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71.
Aruliah Rajasekar Thambidurai Ganesh Babu Sundaram Maruthamuthu Shunmugiah Thevar Karutha Pandian Sidhan Mohanan Narayanan Palaniswamy 《World journal of microbiology & biotechnology》2007,23(8):1065-1074
A facultative anaerobic species Serratia marcescens ACE2 isolated from the corrosion products of a diesel-transporting pipeline in North West India was identified by 16S rDNA
sequence analysis. The role of Serratia marcesens ACE2 on biodegradation of commercial corrosion inhibitor (CCI) and its influence on the corrosion of API 5LX steel has been
enlightened. The degrading strain ACE2 is involved in the process of corrosion of steel API 5LX and also utilizes the inhibitor
as organic source. The quantitative biodegradation efficiency of corrosion inhibitor was 58%, which was calculated by gas
chromatography mass spectrum analysis. The effect of CCI on the growth of bacteria and its corrosion inhibition efficiency
were investigated. Additionally, the role of this bacterium in corrosion of steel has been investigated by powder X-ray diffractometer
(XRD) and scanning electron microscope studies. The presence of high-intensity ferric oxides and manganese oxides noticed
from the XRD indicates that ACE2 enhances the corrosion process in presence of inhibitor as a carbon source. This basic study
will be useful for the development of new approaches for the detection, monitoring and control of microbial corrosion in petroleum
product pipelines. 相似文献
72.
The RIKEN Centre for Developmental Biology recently hosted a joint UK-Asian Pacific Developmental Biology Network meeting called 'Development and Emergence of Function in the Nervous System'. The meeting's program, which was organized by James Briscoe and Krishnaswamy VijayRaghavan, covered a spectrum of processes and mechanisms in neurodevelopment, ranging from the patterning of neural tissue to the initiation of a functional nervous system. One idea to have emerged during this meeting is that 'form underlies function'. Here we discuss some of the themes that were addressed and provide a broad impression of what was a highly stimulating and successful conference. 相似文献
73.
In prokaryotes, DNA replication is initiated by the binding of DnaA to the oriC region of the chromosome to load the primosome machinery and start a new replication round. Several proteins control these events in Escherichia coli to ensure that replication is precisely timed during the cell cycle. Here, we report the crystal structure of HobA (HP1230) at 1.7 A, a recently discovered protein that specifically interacts with DnaA protein from Helicobacter pylori (HpDnaA). We found that the closest structural homologue of HobA is a sugar isomerase (SIS) domain containing protein, the phosphoheptose isomerase from Pseudomonas aeruginosa. Remarkably, SIS proteins share strong sequence homology with DiaA from E. coli; yet, HobA and DiaA share no sequence homology. Thus, by solving the structure of HobA, we unexpectedly discovered that HobA is a H. pylori structural homologue of DiaA. By comparing the structure of HobA to a homology model of DiaA, we identified conserved, surface-accessible residues that could be involved in protein-protein interaction. Finally, we show that HobA specifically interacts with the N-terminal part of HpDnaA. The structural homology between DiaA and HobA strongly supports their involvement in the replication process and these proteins could define a new structural family of replication regulators in bacteria. 相似文献
74.
Cho K Agrawal GK Shibato J Jung YH Kim YK Nahm BH Jwa NS Tamogami S Han O Kohda K Iwahashi H Rakwal R 《Journal of proteome research》2007,6(9):3581-3603
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An integrative approach combining ion mobility mass spectrometry,X-ray crystallography,and nuclear magnetic resonance spectroscopy to study the conformational dynamics of α1-antitrypsin upon ligand binding
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Mun Peak Nyon Tanya Prentice Jemma Day John Kirkpatrick Ganesh N Sivalingam Geraldine Levy Imran Haq James A Irving David A Lomas John Christodoulou Bibek Gooptu Konstantinos Thalassinos 《Protein science : a publication of the Protein Society》2015,24(8):1301-1312
Native mass spectrometry (MS) methods permit the study of multiple protein species within solution equilibria, whereas ion mobility (IM)-MS can report on conformational behavior of specific states. We used IM-MS to study a conformationally labile protein (α1-antitrypsin) that undergoes pathological polymerization in the context of point mutations. The folded, native state of the Z-variant remains highly polymerogenic in physiological conditions despite only minor thermodynamic destabilization relative to the wild-type variant. Various data implicate kinetic instability (conformational lability within a native state ensemble) as the basis of Z α1-antitrypsin polymerogenicity. We show the ability of IM-MS to track such disease-relevant conformational behavior in detail by studying the effects of peptide binding on α1-antitrypsin conformation and dynamics. IM-MS is, therefore, an ideal platform for the screening of compounds that result in therapeutically beneficial kinetic stabilization of native α1-antitrypsin. Our findings are confirmed with high-resolution X-ray crystallographic and nuclear magnetic resonance spectroscopic studies of the same event, which together dissect structural changes from dynamic effects caused by peptide binding at a residue-specific level. IM-MS methods, therefore, have great potential for further study of biologically relevant thermodynamic and kinetic instability of proteins and provide rapid and multidimensional characterization of ligand interactions of therapeutic interest.PDB Code(s): 4PYW 相似文献
80.
Qing-Yin Wang Hongping Dong Bin Zou Ratna Karuna Kah Fei Wan Jing Zou Agatha Susila Andy Yip Chao Shan Kim Long Yeo Haoying Xu Mei Ding Wai Ling Chan Feng Gu Peck Gee Seah Wei Liu Suresh B. Lakshminarayana CongBao Kang Julien Lescar Francesca Blasco Paul W. Smith Pei-Yong Shi 《Journal of virology》2015,89(16):8233-8244