dominated by the grass Deschampsia flexuosa (wavy hair grass). Earlier investigations showed negative correlations between the number of species of ectomycorrhizal fungi above ground and the depth of humus layers. Our aim was to investigate whether removal of litter, humus layers, and herbaceous vegetation (sods)—so-called "sod cutting"—increased species diversity above ground and sporocarp density of ectomycorrhizal fungi in P. sylvestris stands of different age. Therefore, three P. sylvestris stands of different ages (planted in 1987, 1963, and 1924) on Haplic Arenosol were selected. In 1990, litter, humus layers, and herbaceous vegetation were removed to create nutrient-poor sandy soils without overlying litter and humus layers. Untreated plots served as controls. Surveys conducted in 1991, 1992, and 1993 indicated that sod cutting enhanced the species diversity and sporocarp density of ectomycorrhizal fungi. These results suggest that sod cutting is a way to restore ectomycorrhizal flora in medium-aged and old stands of P. sylvestris where litter and humus have accumulated.