Species richness–variability relationships in multi-trophic aquatic microcosms

While species loss may affect the temporal variability of populations and communities differently in multi- versus single-trophic level communities, the nature of these differences are poorly understood. Here, we report on an experiment where we manipulated species richness of multi-trophic rock pool invertebrate communities to determine the effects of species richness, S, on the temporal variability of communities, populations, and individual species. As in single-trophic level studies, temporal variability in community abundance decreased with increasing species richness. However, in contrast to most studies in single-trophic level systems, temporal variability of populations also decreased as species richness increased. Furthermore, the variability of the constituent populations strongly correlated with variability of community abundance suggesting that, in rock pools, S affects community variability through its stabilizing effect on component populations. Our results suggest that species loss may affect population and community variability differently in multi-trophic versus single trophic level communities. If this is so, then the mechanisms proposed to underlie the effects of S on community variability in single-trophic communities may have to be supplemented by those that describe contributions to population stability in order to fully describe the patterns observed in multi-trophic communities.     

Synthesis of Fragments of the Peptide Component of Pseudobactin

Pseudobactin is a structurally complex and physiologically important siderophore (microbial iron chelator) from Pseudomonas putida- fluorescens. Various fragments of the unusual peptide component of pseudobactin listed below were prepared by solution-phase peptide synthesis. L -Lys· D -threo-β-OH Asp· L -Ala· D -allo-Thr· L -Ala L -Lys· D -threo-βOH Asp· L -Ala· D -allo-Thr D -threo-β-OH Asp· L -Ala· D - allo-Thr· L -Ala· D -N-OH-cycloOrn D -threo-β-OH-Asp· L -Ala· D -allo-Thr· L -Ala L -Ala· D -allo-Thr· L - Ala· D -N-OH-cycloOrn A class of related peptides named pseudomycins have shown promising antifungal activity. To examine if these peptide fragments above would elicit similar activity, the fragments were tested and found to have no antifungal activity in limited bioassays.     

Relationship between the spatial scale and biotic variability in a wetland ecotone

We studied potential effects of the expansion of a wetland ecotone on phytoplankton communities. The expansion of ecotone width and emergence of a mosaic of habitats are expected outcomes of a reduction of carp numbers and a consequent managed vegetation recovery. Specifically, we investigated the effects of decreasing size of open water cells on species richness, abundance and diversity. In a set of experimental enclosures of four different sizes we sampled phytoplankton weekly during 1991. The phytoplankton communities showed similar patterns of seasonal change but no clear differences in species abundance or richness that could be attributed to the system size. Notably, however, the magnitude of variation in the community structure metrics responded strongly to the enclosure size. This indicates that the importance of scale may not be fully appreciated when analyzed in the light of standard community measures. We tentatively conclude that the variation in species composition, individual responses, richness, and abundance may result in an increasing diversification of the wetland ecotone as the recovery of vegetation advances.     

Expression of the c-Kit receptor in germ cells of the seminiferous epithelium in rats with hormonal imbalance

The aim of the study was to investigate the effects of pharmacologically induced hormonal imbalance in adult male rats treated with letrozole and rats exposed to soya isoflavones on the testicular morphology and c-Kit receptor (c-Kit-R) expression in germ cells. The study was conducted during all developmental periods: prenatal period, lactation, youth, and sexual maturity. Morphological and morphometrical analyses were performed on testicular section, and c-Kit-R was identified using immunohistochemistry. In addition, concentration of circulating steroids was measured in mature rats exposed to soya isoflavones. A significant reduction in testosterone level in rats exposed to soya isoflavones, and the sloughing of the premature germ cells into the lumen of the seminiferous tubules in the testes of both groups of rats were observed. Immunohistochemistry showed a decrease in c-Kit-R expression in germ cells of both experimental groups. Morphometric analysis indicated a decreased thickness of the layers occupied by c-Kit-R-positive spermatogonia, and a decreased diameter of the seminiferous tubules in the testes of both experimental groups of animals. In conclusion, the pharmacologically induced reduction of the estradiol level in adult rats and the diminished level of testosterone in rats exposed to soya isoflavones during the prenatal period, lactation and up to maturity caused similar morphological and functional changes associated with the decreased c-Kit-R expression in germ cells in the seminiferous epithelium. These findings demonstrate the importance of the estrogen/androgen balance for normal testicular morphology and spermatogenesis.     

Population synchrony decreases with richness and increases with environmental fluctuations in an experimental metacommunity

Fluctuations of local but connected populations may show correlation or synchrony whenever they experience significant dispersal or correlated environmental biotic and abiotic variability. Synchrony may be an important variable in multispecies systems, but its nature and implications have not been explicitly examined. Because the number of locally coexisting species (richness) affects the population variability of community members, we manipulated richness under different regimes of environmental fluctuation (EF). We predicted that the temporal synchrony of populations in a species should decline with increasing richness of the metacommunity they live in. Additionally, we predicted that specialist species that are sensitive to a specific environmental factor would show higher synchronization when EF increases. We thus created experimental communities with varied richness, EF, and species specialization to examine the synchronizing effects of these factors on three aquatic invertebrate species. We created four levels of richness and three levels of EF by manipulating the salinity of the culture media. Monocultures exhibited higher population synchrony than metacommunities of 2–4 species. Furthermore, we found that species responded differently to EF treatments: high EF enhanced population synchrony for the specialist and intermediate species, but not for the generalist species. Our findings emphasize that the magnitude of EF and species richness both contribute to determine population synchrony, and importantly, our results suggest that biotic diversity may actually stabilize metacommunities by disrupting synchrony.     

Use of partial least squares regression to impute SNP genotypes in Italian Cattle breeds

Background

The objective of the present study was to test the ability of the partial least squares regression technique to impute genotypes from low density single nucleotide polymorphisms (SNP) panels i.e. 3K or 7K to a high density panel with 50K SNP. No pedigree information was used.

Methods

Data consisted of 2093 Holstein, 749 Brown Swiss and 479 Simmental bulls genotyped with the Illumina 50K Beadchip. First, a single-breed approach was applied by using only data from Holstein animals. Then, to enlarge the training population, data from the three breeds were combined and a multi-breed analysis was performed. Accuracies of genotypes imputed using the partial least squares regression method were compared with those obtained by using the Beagle software. The impact of genotype imputation on breeding value prediction was evaluated for milk yield, fat content and protein content.

Results

In the single-breed approach, the accuracy of imputation using partial least squares regression was around 90 and 94% for the 3K and 7K platforms, respectively; corresponding accuracies obtained with Beagle were around 85% and 90%. Moreover, computing time required by the partial least squares regression method was on average around 10 times lower than computing time required by Beagle. Using the partial least squares regression method in the multi-breed resulted in lower imputation accuracies than using single-breed data. The impact of the SNP-genotype imputation on the accuracy of direct genomic breeding values was small. The correlation between estimates of genetic merit obtained by using imputed versus actual genotypes was around 0.96 for the 7K chip.

Conclusions

Results of the present work suggested that the partial least squares regression imputation method could be useful to impute SNP genotypes when pedigree information is not available.     

Synthesis and evaluation of 3-aryl piperidine analogs as potent and efficacious dopamine D4 receptor agonists

A series of 3-aryl piperidine analogs with 2-piperidinoalkylamino or 2-piperidinoalkyloxy fused bicyclic rings were prepared and found to be potent and efficacious human dopamine D4 agonists. The synthesis and structure-activity relationship (SAR) studies that led to the identification of these compounds are discussed.     

Biogeographic variation in coral species diversity on coral reefs in three regions of Indonesia

Abstract . This paper assesses variation in coral species diversity within the Indonesian archipelago, and the influence of regional species pools, geomorphology and anthropogenic pollution on coral species diversity and occurrence. We obtained transects from 33 sites on 14 reefs in three regions of Indonesia: Ambon (Moluccas), South Sulawesi and the Java Sea. We determined the within‐site species richness by using species‐sampling curves. Cluster analysis and multi‐dimensional scaling showed that land‐based pollution was the primary determinant of coral species diversity and species occurrence on reefs. Relatively unaffected reference sites in eastern Indonesia were approximately 20% more diverse than Java Sea reference sites. Rare species formed a higher proportion of the coral fauna on eastern Indonesian sites, and eastern Indonesian apparent endemic species contributed approximately 25% of the total species pool sampled. Between‐site variation in species occurrence was lower on Java Sea reefs than on eastern Indonesian reefs. A larger species pool in eastern Indonesia than in the Java Sea probably accounted for most of the difference in within‐site species diversity between eastern Indonesian and Java Sea reference sites. High fishing intensity in the Java Sea, including destructive fishing practices, may have also contributed to reduced within‐site species diversity on Java Sea reference reefs. Despite the fact that the Java Sea was exposed during Pleistocene lowstands, and was recolonized by marine organisms only within the last 10 000 years, coral species diversity and assemblage composition on the Java Sea reefs was largely similar to open ocean reefs in eastern Indonesia.     

New records for two mosquito predators [Turbellaria: Mesostoma] in the northeastern United States

The accumulated data indicate that mesostomid flatworms are efficient predators of mosquito larvae. This paper presents the 1st published records for 3Mesostoma Ehrenberg, including 2 predators of mosquitoes.Mesostoma californicum Hyman,Mesostoma vernale Hyman, andMesostoma sp. cf.lingua Abildgaard were discovered in a temporary pool in Massachusetts.M. californicum andM. sp. cf.lingua were found to be efficient predators on mosquitoe larvae.

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Résumé Les observations accumulées indiquent que les larves des Plathelminthes mesostomides sont des prédateurs efficaces des larves de moustiques. Cette note présente les premières mentions de 3Mesostoma Ehrenberg incluant 2 prédateurs de moustiques.Mesostoma californicum Hyman,Mesostoma vernale Hyman, etMesostoma sp. cf.lingua Abildgaard furent découverts dans une mare temporaire du Massachusetts.M. californicum etM. sp. cf.lingua ont été reconnus comme des prédateurs efficaces des larves de moustiques.