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101.
Kaja S. Borge Silje Nord Peter Van Loo Ole C. Lingj?rde Gjermund Gunnes Grethe I. G. Aln?s Hiroko K. Solvang Torben Lüders Vessela N. Kristensen Anne-Lise B?rresen-Dale Frode Lingaas 《PloS one》2015,10(5)
BackgroundCopy number aberrations frequently occur during the development of many cancers. Such events affect dosage of involved genes and may cause further genomic instability and progression of cancer. In this survey, canine SNP microarrays were used to study 117 canine mammary tumours from 69 dogs.ResultsWe found a high occurrence of copy number aberrations in canine mammary tumours, losses being more frequent than gains. Increased frequency of aberrations and loss of heterozygosity were positively correlated with increased malignancy in terms of histopathological diagnosis. One of the most highly recurrently amplified regions harbored the MYC gene. PTEN was located to a frequently lost region and also homozygously deleted in five tumours. Thus, deregulation of these genes due to copy number aberrations appears to be an important event in canine mammary tumour development. Other potential contributors to canine mammary tumour pathogenesis are COL9A3, INPP5A, CYP2E1 and RB1. The present study also shows that a more detailed analysis of chromosomal aberrations associated with histopathological parameters may aid in identifying specific genes associated with canine mammary tumour progression.ConclusionsThe high frequency of copy number aberrations is a prominent feature of canine mammary tumours as seen in other canine and human cancers. Our findings share several features with corresponding studies in human breast tumours and strengthen the dog as a suitable model organism for this disease. 相似文献
102.
Uri Gophna David M Kristensen Yuri I Wolf Ovidiu Popa Christine Drevet Eugene V Koonin 《The ISME journal》2015,9(9):2021-2027
The CRISPR (clustered, regularly, interspaced, short, palindromic repeats)–Cas (CRISPR-associated genes) systems of archaea and bacteria provide adaptive immunity against viruses and other selfish elements and are believed to curtail horizontal gene transfer (HGT). Limiting acquisition of new genetic material could be one of the sources of the fitness cost of CRISPR–Cas maintenance and one of the causes of the patchy distribution of CRISPR–Cas among bacteria, and across environments. We sought to test the hypothesis that the activity of CRISPR–Cas in microbes is negatively correlated with the extent of recent HGT. Using three independent measures of HGT, we found no significant dependence between the length of CRISPR arrays, which reflects the activity of the immune system, and the estimated number of recent HGT events. In contrast, we observed a significant negative dependence between the estimated extent of HGT and growth temperature of microbes, which could be explained by the lower genetic diversity in hotter environments. We hypothesize that the relevant events in the evolution of resistance to mobile elements and proclivity for HGT, to which CRISPR–Cas systems seem to substantially contribute, occur on the population scale rather than on the timescale of species evolution. 相似文献
103.
Cationic membrane-active peptides have been studied for years in the hope of developing them into novel types of therapeutics. In this article, we investigate an effect that might have significant experimental implications for investigators who wish to study these peptides, namely, that the peptides adsorb to solid surfaces of glass and plastic. Specifically, we use analytical HPLC to systematically quantify the adsorption of the three cationic membrane-active peptides mastoparan X, melittin, and magainin 2 to the walls of commonly used glass and plastic sample containers. Our results show that, at typical experimental peptide concentrations, 90% or more of the peptides might be lost from solution due to rapid adsorption to the walls of the sample containers. Thus, our results emphasize that investigators should always keep these adsorption effects in mind when designing and interpreting experiments on cationic membrane-active peptides. We conclude the article by discussing different strategies for reducing the experimental impact of these adsorption effects. 相似文献
104.
The stress hormone corticosterone in a marine top predator reflects short‐term changes in food availability 下载免费PDF全文
Robert T. Barrett Kjell E. Erikstad Hanno Sandvik Mari Myksvoll Susi Jenni‐Eiermann Ditte L. Kristensen Truls Moum Tone K. Reiertsen Frode Vikebø 《Ecology and evolution》2015,5(6):1306-1317
In many seabird studies, single annual proxies of prey abundance have been used to explain variability in breeding performance, but much more important is probably the timing of prey availability relative to the breeding season when energy demand is at a maximum. Until now, intraseasonal variation in prey availability has been difficult to quantify in seabirds. Using a state‐of‐the‐art ocean drift model of larval cod Gadus morhua, an important constituent of the diet of common guillemots Uria aalge in the southwestern Barents Sea, we were able to show clear, short‐term correlations between food availability and measurements of the stress hormone corticosterone (CORT) in parental guillemots over a 3‐year period (2009–2011). The model allowed the extraction of abundance and size of cod larvae with very high spatial (4 km) and temporal resolutions (1 day) and showed that cod larvae from adjacent northern spawning grounds in Norway were always available near the guillemot breeding colony while those from more distant southerly spawning grounds were less frequent, but larger. The latter arrived in waves whose magnitude and timing, and thus overlap with the guillemot breeding season, varied between years. CORT levels in adult guillemots were lower in birds caught after a week with high frequencies of southern cod larvae. This pattern was restricted to the two years (2009 and 2010) in which southern larvae arrived before the end of the guillemot breeding season. Any such pattern was masked in 2011 by already exceptionally high numbers of cod larvae in the region throughout chick‐rearing period. The findings suggest that CORT levels in breeding birds increase when the arrival of southern sizable larvae does not match the period of peak energy requirements during breeding. 相似文献
105.
A. C. Krüger M. K. Raarup M. M. Nielsen M. Kristensen F. Besenbacher J. Kjems V. Birkedal 《European biophysics journal : EBJ》2010,39(9):1343-1350
G-rich telomeric DNA sequences can form G-quadruplex structures. The heterogeneous nuclear ribonucleoprotein A1 (hnRNP A1)
and a shortened derivative (UP1) are active in telomere length regulation, and it has been reported that UP1 can unwind G-quadruplex
structures. Here, we investigate the interaction of hnRNP A1 with G-quadruplex DNA structures containing the human telomere
repeat (TTAGGG) by gel retardation assays, ensemble fluorescence energy transfer (FRET) spectroscopy, and single molecule
FRET microscopy. Our biochemical experiments show that hnRNP A1 binds well to the G-quadruplex telomeric DNA. Ensemble and
single molecule FRET measurements provide further insight into molecular conformation: the telomeric DNA overhang is found
to be in a folded state in the absence of hnRNP A1 and to remain predominantly in a compact state when complexed with hnRNP
A1. This finding is in contrast to the previously reported crystal structures of UP1-telomere DNA complexes where the DNA
oligo within the protein-DNA complex is in a fully open conformation. 相似文献
106.
Mette Kristensen Francesco Savorani Gitte Ravn-Haren Morten Poulsen Jaroslaw Markowski Flemming H. Larsen Lars O. Dragsted Søren B. Engelsen 《Metabolomics : Official journal of the Metabolomic Society》2010,6(1):129-136
Risk of cardiovascular disease is related to cholesterol distribution in different lipoprotein fractions. Lipoproteins in
rodent model studies can only reliably be measured by time- and plasma-consuming fractionation. An alternative method to measure
cholesterol distribution in the lipoprotein fractions in rat plasma is presented in this paper. Plasma from two rat studies
(n = 68) was used in determining the lipoprotein profile by an established ultracentrifugation method and proton nuclear magnetic
resonance (NMR) spectra of replicate samples was obtained. From the ultracentrifugation reference data and the NMR spectra,
an interval partial least-square (iPLS) regression model to predict the amount of cholesterol in the different lipoprotein
fractions was developed. The relative errors of the prediction models were between 12 and 33% and had correlation coefficients
(r) between 0.96 and 0.84. The models were tested with an independent test set giving prediction errors between 19 and 46%
and r between 0.96 and 0.76. Prediction of High, Low and Very Low Density Lipoprotein (HDL, LDL and VLDL) and total cholesterol
was conducted in a study where rats had been supplemented with two doses of air-dried apple-powder. No significant difference
in LDL, VLDL and total cholesterol was observed between the groups. The high apple-powder (20%) group had significantly lower
HDL cholesterol (11%, P = 0.0452) than the control group. It is concluded that the iPLS approach yielded excellent regression models and thus univocal
established chemometric analysis of NMR spectra of rat plasma as a strong and efficient way to quantify lipoprotein fractions
in rat studies. 相似文献
107.
Interactions between the root‐knot nematode Meloidogyne incognita and three isogenic tomato (Lycopersicon esculentum) genotypes were examined when plants were grown under ambient (370 ppm) and elevated (750 ppm) CO2. We tested the hypothesis that, defence‐recessive genotypes tend to allocate ‘extra’ carbon (relative to nitrogen) to growth under elevated CO2, whereas defence‐dominated genotypes allocate extra carbon to defence, and thereby increases the defence against nematodes. For all three genotypes, elevated CO2 increased height, biomass, and root and leaf total non‐structural carbohydrates (TNC):N ratio, and decreased amino acids and proteins in leaves. The activity of anti‐oxidant enzymes (superoxide dismutase and catalase) was enhanced by nematode infection in defence‐recessive genotypes. Furthermore, elevated CO2 and nematode infection did not qualitatively change the volatile organic compounds (VOC) emitted from plants. Elevated CO2 increased the VOC emission rate only for defence‐dominated genotypes that were not infected with nematodes. Elevated CO2 increased the number of nematode‐induced galls on defence‐dominated genotypes but not on wild‐types or defence‐recessive genotypes roots. Our results suggest that CO2 enrichment may not only increase plant C : N ratio but can disrupt the allocation of plant resources between growth and defence in some genetically modified plants and thereby reduce their resistance to nematodes. 相似文献
108.
RÉGIS FICHOT TÊTÈ S. BARIGAH SYLVAIN CHAMAILLARD DIDER LE THIEC FRANÇOISE LAURANS HERVÉ COCHARD FRANCK BRIGNOLAS 《Plant, cell & environment》2010,33(9):1553-1568
We examined the relationships between xylem resistance to cavitation and 16 structural and functional traits across eight unrelated Populus deltoides×Populus nigra genotypes grown under two contrasting water regimes. The xylem water potential inducing 50% loss of hydraulic conductance (Ψ50) varied from ?1.60 to ?2.40 MPa. Drought‐acclimated trees displayed a safer xylem, although the extent of the response was largely genotype dependant, with Ψ50 being decreased by as far as 0.60 MPa. At the tissue level, there was no clear relationship between xylem safety and either xylem water transport efficiency or xylem biomechanics; the only structural trait to be strongly associated with Ψ50 was the double vessel wall thickness, genotypes exhibiting a thicker double wall being more resistant. At the leaf level, increased cavitation resistance was associated with decreased stomatal conductance, while no relationship could be identified with traits associated with carbon uptake or bulk leaf carbon isotope discrimination, a surrogate of intrinsic water‐use efficiency. At the whole‐plant level, increased safety was associated with higher shoot growth potential under well‐irrigated regime only. We conclude that common trade‐offs between xylem resistance to cavitation and other physiological traits that are observed across species may not necessarily hold true at narrower scales. 相似文献
109.
JULES ANGST THOMAS D. MEYER ROLF ADOLFSSON PETER SKEPPAR MAURO CARTA FRANCO BENAZZI RU‐BAND LU YI‐HSUAN WU HAI‐CHEN YANG CHENG‐MEI YUAN PAOLO MORSELLI PETER BRIEGER JUDITH KATZMANN INES ALICE TEIXEIRA LEÃO JOSÉ ALBERTO DEL PORTO DORIS HUPFELD MORENO RICARDO A. MORENO ODEILTON T. SOARES EDUARD VIETA ALEX GAMMA 《World psychiatry》2010,9(1):41-49
This study examined the transcultural robustness of a screening instrument
for hypomania, the Hypomania Checklist-32, first revised version (HCL-32 R1).
It was carried out in 2606 patients from twelve countries in five geographic
regions (Northern, Southern and Eastern Europe, South America and East Asia).
In addition, GAMIAN Europe contributed data from its members. Exploratory
and confirmatory factor analyses were used to examine the transregional stability
of the measurement properties of the HCL-32 R1, including the influence of
sex and age as covariates. Across cultures, a two-factor structure was confirmed:
the first factor (F1) reflected the more positive aspects of hypomania (being
more active, elated, self-confident, and cogni-tively enhanced); the second
factor (F2) reflected the more negative aspects (being irritable, impulsive,
careless, more substance use). The measurement properties of the HCL-32 R1
were largely invariant across cultures. Only few items showed transcultural
differences in their relation to hypomania as measured by the test. F2 was
higher among men and in more severe manic syndromes; F1 was highest in North
and East Europe and lowest in South America. The scores decreased slightly
with age. The frequency of the 32 items showed remarkable similarities across
geographic areas, with two excep-tions: South Europeans had lower symptom
frequencies in general and East Europeans higher rates of substance use. These
findings support the interna-tional applicability of the HCL-32 R1 as a screening
instrument for hypomania. 相似文献
110.