Formation of the receptor system in the hind limb of the locust embryo

Summary The formation of the peripheral nervous system in the metathoracic limb bud of a locust embryo was studied by antibody [anti-(horseradish peroxidase); (anti-HRP)] labelling. At 50% of embryogenesis, the major neural routes from the periphery to the CNS are established. There are two waves of receptor cell genesis, (a) At about 35%, the first precursors of internal receptors emerge from the epidermal cell layer and at about 58% apparently all internal receptors are formed. At this stage, the number and arrangement coincide with those of the first larval instar, (b) At the 55% stage, anti-HRP-immunoreactive cells appear, which can be associated with exteroceptors (hairs, campaniform sensilla); these reach their final number and cellular constitution at 65%–70% embryogenesis. The two waves are correlated to the formation of the first and second embryonic cuticle. The results thus indicate that the genesis of the receptor system and its connections to the CNS is completed at about 2/3 of embryonic development.     

Development of a transient large strain contact method for biological heart valve simulations

A new 2D method to implement transient contact using Comsol Multiphysics (finite element analysis software that enables multiphysics simulations) is described, which is based on Hertzian contact. This method is compared to the existing (default) contact method that does not enable real transient simulations, but instead performs steady-state solutions where time is a constant. The two types of contact modelling have been applied to simple 2D biological heart valve models, undergoing strains in the region of 10% under 20 kPa pressure (applied over 0.3 s). Both the methods predicted comparable stress patterns, locations of peak stresses, deformations and directions of principal stress. The default contact method predicted slightly greater contact stresses, but spreads over a shorter surface length than the new contact method. The default contact method is useful for contact systems with little transient dependency, due to ease of use. However, where transient conditions are important the new contact method is preferred.     

Wavelet-based Gaussian-mixture hidden Markov model for the detection of multistage seizure dynamics: A proof-of-concept study

Background  

Epilepsy is a common neurological disorder characterized by recurrent electrophysiological activities, known as seizures. Without the appropriate detection strategies, these seizure episodes can dramatically affect the quality of life for those afflicted. The rationale of this study is to develop an unsupervised algorithm for the detection of seizure states so that it may be implemented along with potential intervention strategies.     

Identification of genes required for de novo DNA methylation in Arabidopsis

De novo DNA methylation in Arabidopsis thaliana is catalyzed by the methyltransferase DRM2, a homolog of the mammalian de novo methyltransferase DNMT3. DRM2 is targeted to DNA by small interfering RNAs (siRNAs) in a process known as RNA-directed DNA Methylation (RdDM). While several components of the RdDM pathway are known, a functional understanding of the underlying mechanism is far from complete. We employed both forward and reverse genetic approaches to identify factors involved in de novo methylation. We utilized the FWA transgene, which is methylated and silenced when transformed into wild-type plants, but unmethylated and expressed when transformed into de novo methylation mutants. Expression of FWA is marked by a late-flowering phenotype, which is easily scored in mutant versus wild-type plants. By reverse genetics we discovered the requirement for known RdDM effectors AGO6 and NRPE5a for efficient de novo methylation. A forward genetic approach uncovered alleles of several components of the RdDM pathway, including alleles of clsy1, ktf1 and nrpd/e2, which have not been previously shown to be required for the initial establishment of DNA methylation. Mutations were mapped and genes cloned by both traditional and whole genome sequencing approaches. The methodologies and the mutant alleles discovered will be instrumental in further studies of de novo DNA methylation.Key words: DNA methylation, Arabidopsis, de novo, genetic screen, whole-genome sequencing     

Estimating daytime ecosystem respiration from eddy-flux data

To understand what governs the patterns of net ecosystem exchange of CO₂, an understanding of factors influencing the component fluxes, ecosystem respiration and gross primary production is needed. In the present paper, we introduce an alternative method for estimating daytime ecosystem respiration based on whole ecosystem fluxes from a linear regression of photosynthetic photon flux density data vs. daytime net ecosystem exchange data at forest ecosystem level. This method is based on the principles of the Kok-method applied at leaf level for estimating daytime respiration. We demonstrate the method with field data and provide a discussion of the limitations of the method.     

Optimization of HIV-1 infectivity assays

HIV-1 reporter cell lines are the backbone of diagnostic assays, vaccine and drug development efforts. Performing HIV-1 infection experiments in a T cell background is desirable for many reasons. However, a low susceptibility to infection with primary patient isolates in available reporter T cell lines has limited such efforts. We here demonstrate that optimization of HIV-1 receptor expression and the utilization of serum free medium compositions can increase susceptibility of reporter T cell lines to HIV-1 infection by up to two orders of magnitude.     

A benefit-finding intervention for family caregivers of persons with Alzheimer disease: study protocol of a randomized controlled trial

Background

Patients with ST-elevation myocardial infarction (STEMI) not treated with primary or rescue percutaneous coronary intervention (PCI) are at risk for recurrent ischemia, especially when viability in the infarct-area is present. Therefore, an invasive strategy with PCI of the infarct-related coronary artery in patients with viability would reduce the occurrence of a composite end point of death, reinfarction, or unstable angina (UA).

Methods

Patients admitted with an (sub)acute myocardial infarction, who were not treated by primary or rescue PCI, and who were stable during the first 48 hours after the acute event, were screened for the study. Eventually, we randomly assigned 216 patients with viability (demonstrated with low-dose dobutamine echocardiography) to an invasive or a conservative strategy. In the invasive strategy stenting of the infarct-related coronary artery was intended with abciximab as adjunct treatment. Seventy-five (75) patients without viability served as registry group. The primary endpoint was the composite of death from any cause, recurrent myocardial infarction (MI) and unstable angina at one year. As secondary endpoint the need for (repeat) revascularization procedures and anginal status were recorded.

Results

The primary combined endpoint of death, recurrent MI and unstable angina was 7.5% (8/106) in the invasive group and 17.3% (19/110) in the conservative group (Hazard ratio 0.42; 95% confidence interval [CI] 0.18-0.96; p = 0.032). During follow up revascularization-procedures were performed in 6.6% (7/106) in the invasive group and 31.8% (35/110) in the conservative group (Hazard ratio 0.18; 95% CI 0.13-0.43; p < 0.0001). A low rate of recurrent ischemia was found in the non-viable group (5.4%) in comparison to the viable-conservative group (14.5%). (Hazard-ratio 0.35; 95% CI 0.17-1.00; p = 0.051).

Conclusion

We demonstrated that after acute MI (treated with thrombolysis or without reperfusion therapy) patients with viability in the infarct-area benefit from a strategy of early in-hospital stenting of the infarct-related coronary artery. This treatment results in a long-term uneventful clinical course. The study confirmed the low risk of recurrent ischemia in patients without viability.

Trial registration

ClinicalTrials.gov: NCT00149591.     

Spatial heterogeneity of ecosystem carbon fluxes in a broadleaved forest in Northern Germany

Carbon fluxes were investigated in a mature deciduous forest, located in Northern Germany (53°47′N–10°36′E), by means of eddy‐covariance technique, stand survey and models. This forest has been managed following a concept of nature‐oriented forestry since the 1980s. One of the goals of the study was to test whether changed management led to increased carbon sequestration. The forest contains several broadleaved tree species. Depending on wind direction, the fetch‐area of the eddy‐covariance data was dominated by different tree species. Three subplots dominated by Oak, Beech or Alder/Ash could be distinguished from the tower data. In each of these subplots, 30 × 30 m² areas were defined to analyse leaf area index, litterfall and the increase of the wood biomass. Eddy‐covariance analysis showed that the gross primary productivity (GPP′) was higher in the Oak subplot (?1794 g C m^?2 yr^?1) in comparison with the Beech plot and the Alder/Ash plot (?1470 and ?1595 g C m^?2 yr^?1, respectively). The total ecosystem respiration (TER) was the highest in the Alder/Ash‐dominated subplot (1401 g C m^?2 yr^?1) followed by the Oak plot and the Beech plot (1235 and 1174 g C m^?2 yr^?1, respectively). The resulting net ecosystem productivity (NEP) was ?559 g C m^?2 yr^?1 for the Oak‐dominated subplot, ?295 g C m^?2 yr^?1 for the Beech plot and ?193 g C m^?2 yr^?1 for the Alder/Ash plot. From Stand survey and modelling, the net primary productivity was estimated as 1103, 702 and 671 g C m^?2 yr^?1 in the Oak, Beech and Alder/Ash plot, respectively. Also carbon flux with litterfall was the highest in the Oak plot 343 g C m^?2 yr^?1 and lowest in Alder/Ash plot (197 g m^?2 yr^?1) with the Beech plot in between (228 g m^?2 yr^?1). The observations indicate an increase of the proportion of litterfall with increasing GPP′ and a different ability of carbon sequestration of the three stands in medium temporary scale. Only in the Oak stand that comprised the oldest trees and the most structured canopy the carbon sequestration was increased compared with conventionally managed forests.