Pattern formation in the Drosophila embryo

Three plausible hypotheses about developmental commitments in the Drosophila embryo propose that: (1) a micromosaic of localized determinants in the egg trigger somatic commitments; (2) monotonic anterior-posterior and dorsal-ventral gradients in the egg specify positions by a series of threshold values; (3) sequential subdivision of the early embryo into 'anterior' or 'posterior' 'middle' or 'end', 'dorsal' or 'ventral', 'odd' or 'even' compartmental domains encodes the somatic commitment in each region in a combinatorial epigenetic code. Evidence in favour of such a combinatorial code includes its capacity to account for major features of transdetermination and for many single and coordinated homoeotic transformations. In particular, both these metaplasias often cause transformations between ectodermal tissues such as antenna and genitalia, whose anlagen lie far apart on the blastoderm fate map. This phenomenon is not naturally explained by monotonic gradient models. In contrast, not only transformation between distant regions of the fate map, but also the observed geometries of compartmental boundaries on the wing, and probable ones in the early embryo, are naturally explained by reaction-diffusion models. These systems form a discrete succession of differently shaped monotonic and nonmonotonic eigenfunction gradient patterns of the same morphogens, as the tissue containing the chemical system changes in size and shape, or in other parameters. The successive mirror symmetries in non-monotonic gradients predict that distant regions of the embryo make similar developmental commitments, and also predict specific classes of pattern mutants forming mirror symmetric structures along the embryo on a variety of length scales. Finally, reaction diffusion systems spontaneously generate transverse gradients of the underlying chemicals when more than one eigenfunction is amplified at once, and therefore specify two-dimensional positional information within domains. Although it is attractive, no feature of the combinatorial code hypothesis is verified. Current data relating to whether the sequential formation of compartmental boundaries actually reflects the commitment of the two isolated 'polyclones' to alternative fates, whether any genes act continuously to maintain disc commitments, and whether homoeotic mutants actually 'switch' disc determined states, are assessed.     

Isolation and partial characterization of two populations of secretory granules from rat parotid glands

Summary A method is described for the isolation of two populations of secretory granules from rat parotid glands utilizing differences in their sedimentation characteristics. The granule preparations were analyzed for homogeneity by electron microscopy and chemical analyses. The soluble contents of both types of granules were obtained by hypotonic lysis, and the proteins compared by SDS-PAGE and ion exchange-gel filtration chromatography. Both populations of secretory granules appear to have the same protein composition as that of the parotid saliva. The secretory granules with the smaller apparent buoyant density became labelled with radioactive leucine earlier than the heavier granules when a pulse of this amino acid was supplied to a gland slice system. The lighter granules appear to represent an earlier stage in maturation.     

Assessment of the Mulder and Van Doorn kinetic procedure and rapid centrifugal analysis of UDP-glucuronosyltransferase activities

The optimal experimental conditions of the enzyme assay described by Mulder and Van Doorn (1975, Biochem J. 151, 131-140) for the measurement of UDP-glucuronosyltransferase activities were tested towards structurally different aglycones. This assessment of this assay revealed that addition of Triton X-100 as enzyme activator was necessary because of its apparent inhibitory effects on interfering reactions. Under these conditions, accordance of the data with results published in the literature was obtained. We present for the first time an UDP-glucuronosyltransferase assay adapted on a fast analyser centrifuge which allows a rapid and sensitive measurement of enzyme activity that is very useful for kinetic constant determination, without consuming a large volume of reagents.     

Fluorescence quenching studies of bovine growth hormone in several conformational states

The use of steady-state fluorescence quenching methods is reported as a probe of the accessibility of the single fluorescent tryptophan residue of bovine growth hormone (bGH, bovine somatotropin, bSt) in four solution-state conformations. Different bGH conformations were prepared by using previous knowledge of the multi-state nature of the equilibrium unfolding pathway for bGH: alterations in denaturant and protein concentration yielded different bGH conformations (native, monomeric intermediate, associated intermediate and unfolded). Because the intramolecular fluorescence quenching which occurs in the native state is reduced when the protein unfolds to any of the other conformations, steady-state fluorescence intensity measurements can be used to monitor bGH unfolding as well as the formation of the associated intermediate. These steady-state intensity changes have been confirmed with fluorescence lifetime measurements for the different conformational states of bGH. Fluorescence quenching results were obtained using the quenchers iodide (ionic), acrylamide (polar) and trichloroethanol (non-polar). Analysis of the results for native-state bGH reveals that the tryptophan environment is slightly non-polar (in agreement with the emission maximum of 335 nm) and the tryptophan is more exposed to acrylamide than most native-state tryptophan residues which have been studied. The tryptophan is most accessible to all quenchers in the unfolded state, because no steric restrictions inhibit quencher interaction with the tryptophan residue. The iodide quenching results indicate that the associated intermediate tryptophan is not accessible to iodide, probably due to negative charges inhibiting iodide penetration. The associated intermediate tryptophan is less accessible to all three quenchers than the monomeric intermediate tryptophan, due to tight packing of molecules in the associated intermediate state.     

A model of sequential branching in hierarchical cell fate determination

Multipotent stem or progenitor cells undergo a sequential series of binary fate decisions, which ultimately generate the diversity of differentiated cells. Efforts to understand cell fate control have focused on simple gene regulatory circuits that predict the presence of multiple stable states, bifurcations and switch-like transitions. However, existing gene network models do not explain more complex properties of cell fate dynamics such as the hierarchical branching of developmental paths. Here, we construct a generic minimal model of the genetic regulatory network controlling cell fate determination, which exhibits five elementary characteristics of cell differentiation: stability, directionality, branching, exclusivity, and promiscuous expression. We argue that a modular architecture comprising repeated network elements reproduces these features of differentiation by sequentially repressing selected modules and hence restricting the dynamics to lower dimensional subspaces of the high-dimensional state space. We implement our model both with ordinary differential equations (ODEs), to explore the role of bifurcations in producing the one-way character of differentiation, and with stochastic differential equations (SDEs), to demonstrate the effect of noise on the system. We further argue that binary cell fate decisions are prevalent in cell differentiation due to general features of the underlying dynamical system. This minimal model makes testable predictions about the structural basis for directional, discrete and diversifying cell phenotype development and thus can guide the evaluation of real gene regulatory networks that govern differentiation.