Role of anaerobiosis in virulence of Salmonella typhimuirium

Intestinal pathogens are exposed to various stress conditions during their infectious cycle. Anaerobiosis, one of such hostile condition, is offered by the host within gut and intestinal lumen, where survival, multiplication and entry into intestinal epithelial cells is priority for the invading pathogen. In the present study, a virulent strain of S. typhimurium (1402/84) was grown under anaerobic conditions and its virulence characteristics such as host cell binding, penetration and intracellular survival were compared with aerobic S. typhimurium. Anaerobically grown S. typhimurium showed significantly higher binding to immobilized mice enterocytes and intestinal mucus as compared to bacteria grown aerobically. Anaerobic bacteria also showed an early penetration of mucus and subsequent binding to underlying immobilized enterocytes, in vitro. Anaerobic S. typhimurium exhibited increased intracellular survival within spleen macrophages of mice and caused significantly higher fluid accumulation in ligated rabbit ileal loops as compared to aerobic bacteria. LD₅₀ of anaerobic S. typhimurium was also observed to be 2 fold lower when compared to aerobic bacteria. Cell surface hydrophobicity of anaerobic S. typhimurium was also found to be significantly higher than aerobic bacteria. Thus, it appears that exposure of S. typhimurium to anaerobiosis results in its enhanced virulence, adhesion and penetration of host cells.     

Increased Nitric Oxide Production in Patients with Systemic Sclerosis

Nitric oxide (NO, nitrogen monoxide) is a messenger molecule whose synthesis can be induced by proinflammatory cytokines. Increased production of NO has been reported in various inflammatory and autoimmune diseases. We studied serum nitrite and citrulline as surrogate markers for NO production in patients with systemic sclerosis (SSc) and looked for correlation with extent of disease, disease duration, age, and systemic involvement. Thirty-four patients were studied against 20 controls. The nitrite levels were significantly higher in the disease group (1588.4 +/- 998.2 nmol/ml compared to 327.8 +/- 137.7 nmol/ml; P < 0.001). The citrulline levels of the disease group were also significantly higher (5490.1 +/- 2518.3 nmol/ml compared to 3264.5 +/- 2509.7 nmol/ml in the controls; P = 0.005). There was no significant difference among limited and diffuse subgroups. There was no significant difference in patients with or without arthritis or interstitial lung disease or with other systemic involvement. On multivariate analysis there was a trend toward a rising level of nitrite with worsening lung functions (P = 0.07). Hence, there is evidence of increased NO production in patients with SSc. There is no difference between NO levels in disease subgroups or those with systemic involvement.     

Contamination issues in a continuous ethanol production corn wet milling facility

Low ethanol yields and poor yeast viability were investigated at a continuous ethanol production corn wet milling facility. Using starch slurries and recycle streams from a commercial ethanol facility, laboratory hydrolysates were prepared by reproducing starch liquefaction and saccharification steps in the laboratory. Fermentations with hydrolysates prepared in the laboratory were compared with plant hydrolysates for final ethanol concentrations and total yeast counts. Fermentation controls were prepared using hydrolysates (plant and laboratory) that were not inoculated with yeast. Hydrolysates prepared in the laboratory resulted in higher final ethanol concentrations (15.8 % v/v) than plant hydrolysate (13.4 % v/v). Uninoculated controls resulted in ethanol production from both laboratory (12.2 % v/v) and plant hydrolysates (13.7 % v/v), indicating the presence of a contaminating microorganism. Yeast colony counts on cycloheximide and virginiamycin plates confirmed the presence of a contaminant. DNA sequencing and fingerprinting studies also indicated a number of dissimilar communities in samples obtained from fermentors, coolers, saccharification tanks, and thin stillage.     

Biochemical and molecular markers in renal cell carcinoma: an update and future prospects

Cancer is a big problem in the developed world as well as in developing countries. Renal cell carcinoma (RCC) accounts for approximately 3% of adult malignancies and 90-95% of neoplasms arising from the kidney. RCC is more common in men than in women (2:1), and it most often occurs in patients between the ages of 50-70 years. In all cancers the cancerous cells release particular kind of proteins (called tumour markers) and blood tests are used to detect the presence of these markers. These tumour markers nowadays are an area of interest for oncologists who search for a possible solution in the detection and treatment of RCC. Different kinds of biochemical and molecular markers such as ferritin, MN/CA9, apoptotic index, p53, IL-2, gamma-enolase, CD44, CD95, chromosome instability and loss of heterozygosity have been tested in RCC, but so far no marker fulfils one or the other criteria to be considered as an ideal marker for RCC. This review gives basic and updated information about the different kinds of biomarkers studied in RCC and about the role implementation of genomics and proteomics in RCC.     

Endothelial nitric oxide synthase gene haplotypes and diabetic nephropathy among Asian Indians

Endothelial dysfunction plays a key role in the pathogenesis of diabetic vascular disease, including diabetic nephropathy. Endothelial-derived nitric oxide synthase (eNOS) gene polymorphisms affect eNOS activity and are associated with endothelial dysfunction. We evaluated the association of the constitutive endothelial nitric oxide synthase gene (eNOS) polymorphisms with type 2 diabetic nephropathy. We genotyped three polymorphisms of eNOS (Two SNPs: -786T > C, 894G > T and one 27-bp repeat polymorphism in Intron 4 (27VNTR)) in type 2 diabetic nephropathy patients (cases: n = 195) and type 2 diabetic without nephropathy (controls: n = 255), using validated PCR-RFLP assays. We measured serum NO levels in these subjects and examined its correlation with diabetic nephropathy and eNOS genotypes. The frequency of CC (-786T > C), TT (894G > T) and aa genotypes (27VNTR) were significantly higher in diabetic nephropathy patients as compared to the diabetes without nephropathy group (CC: P = 0.003, TT: P = 0.03, aa: P < 0.0001). These mutant genotypes were found to be associated with higher risk of nephropathy (-786T > C: OR: 5.5, 95%CI: 1.53-19.79; 894G > T: OR: 1.8, 95%CI: 1.03-3.16; Intron 4: OR: 6.23, 95%CI: 2.23-16.31). Haplotype with all the wild alleles (T-b-G) was found to be associated with a decreased risk of nephropathy (OR: 0.68, P = 0.005) and haplotype with all mutant alleles (C-a-T) was associated with higher risk of diabetic nephropathy as compared to diabetes without nephropathy group (OR: 2.6, P = 0.14). No significant linkage disequilibria were observed among the variants in this case-control study. The serum NO levels were observed to be significantly (P < 0.05) lower in mutant allele carriers ('C' allele of T-786C SNP and/or 'T' allele of G894T SNP) as compared with the wild-type allele carriers (-786T and/or 894G) within each of the subject groups (with and without nephropathy). These results suggest that the eNOS gene locus is associated with diabetic nephropathy and the functional polymorphisms (-786T > C & 894G > T) might lead to a decreased expression of eNOS gene.     

Studies on the mechanism of Salmonella typhimurium enterotoxin-induced diarrhoea

The unidirectional fluxes of Na⁺ and Cl^? were studied in Salmonella typhimurium enterotoxin-treated rats. There was net secretion of Na⁺ and Cl^? in toxin-treated animals, while in control animals there was net absorption of these ions. In the presence of the Ca²⁺-ionophore, there was net secretion of Na²⁺ and Cl^? in the control group, while the ionophore enhanced the secretion of these ions in experimental anaimals. The calcium channel blocker, verapamil, decreased the secretion induced by salmonella toxin, but could not reverse the secretion of absorption. There was no difference in the net absorption of Ca²⁺ in both the control and experimental animals. There was a significant increase in the intracellular free calcium concentrations in enterocytes isolated from toxin-treated rat intestines as compared to that in enterocytes isolated from control animals. In the presence of PMA (phorobol-12-myristated-13-acetate) there was net secretion of Na⁺ and Cl^? in the control group, while in the experimental group there was no change in the fluxes of these ions. The selective, potent inhibitor of protein kinase C, H-7 (1-(5-isoquinolinylsulphonyl)-2-methylpiperazine)_reversed the secretion of Na⁺ and Cl^? in the toxin-treated group to absorption. The addition of indomethacin also inhibited the secretion induced by salmonella toxin, but failed to reverse it to absorption. However, the addition both H-7 and indomethacin to the experimental group had a partial additive effect. These studies demonstrate that the Salmonella enterotoxin-mediated fluid secretion involved protein kinase C and the arachidonic acid metabolites and perhaps does not involve the extracellular calcium pools.     

Correlation of LUMO localization with the alpha-amylase inhibition constant in a Tendamistat-based series of linear and cyclic peptides

The glycosidase alpha-amylase is responsible for the hydrolysis of alpha(1-->4) glycosidic linkages found in dietary starch as one means for controlling blood sugar level. The effect of alpha-amylase is detrimental, however, in the disease state diabetes mellitus, where blood glucose levels are elevated due to a biochemical defect. Inhibition of the enzyme's activity would reduce glucose absorption by the small intestine. Our objective was to develop small peptides based on essential binding elements of the natural protein inhibitor, Tendamistat. These smaller analogs may be better studied structurally and conformationally to help us understand molecular-level interactions. In addition, we have been able to correlate the activity of our compounds with the lowest unoccupied molecular orbital (LUMO) localization in energy-minimized conformations. The positive charge/LUMO of most active inhibitors is localized on the central Arg residue of the required triplet. This provides a predictive model for the design of active molecules.     

Biosynthesis of Sibiromycin,a Potent Antitumor Antibiotic

Pyrrolobenzodiazepines, a class of natural products produced by actinomycetes, are sequence selective DNA alkylating compounds with significant antitumor properties. Among the pyrrolo[1,4]benzodiazepines (PBDs) sibiromycin, one of two identified glycosylated PBDs, displays the highest affinity for DNA and the most potent antitumor properties. Despite the promising antitumor properties clinical trials of sibiromycin were precluded by the cardiotoxicity effect in animals attributed to the presence of the C-9 hydroxyl group. As a first step toward the development of sibiromycin analogs, we have cloned and localized the sibiromycin gene cluster to a 32.7-kb contiguous DNA region. Cluster boundaries tentatively assigned by comparative genomics were verified by gene replacement experiments. The sibiromycin gene cluster consisting of 26 open reading frames reveals a “modular” strategy in which the synthesis of the anthranilic and dihydropyrrole moieties is completed before assembly by the nonribosomal peptide synthetase enzymes. In addition, the gene cluster identified includes open reading frames encoding enzymes involved in sibirosamine biosynthesis, as well as regulatory and resistance proteins. Gene replacement and chemical complementation studies are reported to support the proposed biosynthetic pathway.Pyrrolo[1,4]benzodiazepines (PBDs) are a class of natural products found in actinomycetes (Fig. ​(Fig.1)1) and defined by a common pyrrolo[1,4]benzodiazepine ring system (41). They are sequence-selective DNA alkylating agents with significant antitumor properties (21). Once in the minor groove of DNA an aminal bond is formed between the electrophilic C-11 of a PBD and the exocyclic N-2 of a guanine base in a double-stranded DNA (20). Formation of the PBD-DNA complex causes very little distortion of the double-helical structure of DNA (20), and as such this complex is less readily repaired by DNA repair proteins compared to DNA adducts with other alkylating agents (4), significantly contributing to the potency of PBDs. Successful syntheses of PBD analogs have been reported, but synthetic procedures for the more chemically diverse PBDs are laborious and have modest yields (1, 44). In addition, a chemical synthesis for glycosylated PBDs has not yet been accomplished. Structure-activity relationship studies on the synthetically and naturally produced PBDs showed that the C-9 hydroxylation present in anthramycin is the source of the cardiotoxic properties of this compound (Fig. ​(Fig.1)1) (3, 17, 26, 38). These studies also showed that O glycosylation at C7 significantly enhanced DNA-binding affinity (Fig. ​(Fig.1)1) (17). The only known glycosylated PBDs are sibiromycin and sibanomicin produced by Streptosporangium sibiricum and Micromonospora sp., respectively, both containing a sibirosamine moiety (16, 35). Only the producer of sibiromycin is commercially available. A loose correlation between DNA binding affinity and cytotoxicity has been shown with naturally and synthetically produced PBDs (42). Sibiromycin has the highest DNA binding affinity and cytotoxicity with 50% inhibitory concentrations varying from 4 to 1.7 pM in leukemia, plasmacytoma, and ovarian cancer cell lines (42). Despite its potency, further testing of sibiromycin is precluded due to the presence of C-9 hydroxyl group responsible for the cardiotoxic properties. In order to generate analogs of glycosylated PBDs by combinatorial biosynthesis and to exploit their potency, we chose to characterize the sibiromycin gene cluster.Open in a separate windowFIG. 1.(A) Pyrrolobenzodiazepine common ring system. (B) Metabolic precursors and chemical structures of sibiromycin, anthramycin, tomaymycin, and lincomycin A.The metabolic precursors of the pyrrolobenzodiazepine ring of three PBDs (anthramycin, sibiromycin, and tomaymycin) were identified by feeding experiments to be l-tryptophan via the kynurenine pathway for the anthranilate moiety and l-tyrosine for the hydropyrrole moiety (11), suggesting a common biosynthetic pathway for these moieties in PBDs. The tyrosine-to-hydropyrrole transformation has been also identified by feeding studies in the biosynthesis of lincomycin, a lincosamide antibiotic (2) (Fig. ​(Fig.1B).1B). Despite the sequencing of the biosynthetic gene clusters of anthramycin (10) and lincomycin (37), limited functional assignment of open reading frames (ORFs) and elucidation of the biosynthetic pathways were reported partly due to the presence of several gene products with no significant similarities to functionally characterized enzymes. We reasoned that we could take advantage of the identification of the sibiromycin gene cluster not only to try to lay the groundwork for the production of analogs of sibiromycin by combinatorial biosynthesis but also to establish the biosynthetic pathways of the anthranilate and the hydropyrrole moieties by a comparative analysis of the PBDs and lincomycin gene clusters. To help in this analysis, we have also utilized the gene cluster of another PBD, tomaymycin, whose characterization is reported in the accompanying study (24a). The comparative analysis takes advantage of the presence of similarity and differences at the anthranilate and hydropyrrole moieties among these natural products (Fig. ​(Fig.1).1). For example, both anthramycin and sibiromycin contain C-8 methyl and C-9 hydroxyl substituents not present in tomaymycin. However, tomaymycin shares with sibiromycin a C-7 hydroxyl substituent. Therefore, homologous proteins involved in C-9 hydroxylation are expected to be present in the anthramycin and sibiromycin gene cluster but absent in the tomaymycin gene cluster. We applied a similar approach for the biosynthesis of the hydropyrrole moiety using also the lincomycin gene cluster.In the present study, we describe the cloning and sequencing of the sibiromycin gene cluster, the first biosynthetic gene cluster for a glycosylated PBD. Gene replacement experiments were used to confirm that the identified gene cluster was involved in sibiromycin biosynthesis, to define the boundaries of the sibiromycin gene cluster, and to elucidate the biosynthesis of the anthranilate moiety. Using the comparative approach, we were able not only to elucidate the sibiromycin biosynthetic pathway with a certain degree of confidence but also to assign ORFs in the anthramycin gene cluster contributing to the determination of the anthramycin biosynthetic pathway. The proposed biosynthetic pathway for the anthranilic moiety was supported by gene replacement and chemical complementation studies. The data reported here provide the basis for future studies on the enzymes involved in the biochemistry present in these pathways and for combinatorial biosynthetic experiments for the production of glycosylated PBDs.