排序方式: 共有13条查询结果,搜索用时 0 毫秒
11.
Sze SH; Roytberg MA; Gelfand MS; Mironov AA; Astakhova TV; Pevzner PA 《Bioinformatics (Oxford, England)》1998,14(1):14-19
MOTIVATION: Gene annotation is the final goal of gene prediction
algorithms. However, these algorithms frequently make mistakes and
therefore the use of gene predictions for sequence annotation is hardly
possible. As a result, biologists are forced to conduct time-consuming gene
identification experiments by designing appropriate PCR primers to test
cDNA libraries or applying RT-PCR, exon trapping/amplification, or other
techniques. This process frequently amounts to 'guessing' PCR primers on
top of unreliable gene predictions and frequently leads to wasting of
experimental efforts. RESULTS: The present paper proposes a simple and
reliable algorithm for experimental gene identification which bypasses the
unreliable gene prediction step. Studies of the performance of the
algorithm on a sample of human genes indicate that an experimental protocol
based on the algorithm's predictions achieves an accurate gene
identification with relatively few PCR primers. Predictions of PCR primers
may be used for exon amplification in preliminary mutation analysis during
an attempt to identify a gene responsible for a disease. We propose a
simple approach to find a short region from a genomic sequence that with
high probability overlaps with some exon of the gene. The algorithm is
enhanced to find one or more segments that are probably contained in the
translated region of the gene and can be used as PCR primers to select
appropriate clones in cDNA libraries by selective amplification. The
algorithm is further extended to locate a set of PCR primers that uniformly
cover all translated regions and can be used for RT-PCR and further
sequencing of (unknown) mRNA.
相似文献
12.
The use of western blot analysis of nuclear and cytoplasmic extracts of BgDNV densovirusinfected German cockroach, Blattella germanica, the intracellular localization of the regulatory proteins of the corresponding densovirus was investigated in cell culture. It was demonstrated that two proteins, namely NS1 and NS3, were predominantly localized in the nucleus, whereas NS2 protein was equally distributed in the nuclei and the cytoplasm. The data obtained are important for understanding the potential functions of densovirus regulatory proteins. The intracellular localization of NS3 protein was determined for the first time for any densovirus. 相似文献
13.
A. S. Kagramanova T. V. Kapelinskaya A. L. Korolev D. V. Mukha 《Russian Journal of Genetics》2010,46(8):924-931
Using cosmid vector, a gene library of German cockroach Blattella germanica was constructed. From this library, clones containing full-length copies of two subfamilies of R1 retroposons were selected.
Retroposons R1 of German cockroach belonging to different subfamilies were shown to be different in domain organization of
the ORF2 C-terminal region. For the first time, retroposons transmembrane domains were identified in the sequences of R1.
It was demonstrated that two retroposon R1 subfamilies of German cockroach arose as a result of intragenomic divergence rather
than via horizontal transfer of alien mobile element into cockroach genome. The differences in domain organization appeared
not as a result of saltatory recombination processes, but as a consequence of gradual mutation accumulation, which led to
either degeneration, or to domain formation. 相似文献