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11.
Shelley A Caltharp Charmaine U Pira Noboru Mishima Erik N Youngdale David S McNeill Boleslaw H Liwnicz Kerby C Oberg 《BMC developmental biology》2007,7(1):32
Background
Nogo-A, a myelin-associated protein, inhibits neurite outgrowth and abates regeneration in the adult vertebrate central nervous system (CNS) and may play a role in maintaining neural pathways once established. However, the presence of Nogo-A during early CNS development is counterintuitive and hints at an additional role for Nogo-A beyond neurite inhibition. 相似文献12.
Zhao J Patwa TH Qiu W Shedden K Hinderer R Misek DE Anderson MA Simeone DM Lubman DM 《Journal of proteome research》2007,6(5):1864-1874
Pancreatic cancer is the fourth leading cause of cancer-related death in the United States, with a 5-year survival rate of less than 4%. Effective early detection and screening are currently not available, and tumors are typically diagnosed at a late stage, frequently after metastasis. Existing clinical markers of pancreatic cancer lack specificity, as they are also found in inflammatory diseases of the pancreas and biliary tract. In the work described here, naturally occurring glycoproteins were enriched by using lectin affinity chromatography and then further resolved by nonporous reversed-phase chromatography. Glycoprotein microarrays were then printed and probed with a variety of lectins to screen glycosylation patterns in sera from normal, chronic pancreatitis, and pancreatic cancer patients. Ten normal, 8 chronic pancreatitis, and 6 pancreatic cancer sera were investigated. Data from the glycoprotein microarrays were analyzed using bioinformatics approaches including principal component analysis (PCA) and hierarchical clustering (HC). Both normal and chronic pancreatitis sera were found to cluster close together, although in two distinct groups, whereas pancreatic cancer sera were significantly different from the other two groups. Both sialylation and fucosylation increased as a function of cancer on several proteins including Hemopexin, Kininogen-1, Antithrombin-III, and Haptoglobin-related protein, whereas decreased sialylation was detected on plasma protease C1 inhibitor. Target alterations on glycosylations were verified by lectin blotting experiments and peptide mapping experiments using microLC-ESI-TOF. These altered glycan structures may have utility for the differential diagnosis of pancreatic cancer and chronic pancreatitis and identify critical differences between biological samples from patients with different clinical conditions. 相似文献
13.
Predators affect prey and their resources by changing the density and traits (e.g. morphology and behavior) of those prey. Ecological studies and models of community dynamics, however, typically only incorporate how changes in prey densities, rather than their traits, affect community dynamics. In a recent meta-analysis, Preisser et al. show that trait effects are as large, if not larger than density effects. This strongly suggests that trait effects should be integrated into empirical and theoretical studies. 相似文献
14.
Ovarian cancer is a morphologically and biologically heterogeneous disease. The identification of type-specific protein markers for ovarian cancer would provide the basis for more tailored treatments, as well as clues for understanding the molecular mechanisms governing cancer progression. In the present study, we used a novel approach to classify 24 ovarian cancer tissue samples based on the proteomic pattern of each sample. The method involved fractionation according to pI using chromatofocusing with analytical columns in the first dimension followed by separation of the proteins in each pI fraction using nonporous RP HPLC, which was coupled to an ESI-TOF mass analyzer for molecular weight (MW) analysis. A 2-D mass map of the protein content of each type of ovarian cancer tissue samples based upon pI versus intact protein MW was generated. Using this method, the clear cell and serous ovarian carcinoma samples were histologically distinguished by principal component analysis and clustering analysis based on their protein expression profiles and subtype-specific biomarker candidates of ovarian cancers were identified, which could be further investigated for future clinical study. 相似文献
15.
Wang Y Wu R Cho KR Shedden KA Barder TJ Lubman DM 《Molecular & cellular proteomics : MCP》2006,5(1):43-52
A two-dimensional liquid mapping method was used to map the protein expression of eight ovarian serous carcinoma cell lines and three immortalized ovarian surface epithelial cell lines. Maps were produced using pI as the separation parameter in the first dimension and hydrophobicity based upon reversed-phase HPLC separation in the second dimension. The method can be reproducibly used to produce protein expression maps over a pH range from 4.0 to 8.5. A dynamic programming method was used to correct for minor shifts in peaks during the HPLC gradient between sample runs. The resulting corrected maps can then be compared using hierarchical clustering to produce dendrograms indicating the relationship between different cell lines. It was found that several of the ovarian surface epithelial cell lines clustered together, whereas specific groups of serous carcinoma cell lines clustered with each other. Although there is limited information on the current biology of these cell lines, it was shown that the protein expression of certain cell lines is closely related to each other. Other cell lines, including one ovarian clear cell carcinoma cell line, two endometrioid carcinoma cell lines, and three breast epithelial cell lines, were also mapped for comparison to show that their protein profiles cluster differently than the serous samples and to study how they cluster relative to each other. In addition, comparisons can be made between proteins differentially expressed between cell lines that may serve as markers of ovarian serous carcinomas. The automation of the method allows reproducible comparison of many samples, and the use of differential analysis limits the number of proteins that might require further analysis by mass spectrometry techniques. 相似文献
16.
The cAMP receptor protein (CRP) of Escherichia coli undergoes a conformational change in response to cAMP binding that allows it to bind specific DNA sequences. Using an in vivo screening method following the simultaneous randomization of the codons at positions 127 and 128 (two C-helix residues of the protein interacting with cAMP), we have isolated a series of novel constitutively active CRP variants. Sequence analysis showed that this group of variants commonly possesses leucine or methionine at position 127 with a beta-branched amino acid at position 128. One specific variant, T127L/S128I CRP, showed extremely high cAMP-independent DNA binding affinity comparable with that of cAMP-bound wild-type CRP. Further biochemical analysis of this variant and others revealed that Leu(127) and Ile(128) have different roles in stabilizing the active conformation of CRP in the absence of cAMP. Leu(127) contributes to an improved leucine zipper at the dimer interface, leading to an altered intersubunit interaction in the C-helix region. In contrast, Ile(128) stabilizes the proper position of the beta4/beta5 loop by functionally communicating with Leu(61). By analogy, the results suggest two direct local effects of cAMP binding in the course of activating wild-type CRP: (i) C-helix repositioning through direct interaction with Thr(127) and Ser(128) and (ii) the concomitant reorientation of the beta4/beta5 loop. Finally, we also report that elevated expression of T127L/S128I CRP markedly perturbed E. coli growth even in the absence of cAMP, which suggests why comparably active variants have not been described previously. 相似文献
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Tina K. Kerby William W. L. Cheung Georg H. Engelhard 《Reviews in Fish Biology and Fisheries》2012,22(3):621-634
This study compiles 100?years of North Sea demersal landings, focusing on the UK, and relating them to historical events and political, technological and economical drivers that influenced demersal fisheries. In the early twentieth century, aided by technological advances, the UK, and in particular England, had unchallenged dominance in North Sea demersal fisheries. Since then, the two World Wars and other political developments have had a great impact on British fisheries. Between the 1920s and 1960s, English ports shifted their interests away from the North Sea towards highly profitable distant waters, whereas the Scottish fleet relied less on these fishing grounds. Meanwhile, especially in the 1960s, other European countries expanded their fisheries, undermining Britain??s lead. In the 1970s and 1980s, Scotland benefitted from mainly fishing in the North Sea. Firstly, the assertion of 200 nautical miles Exclusive Economic Zones made the distant waters inaccessible to English fleets at a time when England??s fisheries were highly dependent on them. Secondly, the relatively minor activity in the North Sea by the English compared to the Scottish fleets coincided with the establishment of the Common Fisheries Policy. This had implications when total allowable catches were first implemented because quota allocations to countries were based on their recent catches from the North Sea. Thus, after the loss of fishing opportunities in distant waters, the North Sea once more became an important fishing ground for Britain, just as in the early twentieth century, however, the emphasis of fisheries had shifted from England to Scotland. 相似文献
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