Site Variation in Littoral Periphyton Populations: Correlation and Regression with Environmental Factors

Over a six month period, littoral periphyton communities on vertically oriented glass slides were quantitatively sampled from four stations in Elk Lake, British Columbia. Correlation and multiple regression analyses were employed to assess the temporal interrelationships between 15 environmental variables, concurrently measured, and the periphyton populations, expressed as total cell counts and species diversity, for the complete data set of each station. At all stations there was a statistically significant increase in total cell populations with increasing length of slide exposure; positive correlations also occurred with pH, temperature, nitrite, nitrate and copper, while negative ones occurred with oxygen, orthophosphate and hardness (magnesium and total). At all but one station there was a significant decrease in species diversity with increasing slide exposure duration, a decrease attributed to the simultaneous increase in standing crop resulting in intensified competition for diminishing substrate area suitable for cell colonization. Multiple stepwise regression analyses demonstrated that greater than 80% of the variation in periphyton total cells at all four stations could be reliably predicted or described in terms of length of slide exposure, phosphate (ortho and total), and hardness (calcium and total). On the other hand, exposure duration and total cell populations were the most important variables associated with changes in species diversity at three of the four stations. In general, correlations and regressions between standing crop and environmental variables were more statistically reliable and consistent between stations than comparable analyses with species diversity. Use of multiple regression and correlation disclosed the importance of small, non statistically significant variation in ecologically relevant variables and permitted objective comparison of stations.     

Species Diversity of Periphyton Communities in the Littoral of a Temperate Lake

Species diversity of littoral periphyton sampled from Elk Lake (B. C., Canada) was dependent on station location and period of substrate exposure. Site differences were not statistically related to physico-chemical variables. However, diversity was negatively correlated with age of the communities and standing crop, and appeared to be associated with biological interaction or competition for available substrate surface. Further investigation revealed that the Shannon-Weaver index, as commonly applied, was inappropriate for data summarization since it reflected only the changes in evenness of the most abundant species. Components of the diversity index, as illustrated by the periphyton, were discussed.     

Modelling to infer the role of animals in gambiense human African trypanosomiasis transmission and elimination in the DRC

Gambiense human African trypanosomiasis (gHAT) has been targeted for elimination of transmission (EoT) to humans by 2030. Whilst this ambitious goal is rapidly approaching, there remain fundamental questions about the presence of non-human animal transmission cycles and their potential role in slowing progress towards, or even preventing, EoT. In this study we focus on the country with the most gHAT disease burden, the Democratic Republic of Congo (DRC), and use mathematical modelling to assess whether animals may contribute to transmission in specific regions, and if so, how their presence could impact the likelihood and timing of EoT.By fitting two model variants—one with, and one without animal transmission—to the human case data from 2000–2016 we estimate model parameters for 158 endemic health zones of the DRC. We evaluate the statistical support for each model variant in each health zone and infer the contribution of animals to overall transmission and how this could impact predicted time to EoT.We conclude that there are 24/158 health zones where there is substantial to decisive statistical support for some animal transmission. However—even in these regions—we estimate that animals would be extremely unlikely to maintain transmission on their own. Animal transmission could hamper progress towards EoT in some settings, with projections under continuing interventions indicating that the number of health zones expected to achieve EoT by 2030 reduces from 68/158 to 61/158 if animal transmission is included in the model. With supplementary vector control (at a modest 60% tsetse reduction) added to medical screening and treatment interventions, the predicted number of health zones meeting the goal increases to 147/158 for the model including animal transmission. This is due to the impact of vector reduction on transmission to and from all hosts.     

Fed-batch culture technology

The use of fed-batch procedures offers distinct advantages over other modes of operation of bioreactors, and is a widely researched technique. These advantages are discussed; some uses of fed-batch procedures and the associated methods of modelling and control are reviewed.     

天蚕素AD在毕赤酵母中的多拷贝整合表达及表达条件优化

【背景】天蚕素抗菌肽是目前研究最清楚、效果最显著的抗菌肽,实现工业化生产为其在农业、养殖业中的应用奠定了基础。【目的】获得一株高效生产天蚕素AD的基因工程菌株。【方法】构建重组载体pGAPZαA-CAD通过电击转化至PichiapastorisX33中,表达天蚕素AD基因并获得X33/GCAD菌株;构建重组载体pUCGAP-CAD导入至X33/GCAD菌株中。pGAPZαA-CAD是以博来霉素为抗性筛选标签被整合到P. pastoris X33的GAPDH启动子区域,pUCGAP-CAD是以遗传霉素为抗性筛选标签被整合到P. pastoris X33的非翻译rDNA区域,最终获得一株高效表达天蚕素AD的酵母菌株X33/GUCAD。【结果】通过质谱分析鉴定X33/GUCAD表达的抑菌物质为天蚕素AD,通过发酵条件的优化,表明X33/GUCAD菌株在以甘油为碳源和以蛋白胨、酵母提取物为有机氮源的情况下具有较强表达天蚕素AD的能力。【结论】较高的拷贝数更有利于提高天蚕素AD的产量,此工程菌株在后期发酵过程中稳定性较好,适于工业化生产。     

Trade-offs in the genetic control of functional and nutritional quality traits in UK winter wheat

A complex network of trade-offs exists between wheat quality and nutritional traits. We investigated the correlated relationships among several milling and baking traits as well as mineral density in refined white and whole grain flour. Our aim was to determine their pleiotropic genetic control in a multi-parent population over two trial years with direct application to practical breeding. Co-location of major quantitative trait loci (QTL) and principal component based multi-trait QTL mapping increased the power to detect QTL and revealed pleiotropic effects explaining many complementary and antagonistic trait relationships. High molecular weight glutenin subunit genes explained much of the heritable variation in important dough rheology traits, although additional QTL were detected. Several QTL, including one linked to the TaGW2 gene, controlled grain size and increased flour extraction rate. The semi-dwarf Rht-D1b allele had a positive effect on Hagberg falling number, but reduced grain size, specific weight, grain protein content and flour water absorption. Mineral nutrient concentrations were lower in Rht-D1b lines for many elements, in wholemeal and white flour, but potassium concentration was higher in Rht-D1b lines. The presence of awns increased calcium content without decreasing extraction rate, despite the negative correlation between these traits. QTL were also found that affect the relative concentrations of key mineral nutrients compared to phosphorus which may help increase bioavailability without associated anti-nutritional effects of phytic acid. Taken together these results demonstrate the potential for marker-based selection to optimise trait trade-offs and enhance wheat nutritional value by considering pleiotropic genetic effects across multiple traits.Subject terms: Plant breeding, Quantitative trait, Genetic variation     

Antagonism of microRNA-122 in mice by systemically administered LNA-antimiR leads to up-regulation of a large set of predicted target mRNAs in the liver

MicroRNA-122 (miR-122) is an abundant liver-specific miRNA, implicated in fatty acid and cholesterol metabolism as well as hepatitis C viral replication. Here, we report that a systemically administered 16-nt, unconjugated LNA (locked nucleic acid)-antimiR oligonucleotide complementary to the 5′ end of miR-122 leads to specific, dose-dependent silencing of miR-122 and shows no hepatotoxicity in mice. Antagonism of miR-122 is due to formation of stable heteroduplexes between the LNA-antimiR and miR-122 as detected by northern analysis. Fluorescence in situ hybridization demonstrated uptake of the LNA-antimiR in mouse liver cells, which was accompanied by markedly reduced hybridization signals for mature miR-122 in treated mice. Functional antagonism of miR-122 was inferred from a low cholesterol phenotype and de-repression within 24 h of 199 liver mRNAs showing significant enrichment for miR-122 seed matches in their 3′ UTRs. Expression profiling extended to 3 weeks after the last LNA-antimiR dose revealed that most of the changes in liver gene expression were normalized to saline control levels coinciding with normalized miR-122 and plasma cholesterol levels. Combined, these data suggest that miRNA antagonists comprised of LNA are valuable tools for identifying miRNA targets in vivo and for studying the biological role of miRNAs and miRNA-associated gene-regulatory networks in a physiological context.