Molecular genetic investigation of sugar beet (<Emphasis Type="Italic">Beta vulgaris</Emphasis> L.)

Molecular genetic studies of sugar beet (Beta vulgaris L.) are reviewed as a basis for the development of genomics of this species. The methods used to study structural and functional genomics are considered. The results and their application to increase the efficiency of sugar beet breeding are discussed.     

A cell-based ultra-high-throughput screening assay for identifying inhibitors of D-amino acid oxidase

Enzymes are often considered less "druggable" targets than ligand-regulated proteins such as G-protein-coupled receptors, ion channels, or other hormone receptors. Reasons for this include cellular location (intracellular vs. cell surface), typically lower affinities for the binding of small molecules compared to ligand-specific receptors, and binding (catalytic) sites that are often charged or highly polar. A practical drawback to the discovery of compounds targeting enzymes is that screening of compound libraries is typically carried out in cell-free activity assays using purified protein in an inherently artificial environment. Cell-based assays, although often arduous to design for enzyme targets, are the preferred discovery tool for the screening of large compound libraries. The authors have recently described a novel cell-based approach to screening for inhibitors of a phosphatase enzyme and now report on the development and implementation of a homogeneous 3456-well plate assay for D-amino acid oxidase (DAO). Human DAO was stably expressed in Chinese hamster ovary (CHO) cells, and its activity was measured as the amount of hydrogen peroxide detected in the growth medium following feeding the cells with D-serine. In less than 12 weeks, the authors proved the concept in 96-and then 384-well formats, miniaturized the assay to the 3456-well (nanoplate) scale, and screened a library containing more than 1 million compounds. They have identified several cell-permeable inhibitors of DAO from this cell-based high-throughput screening, which provided the discovery program with a few novel and attractive lead structures.     

Morphological features of the larvae of spider crab <Emphasis Type="Italic">Pugettia quadridens</Emphasis> (Decapoda: Majidae) from the Northwestern Sea of Japan

The entire cycle of larval development of the spider crab Pugettia quadridens (de Haan, 1850) (Decapoda: Majidae), widespread in Peter the Great Bay (Sea of Japan) is studied under the laboratory conditions. The development cycle of this species comprises prezoea, zoea I, zoea II, and megalopa. At a temperature of 18–20° C larval development took from 11 to 15 days. Zoea II is described in detail for the first time. Many morphological characters are found distinguishing zoea and megalopa of P. Quadridens in Russian waters from the larvae of this species in Japanese and Korean waters. Some characters of larvae are similar in P. Quadridens and the related species of the genus Pugettia. The larvae of P. Quadridens occur in the plankton of Vostok Bay from late June to late October with a density up to 5 ind/m³ at a surface water temperature of 13–21°C. They are easily distinguished from the other brachyuran larvae of this region by the absence of lateral spines on the carapace.Original Russian Text Copyright © 2004 by Biologiya Morya, Kornienko, Korn.     

Variable Tandem Repeat VcA of Vibrio cholerae

Computer analysis revealed seven potential variable-number tandem-repeat (VNTR) loci in the Vibrio cholerae genome. Specific primers were designed to amplify locus VcA located on chromosome 2 and containing a TGCTGT repeat. The locus was found in all tested strains from aV. cholerae strain collection, the repeat number varying from 3 to 23. In total, 14 VcA alleles were observed. The VcA locus was proposed as a marker for the molecular typing of V. cholerae strains.     

L1 (LINE-1) retrotransposable elements provide a "fossil" record of the phylogenetic history of murid rodents

The single most difficult problem in phylogenetic analysis is deciding whether a shared taxonomic character is due to common ancestry or one that appeared independently due to convergence, parallelism, or reversion to an ancestral state. Mammalian L1 retrotransposons undergo periodic amplifications in which multiple copies of the elements are interspersed in the genome. Because these elements apparently are transmitted only by inheritance and are retained in the genome, a shared L1 amplification event can only be an inherited ancestral character. We propose that L1 amplification events can be an excellent tool for analyzing mammalian evolution and demonstrate here how we addressed several refractory problems in rodent systematics using L1 DNA as a taxonomic character.