Community structure of the epipelagic zooplankton community under the sea-ice of the northern Weddell Sea

Summary The present paper describes the composition, abundance, biomass and diversity of the meso- and macrozooplankton in the epipelagic zone of the open water and under the ice of the northern Weddell Sea. Samples were collected in October/November 1988 with a multiple RMT1+8 net during the European Polarstern Study (EPOS). Multivariate analysis resulted in two distinct site clusters, a northern one mainly located in the open water/marginal ice zone and a southern one extending from the marginal ice zone into the consolidated pack-ice. Clusters were, however, faunistically coherent with a high degree in positive covariation of species. There was no basis for the separation into communities, but differences occurred on the population level in numerical abundances, biomass (wet weight) and in a shift in species dominance. Different ice zones and vertical layers were tested among each other with regard to their relative species abundance. Significant differences were found between the upper 60 m layer of the open sea, the upper 60 m layer of the closed pack-ice and the so called transitional zone. Species richness and diversity was lowest directly under the closed pack-ice. Abundance and biomass was highest in the surface layer of the open water, while both variablès decreased dramatically under the ice. Copepods dominated numerically in open water, while salps dominated in biomass. Euphausia superba and Thysanoessa macrura were the dominant species in the upper water column of the closed pack-ice zone. Krill was the only species with increasing abundance in the sub-ice area and a dominance in biomass of more than 91% demonstrated its unique importance for the sub-ice habitat.Data presented here were collected during the European Polarstern Study (EPOS) sponsored by the European Science Foundation     

Identification of Two Protein-Signaling States Delineating Transcriptionally Heterogeneous Human Medulloblastoma

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Untersuchungen zur Frage der Variabilität der Formaldehyd- und Phenol-Empfindlichkeit von Micrococcus pyogenes var. aureus (Staphylococcus aureus)

Zusammenfassung Die Frage der Variabilität der Widerstandsfähigkeit von Micrococcus pyogenes var. aureus (Staphylococcus aureus) gegen Formaldehyd und Phenol wurde experimentell geprüft. Als Kriterium für die Empfindlichkeit von Populationen wurden eine Endmethode und ein Wachstumstest herangezogen. Von zwei Kulturen, die während 3 Monaten in HCHO-Passagen sehr schwacher Konzentrationen gezogen worden waren, zeigte sich eine in ihrer Widerstandsfähigkeit nachweisbar erhöht. Außerdem wurde in sukzessiven HCHO-Bouillonpassagen ein Stamm gezüchtet, der durch erbbedingte starke Verklumpung selektiv bevorteilt ist. Ein in Phenol selektierter Stamm verhielt sich gegen dieses Gift erheblich resistenter als der Standardstamm; seine Widerstandsfähigkeit gegen HCHO war dagegen unverändert geblieben.Die erhöhte Vitalität der resistenteren Stämme in entsprechenden Medien konnte dank unterschiedlicher Koloniepigmentierung (hell-aureus) über eine Anzahl von Zellgenerationen quantitativ verfolgt und graphisch dargestellt werden. In den Versuchen wurden mehrfach Abweichungen der Koloniepigmentierung beobachtet, die zum Teil als Sektoren auftraten und deren mutative Entstehung als gesichert angesehen werden muß. In der Diskussion wurde versucht, durch Gegenüberstellung der erhaltenen Ergebnisse mit denen anderer Autoren ein allgemeines Bild von den Resistenzerscheinungen zu entwerfen, ferner wurde auf einige Schlußfolgerungen namentlich für die Bakteriengenetik und die experimentelle Bakteriologie hingewiesen.Prof. Dr. K. Heicken     

Competition for Sulfate and Ethanol Among Desulfobacter, Desulfobulbus, and Desulfovibrio Species Isolated from Intertidal Sediments

Competition for sulfate and ethanol among Desulfobacter, Desulfobulbus, and Desulfovibrio species isolated from estuarine sediments was studied in energy-limited chemostats. Desulfovibrio baculatus was the most successful competitor for limiting amounts of sulfate and ethanol, followed by Desulfobulbus propionicus. The success of Desulfovibrio baculatus was dependent on the availability of sufficient iron. Of the three species studied, Desulfobacter postgatei was the least successful competitor for limiting amounts of sulfate. Although stimulating the growth of Desulfobacter postgatei, addition of Ca-saturated illite particles to culture media did not affect the outcome of competition for sulfate. Thus, under sulfate limitation acetate accumulated. This phenomenon was briefly discussed in relation to the flow of electrons during anaerobic mineralization in marine and estuarine sulfate-limited sediments.     

Proline transport activity in Escherichia coli membrane vesicles of different buoyant densities

Cytoplasmic membrane vesicles prepared by lysis of Escherichia coli W 3110 spheroplasts in a French press at 0° C are heterogeneous with respect to density due to membrane protein aggregation as a result of lateral phase separation of membrane phospholipids and to the presence of more or less outer membrane. These different vesicle classes can be separated on isopycnic density gradients. Assays for various membrane-associated functions show that the membranes differ not only with respect to density and structure but also with respect to function.The proline transport system (as detected by uptake experiments with the artificial electron donor ascorbate-phenazine methosulfate) shows maximal activities in membrane fractions that have considerably higher densities than the normal cytoplasmic membrane. This is always the case, whether vesicles are isolated from membranes that exhibit a temperature-induced protein aggregation or not. A correlation between high proline transport activity and the presence of vesicles with double membranes (consisting of outer and inner membrane) has been established. The possibility that the outer membrane protects the transport system in the cytoplasmic membrane during the isolation of vesicles is discussed.     

Improvement of recovery and repeatability in liquid chromatography-mass spectrometry analysis of peptides

Poor repeatability of peak areas is a problem frequently encountered in peptide analysis with nanoLiquid Chromatography coupled on-line with Mass Spectrometry (nanoLC-MS). As a result, quantitative analysis will be seriously hampered unless the observed variability can be corrected in some way. Currently, labeling techniques or addition of internal standards are often applied for this purpose. However, these procedures are elaborate and error-prone and may render complex samples even more complex. Moreover, whenever poor repeatability results from variable recovery, not just quantification, but also sensitivity is affected. We have studied the parameters influencing the repeatability of chromatographic peak areas for a model set of proteolytic peptides (i.e., a cytochrome c tryptic digest) in nanoLC-MS analysis. It is demonstrated that repeatability issues are mainly due to poor recovery of peptides from the sample vial. Problems are largely resolved by addition of an organic modifier to the sample vial to improve solubility of the peptides, but care needs to be taken not to lose peptides due to reduced affinity for reversed-phase materials. Good results are obtained when applying dimethylsulfoxide (DMSO) for this purpose. When applying DMSO, repeatability increases, and the limit of detection (LOD) decreases. For the most hydrophobic peptides, a gain in LOD of at least an order of magnitude is obtained. In an aqueous sample containing 0.1% formic acid (FA), it is possible to detect 100-200 fmol of peptide, whereas +/-10 fmol can be detected in a sample containing 5% FA and 25% DMSO (10 microL injections).     

Physiological and phylogenetic characterization of a stable benzene-degrading, chlorate-reducing microbial community

A stable anoxic enrichment culture was obtained that degraded benzene with chlorate as an electron acceptor. The benzene degradation rate was 1.65 mM benzene per day, which is similar to reported aerobic benzene degradation rates but 20-1650 times higher than reported for anaerobic benzene degradation. Denaturing gradient gel electrophoresis of part of the 16S rRNA gene, cloning and sequencing showed that the culture had a stable composition after the seventh transfer. Five bacterial clones were further analyzed. Two clones corresponded to bacteria closely related to Alicycliphilus denitrificans K601. The three other clones corresponded to bacteria closely related to Zoogloea resiniphila PIV-3A2w, Mesorhizobium sp. WG and Stenotrophomonas acidaminiphila. DGGE analysis of cultures grown with different electron donors and acceptors indicated that the bacterium related to Alicycliphilus denitrificans K601 is able to degrade benzene coupled to chlorate reduction. The role of the other bacteria could not be conclusively determined. The bacterium related to Mesorhizobium sp. WG can be enriched with benzene and oxygen, but not with acetate and chlorate, while the bacterium related to Stenotrophomonas acidaminophila grows with acetate and chlorate, but not with benzene and oxygen. As oxygen is produced during chlorate reduction, an aerobic pathway of benzene degradation is most likely.     

StGA2ox1 is induced prior to stolon swelling and controls GA levels during potato tuber development

The formation and growth of a potato ( Solanum tuberosum ) tuber is a complex process regulated by different environmental signals and plant hormones. In particular, the action of gibberellins (GAs) has been implicated in different aspects of potato tuber formation. Here we report on the isolation and functional analysis of a potato GA 2-oxidase gene ( StGA2ox1 ) and its role in tuber formation. StGA2ox1 is upregulated during the early stages of potato tuber development prior to visible swelling and is predominantly expressed in the subapical region of the stolon and growing tuber. 35S-over-expression transformants exhibit a dwarf phenotype, reduced stolon growth and earlier in vitro tuberization. Transgenic plants with reduced expression levels of StGA2ox1 showed normal plant growth, an altered stolon swelling phenotype and delayed in vitro tuberization. Tubers of the StGA2ox1 suppression clones contain increased levels of GA₂₀, indicating altered GA metabolism. We propose a role for StGA2ox1 in early tuber initiation by modifying GA levels in the subapical stolon region at the onset of tuberization, thereby facilitating normal tuber development and growth.     

The impact of herbivores on nitrogen mineralization rate: consequences for salt-marsh succession

Soil net N-mineralization rate was measured along a successional gradient in salt-marsh sites that were grazed by vertebrate herbivores, and in 5-year-old exclosures from which the animals were excluded. Mineralization rate was significantly higher at ungrazed than at grazed sites. In the absence of grazing, mineralization rate increased over the course of succession, whereas it remained relatively low when sites were grazed. The largest differences in mineralization rate between grazed and ungrazed sites were found at late successional stages where grazing pressure was lowest. The amount of plant litter was significantly lower at grazed sites. In addition, the amount of litter and potential litter (non-woody, live shoots) was linearly related to net N-mineralization rate. This implies that herbivores reduced mineralization rate by preventing litter accumulation. Bulk density was higher at grazed salt-marsh sites than at ungrazed sites. This factor may also have contributed to the differences in net N-mineralization rate between grazed and ungrazed sites. Received: 30 November 1997 / Accepted: 27 August 1998