Correlative Imaging of Fluorescent Proteins in Resin-Embedded Plant Material1

Fluorescent proteins (FPs) were developed for live-cell imaging and have revolutionized cell biology. However, not all plant tissues are accessible to live imaging using confocal microscopy, necessitating alternative approaches for protein localization. An example is the phloem, a tissue embedded deep within plant organs and sensitive to damage. To facilitate accurate localization of FPs within recalcitrant tissues, we developed a simple method for retaining FPs after resin embedding. This method is based on low-temperature fixation and dehydration, followed by embedding in London Resin White, and avoids the need for cryosections. We show that a palette of FPs can be localized in plant tissues while retaining good structural cell preservation, and that the polymerized block face can be counterstained with cell wall probes. Using this method we have been able to image green fluorescent protein-labeled plasmodesmata to a depth of more than 40 μm beneath the resin surface. Using correlative light and electron microscopy of the phloem, we were able to locate the same FP-labeled sieve elements in semithin and ultrathin sections. Sections were amenable to antibody labeling, and allowed a combination of confocal and superresolution imaging (three-dimensional-structured illumination microscopy) on the same cells. These correlative imaging methods should find several uses in plant cell biology.The localization of fluorescent proteins (FPs) in cells and tissues has become one of the major tools in cell biology (Tsien, 1998; Shaner et al., 2005). Advances in confocal microscopy have meant that many proteins can be tagged with appropriate fluorescent markers and tracked as they move within and between cells (Chapman et al., 2005). Additional approaches involving photobleaching and photoactivation of FPs have opened up new avenues for exploring protein dynamics and turnover within cells (Lippincott-Schwartz et al., 2003). However, not all cells are amenable to live-cell imaging, which in plants is usually restricted to surface cells such as the leaf epidermis. An example is the phloem. The delicate nature of sieve elements and companion cells, which are under substantial hydrostatic pressure, has made studies of the fine structure of these cells particularly difficult (Knoblauch and van Bel, 1998). Despite this, significant advances have been made in imaging the phloem through inventive use of imaging protocols that allow living sieve elements to be observed as they translocate assimilates (for review, see Knoblauch and Oparka, 2012). However, determining the precise localization of the plethora of proteins located within the sieve element (SE)-companion cell (CC) complex remains a technical challenge. The phloem is the conduit for long-distance movement of macromolecules in plants, including viral genomes. For several viruses, the entry into the SE-CC complex is a crucial step that determines the capacity for long-distance movement. Identifying the cell types within the phloem that restrict the movement of some viruses is technically challenging due to the small size of phloem cells and their location deep within plant organs (Nelson and van Bel, 1998).The problems associated with imaging proteins in phloem tissues prompted us to explore methods for retaining the fluorescence of tagged proteins within tissues not normally amenable to confocal imaging. Previously, we used superresolution imaging techniques on fixed phloem tissues sectioned on a Vibroslice, providing information on the association between a viral movement protein (MP) and plasmodesmata (PD) within the SE-CC complex (Fitzgibbon et al., 2010). However, we wished to explore the same cells using correlative light and electron microscopy (CLEM), necessitating the development of methods that would allow sequential imaging of cells using fluorescence microscopy and transmission electron microscopy (TEM). To this end, we developed a protocol that retains fluorescent proteins through aldehyde fixation and resin embedding.In the last 10 years there has been significant interest in imaging fluorescent proteins in semithin sections (for review, see Cortese et al., 2009). Luby-Phelps and colleagues (2003) first described a method for retaining GFP fluorescence after fixation and resin embedding, but their method has not seen widespread application. The advent of superresolution imaging techniques (for review, see Bell and Oparka, 2011) has stimulated considerable interest in this field as the retention of fluorescence in thin sections means that cells can be imaged using techniques such as photoactivation light microscopy and stochastic optical reconstruction microscopy, allowing a lateral resolution of less than 10 nm to be achieved (Subach et al., 2009; Xu et al., 2012). A number of studies have described CLEM on the same cells (Luby-Phelps et al., 2003; Betzig et al., 2006; Watanabe et al., 2011). Advances in this field were reviewed recently (Jahn et al., 2012; see contributions in Muller-Reichert and Verkade, 2012). For example, Pfeiffer et al. (2003) were able to image SEs and CCs using high-pressure freezing, followed by freeze substitution in acetone and resin embedding. They then used thick optical sections of the tissue to locate cells of interest, and these were subsequently imaged using TEM. However, there have been few attempts to retain FPs in resin-embedded plant tissues. Thompson and Wolniak (2008) described the retention of mCitrine fused to an SE-plasma membrane protein in glycol methacrylate sections. The fluorescent signal was stable using wide-field microscopy but bleached rapidly under the confocal microscope.To date, cryosections have been the preferred choice for CLEM in mammalian tissues (Watanabe et al., 2011). Recently, Lee et al. (2011) chemically fixed Arabidopsis (Arabidopsis thaliana) seedlings, cut 50-μm sections, and examined these with a confocal microscope. After confocal mapping the sections were embedded in resin and thin sectioned. These authors were able to locate the same PD pit fields using confocal and TEM, providing important information on the localization of a novel PD protein. As general rule, cryosectioning is a time-consuming process, and subcellular details may be obscured in cryosections because of poor tissue contrast (Watanabe et al., 2011). A major problem with imaging FPs in resin sections has been that GFP and its derivatives are quenched by the acidic, oxidizing conditions required for fixation, dehydration, and embedding of delicate specimens (Tsien, 1998; Keene et al., 2008). Recently, however, Watanabe et al. (2011) explored the retention of FPs in Caenorhabditis elegans cells after fixation by different aldehydes and embedding media. These authors tested a range of resins and found that Citrine and tandem dimer Eos (tdEos) could be retained in methacrylate plastic sections. This material was difficult to cut thinly (<70 nm) compared to epoxy-based resins, but the authors obtained valuable correlative images using stimulated emission depletion microscopy and photoactivation light microscopy followed by low-voltage scanning electron microscopy.Because the retention of fluorescent proteins may differ between plant and animal cells, we explored a number of approaches for retaining fluorescent proteins in resin. Using low-temperature conditions (<8°C) during fixation and dehydration, we could retain strong fluorescence prior to tissue embedding. We also explored different embedding media and found that tissue could be effectively polymerized in London Resin (LR) White while retaining sufficient fluorescence for confocal imaging. Using water-dipping lenses, we were able to detect fluorescent proteins in optical sections up to 40 μm below the surface of the block face. Ultrathin sections from the same blocks showed good structural preservation and allowed CLEM. Subsequently, we cut 1- to 2-μm sections and examined these using confocal microscopy and three-dimensional-structured illumination microscopy (3D-SIM). Sections could be counterstained with a number of conventional fluorophores and antibodies, allowing colocalization studies. These simple methods allow successive imaging of FPs with the light and electron microscope, combining the strengths of both imaging platforms. We believe this approach will have significant utility for tissues that are recalcitrant to conventional confocal imaging.     

Tradeoffs in basal area growth and reproduction shift over the lifetime of a long-lived tropical species

Understanding of the extent to which reproductive costs drive growth largely derives from reproductively mature temperate trees in masting and non-masting years. We modeled basal area increment (BAI) and explored current growth–reproduction tradeoffs and changes in such allocation over the life span of a long-lived, non-masting tropical tree. We integrated rainfall and soil variables with data from 190 Bertholletia excelsa trees of different diameter at breast height (DBH) sizes, crown characteristics, and liana loads, quantifying BAI and reproductive output over 4 and 6 years, respectively. While rainfall explains BAI in all models, regardless of DBH class or ontogenic stage, light (based on canopy position and crown form) is most critical in the juvenile (5 cm ≤ DBH < 50 cm) phase. Suppressed trees are only present as juveniles and grow ten times slower (1.45 ± 2.73 m² year^?1) than trees in dominant and co-dominant positions (13.25 ± 0.82 and 12.90 ± 1.35 m² year^?1, respectively). Additionally, few juvenile trees are reproductive, and those that are, demonstrate reduced growth, as do reproductive trees in the next 50 to 100 cm DBH class, suggesting growth–reproduction tradeoffs. Upon reaching the canopy, however, and attaining a sizeable girth, this pattern gradually shifts to one where BAI and reproduction are influenced independently by variables such as liana load, crown size and soil properties. At this stage, BAI is largely unaffected by fruit production levels. Thus, while growth–reproduction tradeoffs clearly exist during early life stages, effects of reproductive allocation diminish as B. excelsa increases in size and maturity.     

High diversity of pipistrelloid bats (Vespertilionidae: Hypsugo,Neoromicia, and Pipistrellus) in a West African rainforest with the description of a new species

The pipistrelloid bats (genera Hypsugo, Neoromicia, and Pipistrellus) of Africa have been poorly studied, partly as a result of problems associated with species identification. This paper examines the diversity of pipistrelloid bats from Mount Nimba, a biodiversity hotspot in the Upper Guinean rainforest zone. Traditional morphometrics, the structure of the baculum, and sequences of the cytochrome oxidase subunit I (COI) gene were used to identify taxa. Species richness was exceptionally high and included at least ten taxa identifiable on molecular grounds. Of these, existing names could be assigned to six taxa. A seventh taxon was described as a species new to science, Neoromicia roseveari sp. nov. , and was distinguished on molecular grounds, craniodental morphology, and baculum structure. The remaining taxa may refer to as‐yet undescribed species but we lacked sufficient material to formally describe them here. The high species richness of pipistrelloid bats on Mount Nimba may be associated with the transition zone from lowland rainforest to moist savannah. © 2013 The Linnean Society of London     

Multi-environment analysis and improved mapping of a yield-related QTL on chromosome 3B of wheat

Improved mapping, multi-environment quantitative trait loci (QTL) analysis and dissection of allelic effects were used to define a QTL associated with grain yield, thousand grain weight and early vigour on chromosome 3BL of bread wheat (Triticum aestivum L.) under abiotic stresses. The QTL had pleiotropic effects and showed QTL x environment interactions across 21 diverse environments in Australia and Mexico. The occurrence and the severity of water deficit combined with high temperatures during the growing season affected the responsiveness of this QTL, resulting in a reversal in the direction of allelic effects. The influence of this QTL can be substantial, with the allele from one parent (RAC875) increasing grain yield by up to 12.5 % (particularly in environments where both heat and drought stress occurred) and the allele from the other parent (Kukri) increasing grain yield by up to 9 % in favourable environments. With the application of additional markers and the genotyping of additional recombinant inbred lines, the genetic map in the QTL region was refined to provide a basis for future positional cloning.     

Integration and religiosity among the Turkish second generation in Europe: a comparative analysis across four capital cities

Drawing on recent cross-national surveys of the Turkish second generation, we test hypotheses of secularization and of religious vitality for Muslim minorities in Europe. Secularization predicts an inverse relationship between structural integration and religiosity, such that the Turkish second generation would be less religious with higher levels of educational attainment and intermarriage. The religious vitality hypothesis predicts the maintenance of religion in the second generation, highlighting the role of religious socialization within immigrant families and communities. Taking a comparative approach, these hypotheses are tested in the context of different national approaches to the institutionalization of Islam as a minority religion in four European capital cities: Amsterdam, Berlin, Brussels and Stockholm. Across contexts, religious socialization strongly predicts second-generation religiosity, in line with religious vitality. The secularization hypothesis finds support only among the second generation in Berlin, however, where Islam is least accommodated.     

The larval development of Petrolisthes politus (Gray, 1831) (Crustacea: Decapoda: Porcellanidae) under laboratory conditions

The complete larval development of the shallow-water Caribbean porcellanid crab, Petrolisthes politus (Gray, 1831), is described and illustrated from specimens reared in the laboratory. Petrolisthes politus hatches as a prezoea, which persist for less than 90 minutes, and then molts through two subsequent zoeal stages, which are completed in 6 to 7 and 14 to 16 days, respectively, before the megalopal stage is reached. From a total of about 2000 zoeae that were cultured, only two reached the megalopal stage. The two megalopae survived for up to 5 days but did not molt to the first crab stage. The zoeae of P. politus are compared with those of Petrolisthes rufescens (Heller, 1861), Petrolisthes lamarckii (Leach, 1820), Petrolisthes carinipes (Heller, 1861), Petrolisthes coccineus (Owen 1839) and Petrolisthes pubescens (Stimpson, 1858), which were hitherto the only species having bifid lateral spines on the telson of the first zoeal stage.     

β-Glucosidase 2 (GBA2) Activity and Imino Sugar Pharmacology

β-Glucosidase 2 (GBA2) is an enzyme that cleaves the membrane lipid glucosylceramide into glucose and ceramide. The GBA2 gene is mutated in genetic neurological diseases (hereditary spastic paraplegia and cerebellar ataxia). Pharmacologically, GBA2 is reversibly inhibited by alkylated imino sugars that are in clinical use or are being developed for this purpose. We have addressed the ambiguity surrounding one of the defining characteristics of GBA2, which is its sensitivity to inhibition by conduritol B epoxide (CBE). We found that CBE inhibited GBA2, in vitro and in live cells, in a time-dependent fashion, which is typical for mechanism-based enzyme inactivators. Compared with the well characterized impact of CBE on the lysosomal glucosylceramide-degrading enzyme (glucocerebrosidase, GBA), CBE inactivated GBA2 less efficiently, due to a lower affinity for this enzyme (higher K_I) and a lower rate of enzyme inactivation (k_inact). In contrast to CBE, N-butyldeoxygalactonojirimycin exclusively inhibited GBA2. Accordingly, we propose to redefine GBA2 activity as the β-glucosidase that is sensitive to inhibition by N-butyldeoxygalactonojirimycin. Revised as such, GBA2 activity 1) was optimal at pH 5.5–6.0; 2) accounted for a much higher proportion of detergent-independent membrane-associated β-glucosidase activity; 3) was more variable among mouse tissues and neuroblastoma and monocyte cell lines; and 4) was more sensitive to inhibition by N-butyldeoxynojirimycin (miglustat, Zavesca®), in comparison with earlier studies. Our evaluation of GBA2 makes it possible to assess its activity more accurately, which will be helpful in analyzing its physiological roles and involvement in disease and in the pharmacological profiling of monosaccharide mimetics.     

In vivo effects of anacetrapib on preβ HDL: improvement in HDL remodeling without effects on cholesterol absorption

Cholesteryl ester transfer protein (CETP) transfers cholesteryl ester and triglyceride between HDL and apoB-containing lipoproteins. Anacetrapib (ANA), a reversible inhibitor of CETP, raises HDL cholesterol and lowers LDL cholesterol in dyslipidemic patients. We previously demonstrated that ANA increases macrophage-to-feces reverse cholesterol transport and fecal cholesterol excretion in hamsters, and increased preβ HDL-dependent cholesterol efflux via ABCA1 in vitro. However, the effects of ANA on in vivo preβ HDL have not been characterized. In vitro, ANA inhibited the formation of preβ, however in ANA-treated dyslipidemic hamsters, preβ HDL levels (measured by two-dimensional gel electrophoresis) were increased, in contrast to in vitro findings. Because changes in plasma preβ HDL have been proposed to potentially affect markers of cholesterol absorption with other CETP inhibitors, a dual stable isotope method was used to directly measure cholesterol absorption in hamsters. ANA treatment of hamsters (on either dyslipidemic or normal diet) had no effect on cholesterol absorption, while dalcetrapib-treated hamsters displayed an increase in cholesterol absorption. Taken together, these data support the notion that ANA promotes preβ HDL functionality in vivo, with no effects on cholesterol absorption.     

The role of short-chain fatty acids in the interplay between diet,gut microbiota,and host energy metabolism

Short-chain fatty acids (SCFAs), the end products of fermentation of dietary fibers by the anaerobic intestinal microbiota, have been shown to exert multiple beneficial effects on mammalian energy metabolism. The mechanisms underlying these effects are the subject of intensive research and encompass the complex interplay between diet, gut microbiota, and host energy metabolism. This review summarizes the role of SCFAs in host energy metabolism, starting from the production by the gut microbiota to the uptake by the host and ending with the effects on host metabolism. There are interesting leads on the underlying molecular mechanisms, but there are also many apparently contradictory results. A coherent understanding of the multilevel network in which SCFAs exert their effects is hampered by the lack of quantitative data on actual fluxes of SCFAs and metabolic processes regulated by SCFAs. In this review we address questions that, when answered, will bring us a great step forward in elucidating the role of SCFAs in mammalian energy metabolism.