Untangling the assembly of littoral macroinvertebrate communities through measures of functional and phylogenetic alpha diversity

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The European Bioinformatics Institute web site: a new view

SUMMARY: The European Bioinformatics Institute (EBI), and outstation of the European Molecular Biology laboratory, has revamped its web site for the second time since 1997 in order to address increased user demand as well as establishing better uniformity and easier accessibility for the ever growing number of users and services it offers to the community. A GRID-like hardware infrastructure has been put in place to provide round the clock services in a redundant and reliable fashion. AVAILABILITY: http://www.ebi.ac.uk/     

Ongoing Fen–Bog Transition in a Boreal Aapa Mire Inferred from Repeated Field Sampling,Aerial Images,and Landsat Data

Ecosystems - Northern aapa mire complexes are characterized by patterned fens with flarks (wet fen surfaces) and bog zone margins with Sphagnum moss cover. Evidence exists of a recent increase in...     

Analysis of 8-hydroxy-2'-deoxyguanosine in urine using high-performance liquid chromatography-electrospray tandem mass spectrometry

8-hydroxy-2'-deoxyguanosine (8-OHdG) is a widely used biomarker of oxidative stress in research related to DNA, protein damage as well as lipid peroxidation. HPLC-MS/MS with electrospray ionization (ESI) and the use of isotopically labelled 8-OHdG as an internal standard allows a simple quantification of 8-OHdG in urine samples. HPLC separation utilized the peak cutting technique and a 1.5 mmx120 mm analytical anion exchange column. Novel method entails only minimal sample handling including the addition of a buffer and an internal standard followed by centrifugation before the samples are ready for analysis. The levels of 8-OHdG in human urine samples (n=246) varied from 0.16 to 16.48 microg/L and the corresponding creatinine-normalized values were ranged from 0.49 to 14.27 microg of 8-OHdG/g creatinine. The correlation between the developed HPLC-MS/MS method and the existing HPLC-EC method was good with an R2 value of 0.8707.     

Seasonal changes in European whitefish muscle and invertebrate prey fatty acid composition in a subarctic lake

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Cooperation and Shared Beliefs about Trust in the Assurance Game

Determinants of cooperation include ingroup vs. outgroup membership, and individual traits, such as prosociality and trust. We investigated whether these factors can be overridden by beliefs about people’s trust. We manipulated the information players received about each other’s level of general trust, “high” or “low”. These levels were either measured (Experiment 1) or just arbitrarily assigned labels (Experiment 2). Players’ choices whether to cooperate or defect in a stag hunt (or an assurance game)—where it is mutually beneficial to cooperate, but costly if the partner should fail to do so—were strongly predicted by what they were told about the other player’s trust label, as well as by what they were told that the other player was told about their own label. Our findings demonstrate the importance for cooperation in a risky coordination game of both first- and second-order beliefs about how much people trust each other. This supports the idea that institutions can influence cooperation simply by influencing beliefs.     

Life Course Trajectories of Labour Market Participation among Young Adults Who Experienced Severe Alcohol-Related Health Outcomes: A Retrospective Cohort Study

BackgroundLong-term employment trajectories of young problem drinkers are poorly understood.MethodsWe constructed retrospective labour market participation histories at ages 18–34 of 64 342 persons born in 1969–1982. Beginning from the year of each subject’s 18^th birthday, we extracted information from the records of Statistics Finland on educational attainment, main type of economic activity, months in employment, and months in unemployment for a minimum of seven years (range 7–16 years). We used information on the timing of alcohol-related hospitalizations and deaths in the same period to define problem drinkers with early onset limited course, early onset persistent course, and late onset problem drinking.ResultsEarly onset limited course problem drinkers improved their employment considerably by age, whereas early onset persistent problem drinkers experienced a constant decline in their employment by age. From the age of 18 to 34, early onset persistent problem drinkers were in employment merely 12% of the time, in comparison with 39% among the early onset limited course problem drinkers, and 58% among the general population.ConclusionsThese results indicate that young adults who were retrospectively defined as having early onset persistent course problem drinking were extensively marginalized from the labour market early on during their life course, and that their employment trajectory was significantly worse compared to other problem drinkers.     

Contrasting trends of butterfly species preferring semi-natural grasslands,field margins and forest edges in northern Europe

Indicator classifications help us to focus on the most relevant groups of species in monitoring the effects of land use changes on biodiversity. We studied changes in distribution area of 74 butterfly species preferring one of the three common habitats of boreal agricultural landscapes: semi-natural grasslands (35 species), arable field margins (7) and forest edges (32). Using extensive atlas data from four time periods during the last 50 years in Finland, we quantified trends in the occupancy of the species in 10 km grid squares, and classified them into four classes: declining (23), stable (17), increasing (27) and fluctuating (7) species. Trends among the species favouring three habitats were different: 60% of the species of semi-natural grasslands had declined, whereas 86% of the species typical of open field margins had increased. An increase also predominated in species associated with forest edges. Declining and increasing species differed in three ecological characteristics: increasing species were more mobile, utilized a wider range of habitats and, based on their larval host plants, lived in more eutrophic habitats than declining species. Species overwintering as adults showed more positive trends in occupancy than species overwintering as eggs, larvae or pupae. Observed trends in occupancy are in good agreement with long-term changes in land use and habitat availability in Finland: a long-continued decrease in the area of semi-natural grasslands and an increased amount of open forest edges and clearings due to modern forestry during the past 50 years.     

Genetic diversity inChaenomeles (Rosaceae) revealed by RAPD analysis

Genetic relatedness inChaenomeles was studied by RAPD analysis in 42 plants representing accessions of three wild species and one hybrid taxon. Amplification with 17 primers yielded a total of 156 polymorphic RAPD bands. Estimates of genetic relatedness suggest thatC. cathayensis andC. japonica are the most distantly related species, and that the former is comparatively homogeneous.Chaenomeles speciosa, which may have arisen through hybridization betweenC. cathayensis andC. japonica, takes an intermediate position between these two species. Analysis of diagnostic bands demonstrate that neitherC. speciosa norC. ×superba has any bands that do not occur in at least one ofC. cathayensis orC. japonica. Moreover,C. speciosa and the partly overlapping taxonC. ×superba are comparatively heterogeneous, which is also in accordance with a hybrid origin. Intraspecific variation was studied mainly inC. japonica; plants obtained from different sources of material formed well separated groups in the cluster analysis.     

Scaling distributional patterns of butterflies across multiple scales: Impact of range history and habitat type

Aim

Assessing the threat status of declining but yet widespread species poses a challenge to applied ecologists. Previous studies using a common metric to describe the spatial aggregation of occurrences across multiple scales, the fractal dimension D_ij, have suggested that species’ distributional trends may be deduced from readily understandable spatial patterns: Expanding species are expected to show more aggregated spatial distributions (higher value of D_ij) than declining species (lower value of D_ij). Here, we revisited these predictions using a large‐scale empirical dataset on Finnish butterflies.

Location

Finland.

Methods

For each butterfly species (n = 97) and across three spatial scales (grid squares of 10 km, 50 km and 100 km), we calculated the area of occupancy (AOO_i) as the sum of occupied grid squares. We employed values of AOO_i to derive the D_ij for each butterfly species. We then used these metrics to compare the changes in spatial patterns of distribution (?AOO_i and ?D_ij) between two time periods, 2000–2002 and 2009–2011.

Results

Majority of the studied butterfly species showed declining areas of occupancy (at the scale of 10 km, ?AOO₁₀) and fractal dimensions (across the scales from 10 km to 100 km, ?D_10–100) between the two study periods. In contrast to predictions, AOO₁₀ and D_10–100 showed negative impacts on the ?AOO₁₀, an observation that may be explained by the high proportion of declining species in our data. Butterfly species with the greatest fractal dimensions at regional scales (D_10–100) in the years 2000–2002 showed both positive long‐term distributional trends and most notable northern recent range limit shifts.

Main conclusions

Our results were in most cases congruent with the prediction of higher fractal dimension values in expanding compared to declining species. As a novel observation, many butterflies expanded northwards in spite of their occurrences getting simultaneously more scattered, particularly in southern Finland.