Interplay between SARS-CoV-2-derived miRNAs,immune system,vitamin D pathway and respiratory system

The new coronavirus pandemic started in China in 2019. The intensity of the disease can range from mild to severe, leading to death in many cases. Despite extensive research in this area, the exact molecular nature of virus is not fully recognized; however, according to pieces of evidence, one of the mechanisms of virus pathogenesis is through the function of viral miRNAs. So, we hypothesized that SARS-CoV-2 pathogenesis may be due to targeting important genes in the host with its miRNAs, which involved in the respiratory system, immune pathways and vitamin D pathways, thus possibly contributing to disease progression and virus survival. Potential miRNA precursors and mature miRNA were predicted and confirmed based on the virus genome. The next step was to predict and identify their target genes and perform functional enrichment analysis to recognize the biological processes connected with these genes in the three pathways mentioned above through several comprehensive databases. Finally, cis-acting regulatory elements in 5′ regulatory regions were analysed, and the analysis of available RNAseq data determined the expression level of genes. We revealed that thirty-nine mature miRNAs could theoretically derive from the SARS-CoV-2 genome. Functional enrichment analysis elucidated three highlighted pathways involved in SARS-CoV-2 pathogenesis: vitamin D, immune system and respiratory system. Our finding highlighted genes' involvement in three crucial molecular pathways and may help develop new therapeutic targets related to SARS-CoV-2.     

Population fluctuations of cabbage aphid,Brevicoryne brassicae (L.) (Hom.: Aphididae) and its natural parasitism rate on different canola cultivars

The cabbage aphid, Brevicoryne brassicae is one of the most destructive pests in Cruciferaceae or Brassicaceae plant family around the world. According to this pest rapid resistance to insecticide, using the resistant cultivars should be evaluated. In the present study, the different canola cultivars resistance against the cabbage aphid and the population fluctuations in canola fields and also the natural parasitism are evaluated in Shahre-rey region. To evaluate the population fluctuations and its natural parasitism on the RGS003, SLMOO46, Karag2, Licord, Sarigol, Opera, Ocapi and Talaei canola cultivars were cultivated in four replications using the complete randomised block design. The population fluctuations studies showed that the pest is active during the canola growth period in studied region, but the peak of population and damage is found in 6 May month. The results showed that natural parasitism percentage of cabbage aphid on different canola cultivars has not significant difference, but the parasitism amount in different sampling dates was significantly different, so that the natural parasitism maximum observed in date 29 April. These results showed that the different canola cultivars have significant effects on cabbage aphid and parasitoids activity amount. Using the present results, the recognised cultivars in integrated pest management programmes can be used to grow the laboratory aphids as the parasitoids hosts.     

The toxicity and synergistic effects of alkyl-succinate oil on the first nymphal instars of the citrus cottony scale,Pulvinaria aurantii Cock. (Hem.: Coccidae)

The citrus cottony scale, Pulvinaria aurantii Cock. (Hem.: Coccidae) is one of the most important citrus pests in Iran. This study investigated the toxicity and synergistic effects of organophosphorous insecticides (Malathion, Chlorpyrifos, Buprofezin and DG oil) on first nymphal instars of P. aurantii in the laboratory conditions (25?±?1?°C, 75?±?5% RH and 16L:8D photoperiod). The values of LC₅₀ for Malathion, Chlorpyrifos and Buprofezin insecticides on the first nymphal instars were calculated as 76.90, 105.25 and 24.70?ppm, respectively. Also, results indicated that Buprofezin and Pyriproxifen are the most effective insecticides on first nymphal instars of P. aurantii. The values of LC₅₀ for each insecticide without oil and in half dose along with DG oil were equal. This was an indication for synergism role of DG oil combination. The results of this study showed that DG oil not only decreases the consumption of insecticides, but also increases their efficacy.     

Improvement of acetone,butanol, and ethanol production from woody biomass using organosolv pretreatment

Bioprocess and Biosystems Engineering - A suitable pretreatment is a prerequisite of efficient acetone–butanol–ethanol (ABE) production from wood by Clostridia. In this study,...     

Susceptibility of β1 Na+-K+ pump subunit to glutathionylation and oxidative inhibition depends on conformational state of pump

Glutathionylation of cysteine 46 of the β1 subunit of the Na(+)-K(+) pump causes pump inhibition. However, the crystal structure, known in a state analogous to an E2·2K(+)·P(i) configuration, indicates that the side chain of cysteine 46 is exposed to the lipid bulk phase of the membrane and not expected to be accessible to the cytosolic glutathione. We have examined whether glutathionylation depends on the conformational changes in the Na(+)-K(+) pump cycle as described by the Albers-Post scheme. We measured β1 subunit glutathionylation and function of Na(+)-K(+)-ATPase in membrane fragments and in ventricular myocytes. Signals for glutathionylation in Na(+)-K(+)-ATPase-enriched membrane fragments suspended in solutions that preferentially induce E1ATP and E1Na(3) conformations were much larger than signals in solutions that induce the E2 conformation. Ouabain further reduced glutathionylation in E2 and eliminated an increase seen with exposure to the oxidant peroxynitrite (ONOO(-)). Inhibition of Na(+)-K(+)-ATPase activity after exposure to ONOO(-) was greater when the enzyme had been in the E1Na(3) than the E2 conformation. We exposed myocytes to different extracellular K(+) concentrations to vary the membrane potential and hence voltage-dependent conformational poise. K(+) concentrations expected to shift the poise toward E2 species reduced glutathionylation, and ouabain eliminated a ONOO(-)-induced increase. Angiotensin II-induced NADPH oxidase-dependent Na(+)-K(+) pump inhibition was eliminated by conditions expected to shift the poise toward the E2 species. We conclude that susceptibility of the β1 subunit to glutathionylation depends on the conformational poise of the Na(+)-K(+) pump.     

Investigation of the ameliorating effects of eggplant, datura, orange nightshade, local Iranian tobacco, and field tomato as rootstocks on alkali stress in tomato plants

Among the most important quality parameters of irrigation water used for greenhouse crops, alkalinity of water is considered critical due to its impact on soil or growing medium solution pH. In this study, plant growth, Fe content, photosynthetic pigment content, maximal quantum yield of PSII photochemistry (F_v/F_m), performance index (PI), leaf relative water content (LRWC), and soluble sugars concentration were investigated in nongrafted and grafted tomato (Lycopersicon esculentum Mill. cv. Red stone) plants onto five rootstocks of eggplant (Solanum melongena cv. Long purple), datura (Datura patula), orange nightshade (Solanum luteum Mill.), local Iranian tobacco (Nicotiana tabacum), and field tomato (Lycopersicon esculentum Mill. cv. Cal.jn3), exposed to 0, 5, and 10 mM NaHCO₃ concentrations, to determine whether grafting could improve alkalinity tolerance of tomato. Significant depression of leaf area, leaf and stem dry mass, shoot and root Fe content and LRWC under high NaHCO₃ level was observed in both grafted and ungrafted plants. The highest reduction in the shoot Fe content was observed at 10 mM sodium bicarbonate in control plants (greenhouse tomato). Moreover, at high HCO₃ ^? level, the highest percentage of LRWC reduction was also recorded in ungrafted plants. Values of F_v/F_m and PI decreased significantly at 5 and 10 mM NaHCO₃ irrespective of rootstock type. The present study revealed that soluble sugars content, photosynthetic pigments content, F_v/F_m and PI values in plants grafted onto datura rootstock were higher than those in nongrafted and rest of the grafted plants. Thus, the use of datura rootstock could provide a useful tool to improve alkalinity tolerance of tomato plants under NaHCO₃ stress.     

Characterization of class I integrons among Salmonella enterica serovar Enteritidis isolated from humans and poultry

A total of 84 Salmonella enterica serovar Enteritidis (S. Enteritidis) isolates, 42 of human and 42 of poultry origin, were characterized for antimicrobial resistance patterns and class I integrons. Among them, 58 (69%) S. Enteritidis were multidrug-resistant (MDR) and showed resistance to two or more antibiotic classes. By PCR assays and DNA sequencing, 50 (59.5%) S. Enteritidis isolates were found to carry class I integrons. Amplification of internal variable regions of class I integrons revealed five different arrays (0.75 kb only, 1 kb only, 1.3 kb only, both 1 and 1.2 kb, and both 1 and 1.3 kb). The integrons were further sequenced and the dfrA25 (0.75 kb), aadA1 (1 kb), aadA2 (1 kb), bla(PSE1) (1.2 kb) aadA6-orfD (1.3 kb) gene cassette arrays were identified. Ciprofloxacin minimum inhibitory concentration (MIC) values for the three isolates that showed resistance or reduced susceptibility via the disc diffusion method were 0.5-4 μg mL(-1), although only three isolates exhibited resistance to cefteriaxone (MIC: 128-256 μg mL(-1)) and four isolates were resistant to florfenicol (MIC: 32-128 μg mL(-1)). In conclusion, the high rates of multidrug-resistance and class I integrons found among S. Enteritidis isolates in humans and poultry in Tehran suggest that efforts are needed to confine the prevalence of MDR Salmonella isolates.     

A novel single step double positive double negative selection strategy for beta-globin gene replacement

beta-Thalassemias are a heterogeneous group of autosomal recessive disorders, characterized by reduced or absence of the beta-globin chain production by the affected alleles. Transplantation of genetically corrected autologous hematopoietic stem cell (HSC) is an attractive approach for treatment of these disorders. Gene targeting (homologous recombination) has many desirable features for gene therapy due to its ability to target the mutant genes and restore their normal expression. In the present study, a specific gene construct for beta-globin gene replacement was constructed consisting of: two homologous stems including, upstream and downstream regions of beta-globin gene, beta-globin gene lying between hygromycin and neomycin resistant genes as positive selection markers and thymidine kinase expression cassettes at both termini as negative selection marker. All segments were subcloned into pBGGT vector. The final plasmid was checked by sequencing and named as pFBGGT. Mammalian cell line COS-7 was transfected with linear plasmid by lipofection followed by positive and negative selection. DNA of the selected cells was analyzed by PCR and sequencing to confirm the occurrence of homologous recombination. In this novel strategy gene replacement was achieved in one step and by a single construct.