Theoretical treatment of helix–coil transition of complexes DNA with two different ligands having different binding parameters

The melting transition of DNA–ligand complexes, allowing for two binding mechanisms to different DNA conformations is treated theoretically. The obtained results express the behavior of the experimentally measurable quantities, degree of denaturation, and concentrations of bound ligands on the temperature. The range of binding parameters is obtained, where denaturation curves become multiphasic. The possible application to the nanocomposites crystallization is discussed.     

Joint interaction of ethidium bromide and methylene blue with DNA. The effect of ionic strength on binding thermodynamic parameters

Large amount of data of experimental and theoretical studies have shown that ethidium bromide (EtBr) and methylene blue (MB) may bind to nucleic acids via three modes: intercalation between two adjacent base pairs, insertion into the plane between neighboring bases in the same strand (semi-intercalation), and outside binding with negatively charged backbone phosphate groups. The aim of the given research is to examine the behavior of these two ligands at both separate and joint DNA binding. The obtained experimental data show that the effect of simultaneous binding of EtBr and MB on double-stranded DNA has a non-additive effect of separate binding. The analyses of the melting thermodynamic parameters of DNA complexes with two bound ligands suggest competitive mechanism of interaction.     

Oxidation by nitrite of azurin and cytochrome c-551 from Pseudomonas aeruginosa

The nitrite oxidizes reduced azurin and cytochrome c-551 from Pseudomonas aeruginosa. The effects of pH, ionic strength and concentrations of nitrite, EDTA and the protein on the oxidation were investigated. The results obtained indicate that nitrite interacts not only with the terminal electron carrier of the nitrite reducing chain (nitrite reductase, cytochrome cd1) but also with the intermediate electron carrier components of the chain (azurin and cytochrome c-551).     

Biosynthesis of chlorophyll P-680 of photosystem II in greening leaves of plants adapted to heat shock

In etiolated pea and maize leaves illuminated after incubation at 38 degreesC, a new dark reaction was shown manifested in the bathochromic shift of spectral bands and accompanied by esterification of the product of protochlorophyllide photochemical reduction--Chld 684/676: Chld 684/676 --> Chl 688/680. After completion of the reaction a rapid (20-30 sec) quenching of the fluorescence of the reaction product (Chl 688/680) was observed. The reaction Chld 684/676 --> Chl 688/680 is inhibited under anaerobic conditions and in the presence of cyanide; the reaction accompanied by Chl 688/680 fluorescence quenching is not observed in pea mutants with impaired function of photosystem II reaction centers. The spectral properties of the formed Chl form with the absorption maximum at 680 nm, fluorescence quenching, and simultaneous synthesis of pheophytin suggest that the reaction is connected with the chlorophyll of photosystem II reaction center--P-680.     

Structural transitions associated with changes in the thickness and density of phospholipid bilayers

Relationship between a change of bilayer density and thickness and dissociation degree of the polar groups of phospholipid molecules was studied. It has been stated that with a decrease of ionization level a transition of bilayer from liquid to ordered state should occur. The latter is accompanied by a decrease of thickness and increase of density of the bilayer.     

Regulatory influence of hippocampus CA1 and CA3 areas on bulbar respiratory neurons under hypoxia

We studied the influence of stimulation of the CA1 and CA3 areas of the hippocampus on the impulse activity of respiratory neurons (RN) of the medulla oblongata under normal and oxygen deficiency conditions. Under conditions of normal atmospheric pressure, the electrical stimulation of the CA1 and CA3 areas of the hippocampus had mainly an inhibiting influence. In the initial phase, at a 4-5-thousand meter altitude, activation of frequent discharge of neurons occurred. In this situation, stimulation of the CA1 and CA3 areas was more accentuated than under conditions of normoxia. In the second phase (an altitude of 7.5-8 thousand meters), on the reduction of the impulse activity of neurons, stimulation of the CA1 and CA3 areas of the hippocampus induced untypical responses of these neurons.     

Mechanisms of resistance of Salmonella derby cells to streptomycin

Mechanisms of high streptomycin resistance (8000 micrograms/ml) in S. derby cells carrying R plasmids were studied. The cells were isolated from clinical materials. The findings showed that the streptomycin resistance determinant in the S. derby cells was localized on the plasmid. In cell-free extracts of the strains, there was detected no inactivation of aminoglycosides by phosphorylation, adenylation and acetylation of the antibiotic molecules. The plasmid elimination from the cells of S. derby K89 by ethidium bromide resulted in loosing of streptomycin resistance by the cells. This indirectly excluded the mechanism associated with modification of the ribosomes. Streptomycin resistance in the strains studied must be due to decreased permeability of the S. derby K89 cell envelopes for streptomycin.     

"Tie" calorimetry: theory and experiment

The results of theoretical and experimental investigations of the interaction of ligands to DNA permit to suggest the method of "tie" calorimetry by means of which the thermodynamic parameters of the cooperative transitions of DNA such as helix-coil, B-A and B-Z transitions were obtained. The prominence of the method is that the experimental samples contain such concentration of DNA that intermolecular interaction may be neglected. Moreover the smaller is the magnitude of the measured parameter the greater is the accuracy of the experimentally obtained data.     

The effect of detergent Triton X=100 on the light induced changes in the fluorescence yield of chloroplasts]

It is shown that light induced changes of the fluorescence yield (delta F) of isolated chloroplasts are affected by Triton X-100. delta F value descreases with the increase of the detergent concentration from 0 to 0.03%, increases in the range of 0.03--0.05% and is irreversibly blocked at concentrations more than 0.08--0.1%. The same dependence of delta F on the detergent concentration is obtained for "digitonin" fragments of chloroplasts enriched in the photosystem 2, but not for fragments enriched in the photosystem 1. Light induced delta F of chloroplasts treated by detergent were activated by hydroxylamine and saturated at lower light intensities than delta F of untreated chloroplasts. Addition of 0.01% Triton resulted in an activation of light induced delta F of chloroplasts with damaged donor part of photosystem 2. It is suggested that the complex dependence of delta F of chloroplasts on the Triton concentration is due to superposition of several effects: the uncoupling of photophosphorylation, inactivation of the electron transport chain in the donor and acceptor parts of photosystem 2, and changes of acting concentration of Triton X-100 within the range of critical micelle concentration.