S‐adenosyl‐l‐methionine usage during climacteric ripening of tomato in relation to ethylene and polyamine biosynthesis and transmethylation capacity

S‐adenosyl‐l ‐methionine (SAM) is the major methyl donor in cells and it is also used for the biosynthesis of polyamines and the plant hormone ethylene. During climacteric ripening of tomato (Solanum lycopersicum ‘Bonaparte’), ethylene production rises considerably which makes it an ideal object to study SAM involvement. We examined in ripening fruit how a 1‐MCP treatment affects SAM usage by the three major SAM‐associated pathways. The 1‐MCP treatment inhibited autocatalytic ethylene production but did not affect SAM levels. We also observed that 1‐(malonylamino)cyclopropane‐1‐carboxylic acid formation during ripening is ethylene dependent. SAM decarboxylase expression was also found to be upregulated by ethylene. Nonetheless polyamine content was higher in 1‐MCP‐treated fruit. This leads to the conclusion that the ethylene and polyamine pathway can operate simultaneously. We also observed a higher methylation capacity in 1‐MCP‐treated fruit. During fruit ripening substantial methylation reactions occur which are gradually inhibited by the methylation product S‐adenosyl‐l ‐homocysteine (SAH). SAH accumulation is caused by a drop in adenosine kinase expression, which is not observed in 1‐MCP‐treated fruit. We can conclude that tomato fruit possesses the capability to simultaneously consume SAM during ripening to ensure a high rate of ethylene and polyamine production and transmethylation reactions. SAM usage during ripening requires a complex cellular regulation mechanism in order to control SAM levels.     

Abscisic acid in soils: What is its function and which factors and mechanisms influence its concentration?

Abscisic acid (ABA) was detected in aqueous extracts of a range of different soils, beneath a range of crops, pasture and forest species. Assuming that all the ABA is dissolved in the soil solution concentrations ranged from 0.6–2.8 nM. This is in the range which computer simulations predict is required in soils in order to prevent ABA release from the root hair zones of plant roots. The concentration of ABA in the soil solution was highest in acid soils and in soils with reduced moisture, and was lowest in moist, neutral and moderately alkaline soils. ABA in the soil solution of maize fields increased during the vegetative period. After incubation in soil for 72 h, radioactive ABA was degraded by 30–40%. Tetcyclacis, an inhibitor of the oxidative breakdown of ABA, completely prevented the degradation of ABA in the soil solution. Acid conditions and high salt concentrations significantly retarded ABA breakdown.     

Plant cyclins: a unified nomenclature for plant A-, B- and D-type cyclins based on sequence organization

The comparative analysis of a large number of plant cyclins of the A/B family has recently revealed that plants possess two distinct B-type groups and three distinct A-type groups of cyclins [1]. Despite earlier uncertainties, this large-scale comparative analysis has allowed an unequivocal definition of plant cyclins into either A or B classes. We present here the most important results obtained in this study, and extend them to the case of plant D-type cyclins, in which three groups are identified. For each of the plant cyclin groups, consensus sequences have been established and a new, rational, plant-wide naming system is proposed in accordance with the guidelines of the Commission on Plant Gene Nomenclature. This nomenclature is based on the animal system indicating cyclin classes by an upper-case roman letter, and distinct groups within these classes by an arabic numeral suffix. The naming of plant cyclin classes is chosen to indicate homology to their closest animal class. The revised nomenclature of all described plant cyclins is presented, with their classification into groups CycA1, CycA2, CycA3, CycB1, CycB2, CycD1, CycD2 and CycD3.     

Effect of activation of viral receptors on the gelatinases MMP-2 and MMP-9 in human mesothelial cells

BackgroundExtracellular matrix (ECM) not only provides molecular and spatial information that influence cell proliferation, differentiation and apoptosis but also has the potential to bind and present or release cytokines and cytotactic factors. Synthesis and degradation of extracellular matrix components are balanced by matrix metalloproteinases (MMP) and their inhibitors. In the pericardium as well as in the pleural and peritoneal cavities a multitude of clinically relevant disease states ranging from inflammation to fibrosis and tumor invasion result from altered regulation of MMP activity and are known to be associated with viral disease.MethodsTherefore, the functional linkage between viral receptors of the innate immune system, the toll-like receptors (TLR), and control of MMP activity was exemplarily analyzed by stimulating human mesothelial cells with poly (I:C) RNA.ResultsWe hereby show that human mesothelial cells (MC) express TLR3. After stimulation of MC with the cytokines TNF-α, IL-1β and IFN-γ alone or in combination to simulate a proinflammatory milieu as would occur during immune-mediated inflammatory disease, an upregulation of TLR3 is seen. Furthermore, a selectively TLR3 mediated, time- and dose-dependent upregulation of MMP-9 and TIMP-1 is found, whereas MMP-2 expression is not significantly affected by TLR3 stimulation.ConclusionsWith these results we provide evidence for a mechanism by which infectious agents can mediate processes of the final common path of inflammation as fibrosis via regulation of MMP and TIMP.     

Evolutionary plasticity of SH3 domain binding by Nef proteins of the HIV-1/SIVcpz lentiviral lineage

The accessory protein Nef of human and simian immunodeficiency viruses (HIV and SIV) is an important pathogenicity factor known to interact with cellular protein kinases and other signaling proteins. A canonical SH3 domain binding motif in Nef is required for most of these interactions. For example, HIV-1 Nef activates the tyrosine kinase Hck by tightly binding to its SH3 domain. An archetypal contact between a negatively charged SH3 residue and a highly conserved arginine in Nef (Arg77) plays a key role here. Combining structural analyses with functional assays, we here show that Nef proteins have also developed a distinct structural strategy—termed the "R-clamp”—that favors the formation of this salt bridge via buttressing Arg77. Comparison of evolutionarily diverse Nef proteins revealed that several distinct R-clamps have evolved that are functionally equivalent but differ in the side chain compositions of Nef residues 83 and 120. Whereas a similar R-clamp design is shared by Nef proteins of HIV-1 groups M, O, and P, as well as SIVgor, the Nef proteins of SIV from the Eastern chimpanzee subspecies (SIVcpz^P.t.s.) exclusively utilize another type of R-clamp. By contrast, SIV of Central chimpanzees (SIVcpz^P.t.t.) and HIV-1 group N strains show more heterogenous R-clamp design principles, including a non-functional evolutionary intermediate of the aforementioned two classes. These data add to our understanding of the structural basis of SH3 binding and kinase deregulation by Nef, and provide an interesting example of primate lentiviral protein evolution.     

Plasmodesmatal frequency and radial translocation rates in ray cells of poplar (Populus x canadensis Moench ‘robusta’)

The minimum radial translocation rate of sugars has been determined from the starchaccumulation rate for the wood rays of Populus x canadensis Moench robusta, and related to ultrastructural peculiarities of the cell walls to be passed. The minimum radial flux or flow of sugars through the tangential walls, the pit fields, and per plasmodesma was 80.7 pmol · cm^-2 · s^-1, 400 to 800 pmol · cm^-2 · s^-1, and 1.0 to 1.7 · 10^-7 pmol · plasmodesma^-1 · s^-1, respectively. These values exclude a transmembrane flux mechanism and indicate that the radial translocation in this tissue must proceed via plasmodesmata. In the isolation cells of the ray center we found 39 plasmodesmata per m² of pit field, 8.0 per m² of tangential wall, and 1.98% of the wall occupied by plasmodesmata. Cells of the ray margins show plasmodesmata on only 1.16% of their tangential wall area and thus appear to be slightly inferior for radial translocation. As judged from both the observed plasmodesmatal frequencies and the translocation rates, the ray parenchyma cells are comparable to cells specialized in short-distance translocation.Abbreviations CCR contact-cell row - IC isolation cell - ICR isolation-cell row     

Comparative potency of different plant growth retardants in cell cultures and intact plants

A comparison of the efficiency of a broad range of plant growth retardants on cell division growth of 13 cell suspension cultures is presented. The results show that (1) the new plant bioregulator tetcyclacis (NDA) is the compound with the highest activity in inhibiting cell division of all cultures tested, and (2) cell cultures react species-specifically to various compounds. Significant correlations between the results from suspension cultures and intact seedlings of the same plant species demonstrate the usefulness of cell cultures for identifying substances with a growth-regulating potency. Futhermore, the usefulness of cell cultures for establishing structure-activity relationships was shown with structural analogues of chlormequat and mepiquat chloride.     

Localization of a storage protein in the wood ray parenchyma cells of Taxodium distichum (L.) L. C. Rich. by immunogold labeling

Summary Ultrastructural investigations showed the occurrence of electron-dense intravacuolar aggregations in wood ray cells of Taxodium distichum (L.) L. C. Rich, during the dormant season. Such aggregations were missing in summer. By SDS-PAGE of the crude protein extract of Taxodium, a prominent protein of about 35 kDa was detected before budbreak. This protein disappeared at the time when the new shoots had fully grown out. An antibody was raised against this storage protein. In the immunoblot the antibody reacted specifically with the 35 kDa protein. At the electron-microscope level, by immunogold labeling, the electron-dense intravacuolar aggregations were identified as the specific storage sites for the 35 kDa protein. Thus, these vacuoles proved to be protein storing vacuoles.