Noncytolytic inhibition of X4 virus by bulk CD8(+) cells from human immunodeficiency virus type 1 (HIV-1)-infected persons and HIV-1-specific cytotoxic T lymphocytes is not mediated by beta-chemokines

Human immunodeficiency virus (HIV)-specific cytotoxic T lymphocytes (CTL) mediate immunologic selection pressure by both cytolytic and noncytolytic mechanisms. Non cytolytic mechanisms include the release of beta-chemokines blocking entry of R5 HIV-1 strains. In addition, CD8(+) cells inhibit X4 virus isolates via release of as yet poorly characterized soluble factors. To further characterize these factors, we performed detailed analysis of CTL as well as bulk CD8(+) T lymphocytes from six HIV-1-infected individuals and from six HIV-1-seronegative individuals. Kinetic studies revealed that secreted suppressive activities of HIV-1-specific CTL and bulk CD8(+) T lymphocytes from all HIV-1-infected persons are significantly higher than that of supernatants from seronegative controls. The suppressive activity could be blocked by monensin and brefeldin A, was heat labile, and appeared in a pattern different from that of secretion of chemokines (MDC, I-309, MIP-1alpha, MIP-1beta, and RANTES), cytokines (gamma interferon, tumor necrosis factor alpha, and granulocyte-macrophage colony-stimulating factor), and interleukins (interleukin-13 and interleukin-16). This suppression activity was characterized by molecular size exclusion centrifugation and involves a suppressive activity of >50 kDa which could be bound to heparin and a nonbinding inhibitory activity of <50 kDa. Our data provide a functional link between CD8(+) cells and CTL in the noncytolytic inhibition of HIV-1 and suggest that suppression of X4 virus is mediated through proteins. The sizes of the proteins, their affinity for heparin, and the pattern of release indicate that these molecules are not chemokines.     

HIV-1 antiviral activity of recombinant natural killer cell enhancing factors,NKEF-A and NKEF-B,members of the peroxiredoxin family

CD8(+) T-cells are a major source for the production of non-cytolytic factors that inhibit HIV-1 replication. In order to characterize further these factors, we analyzed gene expression profiles of activated CD8(+) T-cells using a human cDNA expression array containing 588 human cDNAs. mRNA for the chemokine I-309 (CCL1), the cytokines granulocyte-macrophage colony-stimulating factor and interleukin-13, and natural killer cell enhancing factors (NKEF) -A and -B were up-regulated in bulk CD8(+) T-cells from HIV-1 seropositive individuals compared with seronegative individuals. Recombinant NKEF-A and NKEF-B inhibited HIV-1 replication when exogenously added to acutely infected T-cells at an ID(50) (dose inhibiting HIV-1 replication by 50%) of approximately 130 nm (3 microg/ml). Additionally, inhibition against dual-tropic simian immunodeficiency virus and dual-tropic simian-human immunodeficiency virus was found. T-cells transfected with NKEF-A or NKEF-B cDNA were able to inhibit 80-98% HIV-1 replication in vitro. Elevated plasma levels of both NKEF-A and NKEF-B proteins were detected in 23% of HIV-infected non-treated individuals but not in persons treated with highly active antiviral therapy or uninfected persons. These results indicate that the peroxiredoxin family members NKEF-A and NKEF-B are up-regulated in activated CD8(+) T-cells in HIV infection, and suggest that these antioxidant proteins contribute to the antiviral activity of CD8(+) T-cells.     

Isolation and characterization of microsatellites in Neogobius kessleri (Perciformes,Gobiidae) and cross‐species amplification within the family Gobiidae

Fourteen polymorphic microsatellites were isolated from Neogobius kessleri, a benthic fish of Ponto‐Caspian origin which has been recently introduced into the Middle and Upper Danube River. Number of alleles and heterozygosity per locus in a sample of 32 fish individuals ranged from two to four and from 0.13 to 0.75, respectively. These primers will be useful in determining the population structure of N. kessleri. In addition, successful cross‐amplification was obtained for four related species, N. melanostomus, N. fluviatilis, N. gymnotrachelus and Proterorhinus marmoratus. These microsatellite loci may be useful for the evaluation of the origin of non‐native goby populations.     

A mRNA landscape of bovine embryos after standard and MAPK-inhibited culture conditions: a comparative analysis

Background

Genes and signalling pathways involved in pluripotency have been studied extensively in mouse and human pre-implantation embryos and embryonic stem (ES) cells. The unsuccessful attempts to generate ES cell lines from other species including cattle suggests that other genes and pathways are involved in maintaining pluripotency in these species. To investigate which genes are involved in bovine pluripotency, expression profiles were generated from morula, blastocyst, trophectoderm and inner cell mass (ICM) samples using microarray analysis. As MAPK inhibition can increase the NANOG/GATA6 ratio in the inner cell mass, additionally blastocysts were cultured in the presence of a MAPK inhibitor and changes in gene expression in the inner cell mass were analysed.

Results

Between morula and blastocyst 3,774 genes were differentially expressed and the largest differences were found in blastocyst up-regulated genes. Gene ontology (GO) analysis shows lipid metabolic process as the term most enriched with genes expressed at higher levels in blastocysts. Genes with higher expression levels in morulae were enriched in the RNA processing GO term. Of the 497 differentially expressed genes comparing ICM and TE, the expression of NANOG, SOX2 and POU5F1 was increased in the ICM confirming their evolutionary preserved role in pluripotency. Several genes implicated to be involved in differentiation or fate determination were also expressed at higher levels in the ICM. Genes expressed at higher levels in the ICM were enriched in the RNA splicing and regulation of gene expression GO term. Although NANOG expression was elevated upon MAPK inhibition, SOX2 and POU5F1 expression showed little increase. Expression of other genes in the MAPK pathway including DUSP4 and SPRY4, or influenced by MAPK inhibition such as IFNT, was down-regulated.

Conclusion

The data obtained from the microarray studies provide further insight in gene expression during bovine embryonic development. They show an expression profile in pluripotent cells that indicates a pluripotent, epiblast-like state. The inability to culture ICM cells as stem cells in the presence of an inhibitor of MAPK activity together with the reported data indicates that MAPK inhibition alone is not sufficient to maintain a pluripotent character in bovine cells.

Electronic supplementary material

The online version of this article (doi:10.1186/s12864-015-1448-x) contains supplementary material, which is available to authorized users.     

基于红外相机技术分析鼬獾的活动节律

鼬獾(Melogale moschata)是食肉目鼬科鼬獾属动物,在我国分布广泛、种群数量丰富,但有关鼬獾的生态研究报导比较少.为掌握鼬獾的活动节律及其影响因素,2017年2月至2019年2月,利用红外相机技术对江西省桃红岭梅花鹿国家级自然保护区、九岭山国家级自然保护区和齐云山国家级自然保护区的鼬獾进行了监测,每个保护...     

祁连山大野口流域青海云杉种群数量动态

种群数量动态揭示了种群的结构特征及其潜在的驱动机制，有助于预测种群未来的动态，进而为森林生态系统的保护与恢复提供理论依据。本研究基于10.2 hm²青海云杉动态监测样地数据，以种群径级结构代替年龄结构，编制静态生命表，绘制径级结构图、存活曲线、死亡率曲线、消失率曲线和4个生存分析函数曲线，分析青海云杉种群数量特征，并利用种群数量动态变化指数和时间序列模型对种群数量动态进行预测。结果表明：（1）青海云杉种群的年龄结构近似于倒"J"型，幼苗和小树储量丰富；（2）种群存活曲线趋近于Deevey-Ⅱ型，为稳定型种群，死亡率曲线和消失率曲线变化趋势基本一致，均在第2、8龄级出现高峰期；（3）生存率曲线呈下降趋势，累计死亡率曲线呈上升趋势，死亡密度曲线缓慢下降，而危险率曲线逐渐上升，该种群具有：前期减少、中期稳定、后期衰退的生长特点；（4）种群数量变化动态指数V_pi>0，表明该种群属于增长型种群，V_pi''>0且趋近于0，则表明该种群趋近于稳定型；（5）时间序列预测分析表明，在未来2、4、6、8个龄级时间后，种群呈稳定增长趋势。研究显示，祁连山大野口流域青海云杉种群为稳定增长型种群，只要未来不遭受强烈干扰，种群数量会保持逐渐增长。针对该种群幼龄个体在前期的更新过程死亡率较高情况，建议在今后的经营管理中应重点加强对第1、2龄级植株生存环境的保护和改善，提高幼苗和小树的存活率。     

电子供体及受体对棕色固氮菌抗氨阻遏能力的影响

电子供体连二亚硫酸钠,甲基紫精及电子受体亚甲蓝均能强烈的抑制棕色固氮菌表达固氮活性,并引起该菌的抗氨阻遏能力减弱,适当提高氧压,能提高菌体的固氮活性近15％,但过高的氧分压反而抑制菌体的固氮活性,此外,提高氢分压能降低棕色固氮菌菌体内的还原电位,从而达到提高菌体抗氨阻遏能力的效果。     

Analysis of Amblyomma sculptum haplotypes in an area endemic for Brazilian spotted fever

Amblyomma sculptum (Ixodida: Ixodidae) Berlese, 1888, a member of the Amblyomma cajennense complex, is the major vector of Brazilian spotted fever (BSF) in southeastern Brazil. In this study, the genetic diversity of A. sculptum populations in the state of Rio de Janeiro (RJ), Brazil, was investigated because genetic variability in tick populations may be related to vector competence. Samples of A. sculptum from 19 municipalities in 7 regions of RJ were subjected to DNA extraction, amplification and sequencing of D‐loop, cytochrome oxidase II and 12S rDNA mitochondrial genes. These sequences were used to map the genetic diversity of this tick. Amblyomma sculptum populations are genetically diverse in RJ, especially in the South Centre and Highland regions. Few unique haplotypes were observed in all populations, and the majority of genetic variation found was among ticks within each population. Phylogenetic reconstruction reinforced the assumption that all the haplotypes identified in RJ belong to A. sculptum. However, some RJ haplotypes are closer to A. sculptum from Argentina than to A. sculptum from elsewhere in Brazil. In RJ, A. sculptum has high genetic diversity, although little genetic differentiation. Observations also indicated a high level of gene flow among the studied populations and no evidence of population structure according to region in RJ.     

Short dry spells in the wet season increase mortality of tropical pioneer seedlings

Variation in plant species performance in response to water availability offers a potential axis for temporal and spatial habitat partitioning and may therefore affect community composition in tropical forests. We hypothesized that short dry spells during the wet season are a significant source of mortality for the newly emerging seedlings of pioneer species that recruit in treefall gaps in tropical forests. An analysis of a 49-year rainfall record for three forests across a rainfall gradient in central Panama confirmed that dry spells of ≥10 days during the wet season occur on average once a year in a deciduous forest, and once every other year in a semi-deciduous moist and an evergreen wet forest. The effect of wet season dry spells on the recruitment of pioneers was investigated by comparing seedling survival in rain-protected dry plots and irrigated control plots in four large artificially created treefall gaps in a semi-deciduous tropical forest. In rain-protected plots surface soil layers dried rapidly, leading to a strong gradient in water potential within the upper 10 cm of soil. Seedling survival for six pioneer species was significantly lower in rain-protected than in irrigated control plots after only 4 days. The strength of the irrigation effect differed among species, and first became apparent 3–10 days after treatments started. Root allocation patterns were significantly, or marginally significantly, different between species and between two groups of larger and smaller seeded species. However, they were not correlated with seedling drought sensitivity, suggesting allocation is not a key trait for drought sensitivity in pioneer seedlings. Our data provide strong evidence that short dry spells in the wet season differentially affect seedling survivorship of pioneer species, and may therefore have important implications to seedling demography and community dynamics.     

The effects of plant quality on caterpillar growth and defense against natural enemies

A survey of 85 species of Lepidoptera feeding on 40 hosts on Barro Colorado Island, Panama showed that growth and defensive traits of caterpillars were correlated with the nutritional and defensive traits of their hosts. Growth rates were faster on young than mature leaves, reflecting the higher nitrogen and water content of the former. Growth was also positively correlated with leaf expansion rate, partially because of higher nitrogen and water contents of fast-expanding young leaves. Specialists grew faster than generalists, but both responded positively to nutritional quality. There was no effect of lepidopteran family on growth. In analyses where the effects of nitrogen and water were removed, the residuals for growth rate were greater for young than for mature leaves and were positively correlated with expansion rates of young leaves. This suggests that traits other than nutrition were also important. As young, expanding leaves cannot use toughness as a defense, one possible explanation for the differences in growth is differences in chemical defenses. Growth rate residuals for both specialists and generalists were higher for the more poorly defended fast-expanders, but the effect was greatest for generalists, perhaps because generalists were more sensitive to secondary metabolites. We predicted that slow growth for caterpillars would increase their risk to natural enemies and would select for higher defenses. Generalists had more defensive traits than specialists and were less preferred in feeding trials with ants. Similarly, species feeding on mature leaves were the most defended and those feeding on fast-expanding young leaves were the least defended and most preferred by ants. Thus the effects of plant secondary metabolites and nutrients dictate herbivore growth rates, which in turn influence their susceptibility to the third trophic level and the importance of defenses.