Identification of the allelic state of the <Emphasis Type="Italic">Lr34</Emphasis> leaf rust resistance gene in soft winter wheat cultivars developed in Ukraine

The distribution of alleles at the Lr34 locus associated with leaf rust resistance has been studied in soft winter wheat (Triticum aestivum L.) cultivars developed in Ukraine. To determine the allelic state of the Lr34 locus, codominant molecular marker cssfr5 has been used. Cultivars with the revealed Lr34(+) and Lr34(−) alleles have been identified as potentially resistant or susceptible, respectively. A collection of 81 cultivars from the main breeding centers of Ukraine has been examined; the Lr34(+) allele has been revealed in 44% of the tested cultivars. The obtained results have been compared with general data on the leaf rust resistance of wheat cultivars from different countries.     

Genetic data on 15 STR loci in the Caucasian population of the Russian Federation

Population genetic data for the 15 STR loci included in the AmpFlSTR Identifier kit (D8S1179, D21S11, D7S820, CSF1PO, D3S1358, TH01, D13S317, D16S539, D2S1338, D19S433, VWA, TPOX, D18S51, D5S818 and FGA) obtained from 1118 unrelated Caucasian individuals from the Russian Federation are presented. In addition, a number of forensically useful genetic parameters are reported.     

Invasive crayfish and crayfish plague on the move: first detection of the plague agent Aphanomyces astaci in the Romanian Danube

Native European crayfish, such as Astacus leptodactylus, are threatened, among other factors, by the crayfish plague agent Aphanomyces astaci, dispersed by invasive North American crayfish. Two of these invaders, Pacifastacus leniusculus and Orconectes limosus, have extended their distribution in the River Danube catchment; the latter was detected for the first time in Romania in 2008. We monitored, at monthly intervals for over 2 yr, occurrence of native A. leptodactylus and invasive O. limosus at 6 sites on the Romanian Danube and checked for the invasive species in 4 of its tributaries. Between January 2009 and March 2011, the relative abundances of O. limosus steadily increased with time, while the native A. leptodactylus dramatically decreased in abundance. O. limosus expanded downstream at a rate of ca. 15 km yr-1; in August 2011, it was already present in the upper 105 km of the Romanian Danube. An agent-specific real-time PCR analyses demonstrated the presence of A. astaci DNA in at least 32% of the analysed invasive (n = 71) and 41% of the native (n = 49) crayfish coexisting in the Danube. Furthermore, A. astaci was also detected in A. leptodactylus captured about 70 km downstream of the O. limosus invasion front (at the time of sampling). Assuming a steady rate of expansion, O. limosus may invade the sensitive Danube delta area in the mid-2060s, even without long-distance dispersal. The crayfish plague agent, however, may reach the delta substantially earlier, through dispersal downstream among populations of native crayfish.     

A comprehensive sensitivity analysis of microarray breast cancer classification under feature variability

Background  

Large discrepancies in signature composition and outcome concordance have been observed between different microarray breast cancer expression profiling studies. This is often ascribed to differences in array platform as well as biological variability. We conjecture that other reasons for the observed discrepancies are the measurement error associated with each feature and the choice of preprocessing method. Microarray data are known to be subject to technical variation and the confidence intervals around individual point estimates of expression levels can be wide. Furthermore, the estimated expression values also vary depending on the selected preprocessing scheme. In microarray breast cancer classification studies, however, these two forms of feature variability are almost always ignored and hence their exact role is unclear.     

Molecular population genetics of the alcohol dehydrogenase locus in the Hawaiian drosophilid D. mimica

Sequence variation among 10 alleles of the alcohol dehydrogenase (Adh) gene of the Hawaiian drosophilid D. mimica was analyzed with reference to the evolutionary history of the Hawaiian subgroup as well as to levels and patterns of polymorphism of the Adh gene in continental drosophilid species. The Adh gene of D. mimica is less polymorphic than that of other drosophilid species, and no replacement substitutions were found. Statistical analyses of the Adh alleles suggested the action of balancing selection and revealed significant linkage disequilibrium among three of the variable sites. The effective population size was estimated to be only slightly smaller than that of continental species and, surprisingly, on the same order of magnitude as the actual size.      

A globally occurring indel polymorphism in the promoter of the IFNA2 gene is not associated with severity of malaria but with the positivity rate of HCV

Background

Glutathione S-transferases (GSTs) is a genetic factor for many diseases and exhibits great diversities among various populations. We assessed association of the genotypes of Glutathione S-transferases Omega-1 (GSTO1) A140D with ethnicity in China.

Results

Peripheral blood samples were obtained from 1314 individuals from 14 ethnic groups. Polymorphisms of GSTO1 A140D were measured using polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP). Logistic regression was employed to adjustment for regional factor. The frequency of GSTO1 140A allele was 15.49% in the total 14 ethnic populations. Compared to Han ethnic group, two ethnic populations were more likely to have AA or CA genotype [odds ratio (OR): 1.77, 95% confidence interval (95% CI): 1.05–2.98 for Uygur and OR: 1.78, 95% CI: 1.18–2.69 for Hui]. However, there were no statistically significant differences across 14 ethnic groups when region factor was adjusted. In Han ethnicity, region was significantly associated with AA or CA genotype. Han individuals who resided in North-west of China were more likely to have these genotypes than those in South of China (OR: 1.63, 95% CI: 1.21–2.20).

Conclusion

The prevalence of the GSTO1 140A varied significantly among different regional populations in China, which showed that geography played a more important role in the population differentiation for this allele than the ethnicity/race.     

Dependence of cross-pollination indices on genotype characteristics of winter common wheat

Out-crossing indices (the out-rcrossing rate, the frequency of plants with cross-pollination and outcrossing intensity) in F2 plants of winter common wheat from the reciprocal cross B-16 x Odesskaya Krasnokolosaya were analysed using storage proteins as genetic markers. Outcrossing indices greatly differed depending on growth conditions. The out-crossing rate was 0,35 % (Odessa, 2000) and 5,11% (Kyiv, 2004). The highest out-crossing indices were detected in homozygotes for the presence of the rye 1BL/1RS translocation. The out-crossing indices in heterozygotes for the presence of the 1BL/1RS translocation were intermediate. Differences in the out-crossing indices were detected between populations of F2 plants derived from direct and reciprocal crossing. Different directions of these differences were noted for the out-rcrossing rate and the frequency of plants with cross-pollination, on the one hand, and out-crossing intensity, on the other hand.     

Use of natural sorbents for removal of mutagens from liquid fluorine-organic waste products of monomer FC-141 manufacture

Study of total mutagenic effects of liquid fluorine-organic waste products of monomer FC-141 manufacture has been carried out. Induction of gene mutations according to the mechanism of pair base replacement and shift of reading frame and induction of chromosomal aberrations, in particular deletions and translocations, has been shown. Expediency of use of natural sorbents for mutageneity removal from fluorine-organic waste products was investigated. Zeolites and glauconites appeared to be the most effective ones.     

Ethanol acts as a potent agent sensitizing colon cancer cells to the TRAIL-induced apoptosis

Identification of mechanisms of modulation of the TNF-related apoptosis-inducing ligand (TRAIL)-induced apoptosis is important for its potential use in anticancer therapy. Ethanol can induce cell death in vitro and in vivo by different signalling pathways. Its effect in combination with death ligands is unknown. We investigated how ethanol modulates the effects of TRAIL in colon cancer cells. After combined TRAIL and ethanol treatment, a potentiation of caspase-8, -9, -3 activation, a proapoptotic Bid protein cleavage, a decrease of mitochondrial membrane potential, a complete poly(ADP)ribose polymerase cleavage, and disappearance of antiapoptotic Mcl-1 protein were demonstrated. Ethanol acts as a potent agent sensitizing colon cancer cells to TRAIL-induced apoptosis.