Genetic diversity of the natural populations of Arabidopsis thaliana in China

Although extensive studies have been conducted on the genetic structure of Arabidopsis thaliana (A. thaliana) populations worldwide, the populations from China have never been studied. In this study, we collected 560 individuals from 19 natural populations of A. thaliana distributed in East China along the lower reaches of the Yangtze River, and two populations from northwest China (Xinjiang Province). We adopted two kinds of molecular marker, inter-simple sequence repeats (ISSRs) and random amplified polymorphic DNA (RAPDs) to investigate the genetic diversity within and among populations, and the correlation between the genetic and geographic distances. Thirteen ISSR primers produced 165 polymorphic bands (PPB) (96%) and 11 RAPD primers produced 162 polymorphic bands (98%) in about 560 individuals. The two marker systems generated similar patterns of genetic diversity in these natural populations. The AMOVA analysis indicated about 42-45% of the total genetic variation existed within populations, and found possible geographic structure. The Mantel test revealed a significant correlation between the geographic distance and the genetic distance of these populations in general. A close genetic relationship was found among four populations in the Jiangxi Province, and these always appeared clustered together as a monophyletic group in unweighted pair-group method with arithmetic averages dendrograms based on both ISSR and RAPD data sets. Based on the observation of recolonization and extinction of naturally distributed populations of A. thaliana, and the pattern of their genetic differentiation, the distribution of this species in China might be a result of natural dispersal under the strong influence of human activity.     

MiR-203 Suppresses ZNF217 Upregulation in Colorectal Cancer and Its Oncogenicity

Zinc finger protein 217 (ZNF217) is essential for cell proliferation and has been implicated in tumorigenesis. However, its expression and exact roles in colorectal cancer (CRC) remain unclear. In this study, we demonstrated that ZNF217 expression was aberrantly upregulated in CRC tissues and associated with poor overall survival of CRC patients. In addition, we found that ZNF217 was a putative target of microRNA (miR)-203 using bioinformatics analysis and confirmed that using luciferase reporter assay. Moreover, in vitro knockdown of ZNF217 or enforced expression of miR-203 attenuated CRC cell proliferation, invasion and migration. Furthermore, combined treatment of ZNF217 siRNA and miR-203 exhibited synergistic inhibitory effects. Taken together, our results provide new evidences that ZNF217 has an oncogenic role in CRC and is regulated by miR-203, and open up the possibility of ZNF217- and miR-203-targeted therapy for CRC.     

Systems biology analysis reveals new insights into invasive lung cancer

Background

Adenocarcinoma in situ (AIS) is a pre-invasive lesion in the lung and a subtype of lung adenocarcinoma. The patients with AIS can be cured by resecting the lesion completely. In contrast, the patients with invasive lung adenocarcinoma have very poor 5-year survival rate. AIS can develop into invasive lung adenocarcinoma. The investigation and comparison of AIS and invasive lung adenocarcinoma at the genomic level can deepen our understanding of the mechanisms underlying lung cancer development.

Results

In this study, we identified 61 lung adenocarcinoma (LUAD) invasive-specific differentially expressed genes, including nine long non-coding RNAs (lncRNAs) based on RNA sequencing techniques (RNA-seq) data from normal, AIS, and invasive tissue samples. These genes displayed concordant differential expression (DE) patterns in the independent stage III LUAD tissues obtained from The Cancer Genome Atlas (TCGA) RNA-seq dataset. For individual invasive-specific genes, we constructed subnetworks using the Genetic Algorithm (GA) based on protein-protein interactions, protein-DNA interactions and lncRNA regulations. A total of 19 core subnetworks that consisted of invasive-specific genes and at least one putative lung cancer driver gene were identified by our study. Functional analysis of the core subnetworks revealed their enrichment in known pathways and biological progresses responsible for tumor growth and invasion, including the VEGF signaling pathway and the negative regulation of cell growth.

Conclusions

Our comparison analysis of invasive cases, normal and AIS uncovered critical genes that involved in the LUAD invasion progression. Furthermore, the GA-based network method revealed gene clusters that may function in the pathways contributing to tumor invasion. The interactions between differentially expressed genes and putative driver genes identified through the network analysis can offer new targets for preventing the cancer invasion and potentially increase the survival rate for cancer patients.

     

二种淡水微囊藻rDNA16S-23S基因间隔区的序列测定与分析

本研究采用ＰＣＲ及序列测定的方法,对我国淡水铜绿微囊藻有毒株和另一低毒的种类惠氏微囊藻（Ｍ５７４）ｒＤＮＡ１６Ｓ－２３Ｓ基因间隔区进行了序列的测定和分析,结果表明：ｒＤＮＡ１６Ｓ－２３Ｓ基因间隔区可以作为一个精细且稳定的指标,用一微囊藻的分类和鉴定。并从分子水平提出了同囊藻与惠氏微囊藻在种系有较近缘的关系,本文首次对微落属ＭｉｃｒｏｃｙｓｔｉｓｒＤＮＡ基因间隔区全序列作了报道。为微囊藻属的鉴定及系     

Efficacy of postoperative adjuvant transfusion of cytokine-induced killer cells combined with chemotherapy in patients with colorectal cancer

Purpose

To assess the activity and safety of postoperative adjuvant immunotherapy with transfusion of cytokine-induced killer (CIK) cells combined with chemotherapy in patients with colorectal cancer.

Methods

We retrospectively studied 96 consecutive patients with colorectal cancer who were treated with resection between January 2010 and December 2012 as well as adjuvant chemotherapy. Twenty-one of these patients accepted at least 1 cycle of CIK cell transfusion for immunotherapy (CIK group). Disease free survival (DFS), immune cells and treatment related side effects were assessed. The patients were followed up until May 2013.

Results

By the end of follow-up, 10 patients (10.42 %) had died. Eighteen patients (18.75 %) had withdrawn. All the patients in the CIK group are still alive, and only 1 patient had withdrawn. Patients in the CIK group had significantly longer DFS than those in the control group [HR = 0.28, 95 % CI (0.09, 0.91), p = 0.034]. The 2-year DFS rates of patients in the CIK group and the control group were 59.65 ± 24.80 % and 29.35 ± 6.39 %, respectively. The CD4⁺/CD8⁺ ratios were significantly lower during the period of chemotherapy than those before chemotherapy (p = 0.0038), while the ratios were significantly higher during the period of CIK cell transfusion than those before CIK therapy (p = 0.0484). There were no immediate adverse reactions to the CIK cell transfusions.

Conclusion

Adjuvant transfusion of CIK cells prolongs DFS in patients with colorectal cancer.     

秦巴山区野生多鳞白甲鱼的营养成分分析与评价

选取不同体质量的秦巴山区野生多鳞白甲鱼(Onychostoma macrolepis)20尾,对其肌肉中的常规营养成分、氨基酸和脂肪酸以及微量元素硒的含量进行检测和分析,以期对多鳞白甲鱼的营养价值进行评估。研究结果显示:秦巴山区野生多鳞白甲鱼的粗蛋白和粗脂肪含量分别为17. 37%和1. 76%。谷氨酸含量最高,天冬氨酸和赖氨酸次之,蛋氨酸含量最低,鲜味氨基酸和必需氨基酸分别占氨基酸总量的38. 46%和37. 10%,氨基酸评价指数(EAAI)为77. 00%。野生多鳞白甲鱼二十二碳六烯酸(DHA)和二十碳五烯酸(EPA)的总量为6. 32%,饱和脂肪酸(SFA)和不饱和脂肪酸的比值约为1∶1。肌肉中硒的含量为(0. 058±0. 017)mg/kg。研究结果表明,秦巴山区野生多鳞白甲鱼的营养价值较高,硒含量适中,可以在当地进行进一步产业化开发和推广。     

生长素对拟南芥叶片发育调控的研究进展

叶片(包括子叶)是茎端分生组织产生的第一类侧生器官, 在植物发育中具有重要地位。早期叶片发育包括三个主要过程: 叶原基的起始, 叶片腹背性的建立和叶片的延展。大量证据表明叶片发育受到体内遗传机制和体外环境因子的双重调节。植物激素, 尤其是生长素在协调体内外调节机制中起着不可或缺的作用。生长素的稳态调控、极性运输和信号转导影响叶片发育的全过程。本文着重介绍生长素在叶片生长发育和形态建成中的调控作用, 试图了解复杂叶片发育调控网络。     

Changes in vegetation and soil properties following 6 years of enclosure in riparian corridors

河岸带是维持生物多样性的重要生态系统之一。然而,由于过度放牧引起的植被消耗和过度开垦等人类活动的干扰,河岸带植被多样性和植被盖度受到严重的破坏,甚至威胁了河道的稳定性。围栏封育在退化草地生态系统修复中被广泛应用,但对退化河岸带植被群落和土壤性质的影响尚不明确。本研究的目的旨在明确围封的实施是否会促进河岸带植被群落的物种组成、物种丰富度和物种多样性恢复,土壤氧分如何随围封年限的增加而变化。辽河干流自2012年起被围栏封育管理,本研究在辽河干流河岸带沿岸设置了20个草本群落长期观测样地,记录了2012–2017年样地中植被高度、盖度和个体数量等参数用于物种丰富度和物种多样性的统计分析。同时,分别测定了2012年和2017年植被群落土壤氧分含量,验证了植被群落和土壤氧分对围封的反馈,研究了2012–2017年辽河干流河岸带的围栏封育对物种多样性和土壤氧分的影响。结果表明,随着围封年限的增加,辽河干流河岸带草本群落植被丰富度和多样性显著增加。物种组成方面,菊科植物的优势度显著增加,禾本科植物优势度显著下降。围封后植被群落的恢复和禁止耕作,加速了土壤中磷和钾的消耗,表现为显著降低,土壤有机质含量对围封的响应表现的相对滞后,并没有显著变化。综上所述,本研究为河岸带植被群落物种多样性、物种组成对围封的响应提供了新的见解。     

In vivo effects of adenosine A1 receptor agonist and antagonist on neuronal and astrocytic intermediary metabolism studied with ex vivo 13C NMR spectroscopy

Adenosine is a neuromodulator, and it has been suggested that cerebral acetate metabolism induces adenosine formation. In the present study the effects that acetate has on cerebral intermediary metabolism, compared with those of glucose, were studied using the adenosine A1 receptor agonist 2-chloro-N6-cyclopentyladenosine (CCPA) and antagonist 8-cyclopentyl-1,3-dipropylxanthine (DPCPX). Fasted rats received an intravenous injection of CCPA, DPCPX, or vehicle. Fifteen minutes later either [1,2-13C]acetate or [1-13C]glucose was given intraperitoneally; after another 30 min the rats were decapitated. Cortical extracts were analyzed with 13C NMR spectroscopy and HPLC analysis. DPCPX affected neuronal and astrocytic metabolism. De novo synthesis of GABA from neuronal and astrocytic precursors was significantly reduced. De novo syntheses of glutamate and aspartate were at control levels, but their degradation was significantly elevated. In glutamine the anaplerotic activity and the amount of label in the position representing the second turn in the tricarboxylic acid cycle were significantly increased, suggesting elevated metabolic activity in astrocytes. CCPA did not influence GABA, aspartate, or glutamine synthesis. In glutamate the contribution from the astrocytic anaplerotic pathway was significantly decreased. In the present study the findings in the [1,2-13C]acetate and [1-13C]glucose control, CCPA, and DPCPX groups were complementary, and no adenosine A1 agonist effects arising from cerebral acetate metabolism were detected.