Functional features of microbial communities in the digestive tract of field voles (Microtus rossiaemeridionalis and Clethrionomys glareolus)

The nitrogen-fixating and cellobiohydrolase activity, the nitrogen (N) and carbon (C) contents, and the number of microorganisms in the prestomach, cecum, and colon of two vole species were studied: the southern vole (Microtus rossiaemeridionalis) and the bank vole (Clethrionomys glareolus), which is characterized by a mixed type of diet. The nitrogen-fixating activity in the cecum was found to be the highest in the voles compared with the mammals studied earlier. The seasonal dynamics of both nitrogenase and cellobiohydrolase activities was registered in the southern vole. The structure of the microbial complex in the southern vole is more varied and includes microorganisms associated with plant substrates.     

The Structural and Functional State of Soil Microbiota in a Chemically Polluted Environment

The structural and functional diversity of the main ecological trophic groups of soil microorganisms in meadow soils of the Central Urals anthropogenically contaminated with heavy metals was studied. The increase in the total numbers of these microorganisms in technozems, in comparison with those in agrozems, is due to the higher abundance of iron-reducing, denitrifying, nitrogen-fixing, and sulfate-reducing bacteria, an increase in cellulolytic activity, and the dependence of these characteristics on the toxic load of the soil. A reductive structure of the microbial community with the predominance of r-strategists, which reflects earlier stages of microbiocenoses succession under soil contamination, is formed under soil pollution with heavy metals.     

Unexpected transformation of black hole quenchers in electrophoretic purification of the fluorescein-containing TaqMan probes

The fluorescence quenchers BHQ1 and BHQ2 can be modified by trace amounts of ammonium persulfate, used for initiating gel polymerization, in electrophoretic purification of TaqMan probes using a denaturing polyacrylamide gel. The case study of BHQ1 quencher has demonstrated that a Boyland–Sims reaction proceeds in the presence of ammonium persulfate to give the corresponding sulfate. The absorption maximum of the resulting quencher shifts to the short-wavelength region relative to the absorption maximum of the initial BHQ1. The TaqMan probe containing such a quencher is less efficient as compared with the probe carrying an unmodified BHQ1. The presence of fluorescein in TaqMan probe plays decisive role in this transformation: the quencher modification proceeds at a considerably lower rate when the fluorescein is absent or replaced with a rhodamine dye (for example, R6G). It is assumed that the observed reaction can take place in two ways—both in darkness and in the reaction of the quencher in an excited state due to energy transfer from the fluorophore irradiated by light.     

Specific Features of Nitrogen Transformation in the Soddy-Podsolic Soil in the Colonies of the Common Vole Microtus arvalis

The influence of common vole Microtus arvalison processes of nitrogen fixation and denitrification in the soddy-podsolic soil was studied. In the common vole colonies, the level of nitrogen fixation was reliably lower and that of denitrification higher, than in the control soil outside these colonies. Nitrogen-containing excretory products of voles accumulating in the soil are among the main factors that determine the activity of these processes.     

Growth, structure, stomatal responses and secondary metabolites of birch seedlings (Betula pendula) under elevated UV-B radiation in the field

Three-year-old birch (Betula pendula Roth.) seedlings were exposed, in the field, to supplemental levels of UV-B radiation. Control seedlings were exposed to ambient levels of UV radiation, using arrays of unenergized lamps. A control for UV-A radiation was also included in the experiment. Enhanced UV-B radiation had no significant effects on height growth, and shoot and root biomass of birch seedlings. Leaf expansion rate increased transiently in the middle of the growing period in enhanced UV-B- and UV-A-exposed plants; however, final leaf size and relative growth rate remained unaffected. Leaf thickness and spongy intercellular spaces were increased in UV-B-exposed seedlings along with increased density of glandular trichomes. At the ultrastructural level, enhanced UV-B increased the number of cytoplasmic lipid bodies, and abnormal membrane whorls were found. Both enhanced UV-B and UV-A radiation induced swelling of chloroplast thylakoids. Stomatal density and conductance were significantly increased by elevated UV-B radiation. UV-A radiation increased the length and width of stomata, whereas UV-B radiation had only a marginal effect on stomatal size. UV-A and enhanced UV-B radiation attenuated the appearance of necrotic spots in autumn, probably caused by the fungus Pyrenopeziza betulicola, suggesting a direct harmful effect of UV on pathogens or reduced susceptibility to pathogens in UV-exposed seedlings. Secondary metabolite analysis showed increases in (+)-catechin, quercetin, cinnamic acid derivative, apigenin and pentagalloylglucose in birch leaves under enhanced UV-B radiation. Negative correlations between apigenin, and particularly quercetin concentrations and lipid peroxidation levels indicated an antioxidant role of secondary metabolites in birch leaves exposed to UV-B radiation.     

Universal oligonucleotide microarray for sub-typing of Influenza A virus

A universal microchip was developed for genotyping Influenza A viruses. It contains two sets of oligonucleotide probes allowing viruses to be classified by the subtypes of hemagglutinin (H1-H13, H15, H16) and neuraminidase (N1-N9). Additional sets of probes are used to detect H1N1 swine influenza viruses. Selection of probes was done in two steps. Initially, amino acid sequences specific to each subtype were identified, and then the most specific and representative oligonucleotide probes were selected. Overall, between 19 and 24 probes were used to identify each subtype of hemagglutinin (HA) and neuraminidase (NA). Genotyping included preparation of fluorescently labeled PCR amplicons of influenza virus cDNA and their hybridization to microarrays of specific oligonucleotide probes. Out of 40 samples tested, 36 unambiguously identified HA and NA subtypes of Influenza A virus.     

The main features of Bacillus thuringiensis δ-endotoxin molecular structure

The crystal-forming proteins (-endotoxins) produced by various serotypes of Bacillus thuringiensis and toxic for Lepidoptera reveal the same pattern of molecular organisation. These proteins (M _r of ca. 145,000–130,000) contain an N-terminal domain (M _r of 85,000–65,000) resistant to proteolysis whereas their C-terminal moieties (M _r of 65,000) undergo an extensive degradation by trypsin that leads to stepwise cleavage off the fragments with M _r of 15,000–35,000.The N-terminal domain from serotype V -endotoxin is active when introduced into the hemocoel of Galleria mellonella larvae. Hence, it correponds to the true toxin normally formed by larva proteases action on the crystalforming protein (protoxin). Some differences were found in the properties of the N-terminal domains isolated from the crystal-forming proteins of III, V and IX serotypes, e.g., in their solubility, digestion by subtilisin, molecular weights and the distribution of methionine residues along the polypeptide chains.Abbreviations SDS sodium dodecyl sulphate - PAGE polyacryl amide gel electrophoresis - CFP crystal-forming protein - DNS 5-dimethylamino-1-naphthalene-sulphonyl