Concentration and chemical form of dietary zinc shape the porcine colon microbiome,its functional capacity and antibiotic resistance gene repertoire

Despite a well-documented effect of high dietary zinc oxide on the pig intestinal microbiota composition less is it yet known about changes in microbial functional properties or the effect of organic zinc sources. Forty weaning piglets in four groups were fed diets supplemented with 40 or 110 ppm zinc as zinc oxide, 110 ppm as Zn-Lysinate, or 2500 ppm as zinc oxide. Host zinc homeostasis, intestinal zinc fractions, and ileal nutrient digestibility were determined as main nutritional and physiological factors putatively driving colon microbial ecology. Metagenomic sequencing of colon microbiota revealed only clear differences at genus level for the group receiving 2500 ppm zinc oxide. However, a clear group differentiation according to dietary zinc concentration and source was observed at species level. Functional analysis revealed significant differences in genes related to stress response, mineral, and carbohydrate metabolism. Taxonomic and functional gene differences were accompanied with clear effects in microbial metabolite concentration. Finally, a selection of certain antibiotic resistance genes by dietary zinc was observed. This study sheds further light onto the consequences of concentration and chemical form of dietary zinc on microbial ecology measures and the resistome in the porcine colon.Subject terms: Microbiome, Applied microbiology     

Can antibrowsing defense regulate the spread of woody vegetation in arctic tundra?

Global climate warming is projected to promote the increase of woody plants, especially shrubs, in arctic tundra. Many factors may affect the extent of this increase, including browsing by mammals. We hypothesize that across the Arctic the effect of browsing will vary because of regional variation in antibrowsing chemical defense. Using birch (Betula) as a case study, we propose that browsing is unlikely to retard birch expansion in the region extending eastward from the Lena River in central Siberia across Beringia and the continental tundra of central and eastern Canada where the more effectively defended resin birches predominate. Browsing is more likely to retard birch expansion in tundra west of the Lena to Fennoscandia, Iceland, Greenland and South Baffin Island where the less effectively defended non‐resin birches predominate. Evidence from the literature supports this hypothesis. We further suggest that the effect of warming on the supply of plant‐available nitrogen will not significantly change either this pan‐Arctic pattern of variation in antibrowsing defense or the resultant effect that browsing has on birch expansion in tundra. However, within central and east Beringia warming‐caused increases in plant‐available nitrogen combined with wildfire could initiate amplifying feedback loops that could accelerate shrubification of tundra by the more effectively defended resin birches. This accelerated shrubification of tundra by resin birch, if extensive, could reduce the food supply of caribou causing population declines. We conclude with a brief discussion of modeling methods that show promise in projecting invasion of tundra by woody plants.     

Revegetation following experimental disturbance in a boreal old-growth Picea abies forest

Abstract. We studied revegetation patterns after experimental fine-scale disturbance (e.g. uprooting) in an old-growth Picea abies forest in southeastern Norway. An experimental severity gradient was established by manipulation of the depth of soil disturbance; two types of disturbed areas were used. Species recovery was recorded in the disturbed patches in three successive years after disturbance. The cover of vascular plants and, even more so the cover of bryophytes and lichens, recovered slowly after disturbance. The least severe treatments (removal of vegetation and removal of vegetation and the litter layer) was followed by the fastest recovery. The mean number of vascular plant species was usually higher three years after disturbance than before disturbance, while the opposite was true for bryophytes. Several vascular plant species that were abundant in intact forest floor vegetation (Vaccinium myrtillus, V. vitis-idaea and Deschampsia flexuosa) recovered during a three-year period primarily by resprouting from intact rhizomes and clonal in-growth. Other important recovery mechanisms included germination from a soil-buried propagule bank (e.g. Luzula pilosa, Plagiothecium laetum agg., Pohlia nutans and Polytrichum spp.) and dispersal of propagules into the disturbed patches (e.g. Betula pubescens and Picea abies). Microsite limitation seemed to occur in several species that were abundant in the soil propagule bank (e.g. the ferns Athyrium filix-femina, Gymnocarpium dryopteris and Phegopteris connectilis) but which did not appear in disturbed patches. Disturbance severity influenced revegetation patterns, recorded both as trajectories of vegetation composition in a DCA ordination space and as change in floristic dissimilarity. The length of the successional path (compositional change measured in β-diversity units) increased with increasing disturbance severity, and was also influenced by the area of the disturbed patch and the distance to intact vegetation. The rate of succession depended on the method by which it was measured; decreasing year by year in floristic space, while first decreasing and then increasing in ordination space. The reason for this difference is explained.     

Pasteurellosis in Reindeer in Northern Norway

Lung inflammations in reindeer caused by Pasteurella multocida were reported from Scandinavian countries already at the beginning of this century. Several outbreaks have been recorded in reindeer herds in Norway. Observations made at the fall reindeer slaughtering, and in reindeer herds in Finnmark seem to indicate an endemic state of this infection with subclinical carriers. Predisposing factors and lowered specific immune status may probably play important roles when fatal outbreaks occur.     

Fish kairomone regulation of internal swarm structure in Daphnia pulex (Cladocera: Crustacea)

In this laboratory experiment, swarms of D. pulex were artificially created by placing thirty individuals in small chambers containing 130 ml of water. The swimming behaviour of the animals was measured using a video camera and a programme to digitize observations. The D. pulex swimming in water with fish kairomones had a more uniform swimming speed compared with animals in control water. If aggregated prey individuals benefit from a reduced predation risk, and this risk is further reduced by uniformity of swarm members, the uniformity of swimming speed can be interpreted as an behavioural adjustment to minimize the vulnerability to predation. This revised version was published online in July 2006 with corrections to the Cover Date.     

INDUCTION OF APOGAMY IN MEGAGAMETOPHYTES OF ZAMIA INTEGRIFOLIA

Ovules of Zamia integrifolia Ait. were dissected and megagametophytes and embryos excised and cultured. Induction of apogamous, haploid roots and leaves by auxin and kinetin, in combination with glutamine, asparagine and alanine, was observed. The organs resembled their normal diploid counterparts. 2,4-D at 1 ppm was more effective than 1 ppm IAA, but less effective than 5 ppm IAA. The highest percentage of apogamy was 59% after 5 months of culture. In several cultures embryoids were formed both by diploid excised embryos and by haploid megagametophtyes.     

Isolation of Neisseria Ovis and a Colesiota Conjunctivae-Like Organism from Cases of Kerato-Conjunctivitis in Reindeer in Northern Norway

Eye inflammation in reindeer seems to be a condition frequently observed in many reindeer herding areas. Bergmann (1912) reported outbreaks of the condition in Scandinavia already at the beginning of this century, and it spread like a contagious disease. The aetiology seems to be complex, as Bergmann found many different kinds of bacteria in his material. In a recent publication, Rehbinder (1970) reported the occurrence of larvae of the reindeer nostril fly (Cephenomyia trompe) in affected eyes. In Norway, eye inflammation in reindeer has also been observed, although outbreaks of the disease seem to be rare.     

A common pathway of sulfide oxidation by sulfate-reducing bacteria

Abstract Pseudomonas putida strain DMB capable of growing on 3,4-dimethylbenzoic acid as the only C and energy source was isolated by enrichment techniques. It does not utilize for growth or cooxidize the other dimethylbenzoate isomers tested. 3,4-Dimethylsalicylic acid, 3,4-dimethylphenol and 3,4-dimethylcatechol were isolated and identified by nuclear magnetic resonance and mass spectra in the reaction mixture of P. putida washed cells. The detection of the two first metabolites suggests that the initial step in the degradation of 3,4-dimethylbenzoic acid is the formation of 3,4-dimethylcyclohexa-3,5-diene-1, 2-diol-1-carboxylic acid which underwent an acid-catalyzed dehydration yielding 3,4-dimethylsalicylic acid and 3,4-dimethylphenol. Further degradation proceeds through 3,4-dimethylcatechol via the meta pathway.