Monoclonal antibodies reacting with multiple epitopes on the human insulin receptor.

Monoclonal antibodies for the human insulin receptor were produced following immunization of mice with IM-9 lymphocytes and/or purified placental receptor. Four separate fusions yielded 28 antibodies, all of which reacted with receptor from human placenta, liver and IM-9 cells. Some antibodies cross-reacted to varying degrees with receptor from rabbit, cow, pig and sheep, but none reacted with rat receptor. At least 10 distinct epitopes were recognized as indicated by species specificity and binding competition experiments. All of these epitopes appeared to be on extracellular domains of the receptor as shown by binding of antibodies to intact cells. In some cases the epitopes were further localized to alpha or beta subunits by immunoblotting. Several antibodies inhibited binding of 125I-insulin to the receptor, some had no effect on binding, and others enhanced the binding of 125I-insulin. It is concluded that these antibodies will be valuable probes of receptor structure and function.     

Long-term effects and cost-benefit analysis of eight spawning gravel augmentations for Atlantic salmon and Brown trout in Norway

Hydrobiologia - River regulation alters flow and sediment regime, habitat availability, and ultimately the ecological functioning of rivers. Various restoration and mitigation measures...     

Characterizing the regularity of tetrahedral packing motifs in protein tertiary structure

MOTIVATION: While protein secondary structure is well understood, representing the repetitive nature of tertiary packing in proteins remains difficult. We have developed a construct called the relative packing group (RPG) that applies the clique concept from graph theory as a natural basis for defining the packing motifs in proteins. An RPG is defined as a clique of residues, where every member contacts all others as determined by the Delaunay tessellation. Geometrically similar RPGs define a regular element of tertiary structure or tertiary motif (TerMo). This intuitive construct provides a simple approach to characterize general repetitive elements of tertiary structure. RESULTS: A dataset of over 4 million tetrahedral RPGs was clustered using different criteria to characterize the various aspects of regular tertiary structure in TerMos. Grouping this data within the SCOP classification levels of Family, Superfamily, Fold, Class and PDB showed that similar packing is shared across different folds. Classification of RPGs based on residue sequence locality reveals topological preferences according to protein sizes and secondary structure. We find that larger proteins favor RPGs with three local residues packed against a non-local residue. Classifying by secondary structure, helices prefer mostly local residues, sheets favor at least two local residues, while turns and coil populate with more local residues. To depict these TerMos, we have developed 2 complementary and intuitive representations: (i) Dirichlet process mixture density estimation of the torsion angle distributions and (ii) kernel density estimation of the Cartesian coordinate distribution. The TerMo library and representations software are available upon request.     

Short communication. Biomass and production characteristics of the first red tide noticed in Kuwait Bay, Arabian Gulf

Observations on the first red tide off Kuwait, Arabian Gulf, yielded high biomass [55.4-262.7 g chlorophyll (Chl) a l^-1] and primary production (507.9-571.2 g C h^-1l^-1), comparable with some of the highest values reported. There were contrasting changes in the carbon assimilation ratios, composition of the phytoplankton and the contribution of nanoplankton (<20 m) between 11 and 12 May. On 11 May, carbon assimilation by nanoplankton was 2.2 g C (g Chl a)^-1 h^-1, but increased to 9.2 g C (g C (g Chl a)^-1 h^-1 the following day. Nanoplankton contributed 56 and 9% of Chl a and production, respectively, on 11 May, while net plankton (>20 m) accounted for >65% of the biomass and primary production on 12 May. Picoplankton (<3 m) contributed <8% of Chl a and <3% of production. Frequent sampling will be necessary to capture such dynamic changes and ephemeral events in these waters.