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91.
Surya P. Bhatt Hrudaya P. Nath Young-il Kim Rekha Ramachandran Jubal R. Watts Nina L. J. Terry Sushil Sonavane Swati P. Deshmane Prescott G. Woodruff Elizabeth C. Oelsner Sandeep Bodduluri MeiLan K. Han Wassim W. Labaki J. Michael Wells Fernando J. Martinez R. Graham Barr Mark T. Dransfield for the SPIROMICS investigators 《Respiratory research》2018,19(1):257
Background
Chronic obstructive pulmonary disease (COPD) is associated with a two-to-five fold increase in the risk of coronary artery disease independent of shared risk factors. This association is hypothesized to be mediated by systemic inflammation but this link has not been established.Methods
We included 300 participants enrolled in the SPIROMICS cohort, 75 each of lifetime non-smokers, smokers without airflow obstruction, mild-moderate COPD, and severe-very severe COPD. We quantified emphysema and airway disease on computed tomography, characterized visual emphysema subtypes (centrilobular and paraseptal) and airway disease, and used the Weston visual score to quantify coronary artery calcification (CAC). We used the Sobel test to determine whether markers of systemic inflammation mediated a link between spirometric and radiographic features of COPD and CAC.Results
FEV1/FVC but not quantitative emphysema or airway wall thickening was associated with CAC (p?=?0.036), after adjustment for demographics, diabetes mellitus, hypertension, statin use, and CT scanner type. To explain this discordance, we examined visual subtypes of emphysema and airway disease, and found that centrilobular emphysema but not paraseptal emphysema or bronchial thickening was independently associated with CAC (p?=?0.019). MMP3, VCAM1, CXCL5 and CXCL9 mediated 8, 8, 7 and 16% of the association between FEV1/FVC and CAC, respectively. Similar biomarkers partially mediated the association between centrilobular emphysema and CAC.Conclusions
The association between airflow obstruction and coronary calcification is driven primarily by the centrilobular subtype of emphysema, and is linked through bioactive molecules implicated in the pathogenesis of atherosclerosis.Trial Registration
ClinicalTrials.gov: Identifier: NCT01969344.92.
M. Anila H. K. Mahadeva Swamy R. R. Kale V. P. Bhadana M. S. Anantha Brajendra S. K. Hajira C. H. Balachiranjeevi M. Ayyappa Dass S. Bhaskar T. Dilip K. Pranathi M. B. V. N. Kousik G. Harika K. Swapnil K. Chaitra B. Laxmi Prasanna E. Punniakotti Pragya Sinha G. Rekha V. Abhilash Kumar S. M. Balachandran M. S. Madhav Archana Giri B. C. Viraktamath R. M. Sundaram 《Molecular breeding : new strategies in plant improvement》2018,38(12):147
MTU 1010 is a high-yielding mega-variety of rice grown extensively in India. However, it does not perform well in soils with low phosphorus (P) levels. With an objective to improve MTU 1010 for tolerance to low soil P, we have transferred Pup1, a major quantitative trait locus (QTL) associated with tolerance from another mega-variety, Swarna, through marker-assisted backcross breeding (MABB). Foreground selection of the F1 and backcross plants was performed with the co-dominant, closely linked CAPS marker, K20-2, while two flanking markers RM28011 and RM28157 were utilized for recombinant selection. At each backcross generation, positive plants were also analyzed with a set of 85 parental polymorphic SSR markers to identify the QTL-positive plants possessing maximum introgression of MTU 1010 genome. At BC2F1, the best backcross plant was selfed to generate BC2F2s. Among them, the plants homozygous for Pup1 (n?=?22) were reconfirmed using the functional marker for Pup1, viz., K46-1, and they were advanced through pedigree method of selection until BC2F6 generation. A total of five elite BC2F6 lines, possessing Pup1 and phenotypically similar to MTU 1010, were screened in the low soil P plot and normal plot (with optimum soil P levels) during wet season, 2016. All the selected lines showed better performance under low P soil with more number of productive tillers, better root system architecture, and significantly higher yield (>?390%) as compared to MTU 1010. Further, under normal soil, the lines were observed to be similar to or better than MTU 1010 for most of the agro-morphological traits and yield. This study represents the successful application of marker-assisted selection for improvement of tolerance to low soil P in a high-yielding Indian rice variety. 相似文献
93.
Jayachandran Venkatesan P. D. Rekha Sukumaran Anil Ira Bhatnagar P. N. Sudha Chutiwan Dechsakulwatana Se-Kwon Kim Min Suk Shim 《Biotechnology and Bioprocess Engineering》2018,23(4):383-393
Hydroxyapatite (HA), a bioceramic, is a widely utilized material for bone tissue repair and regeneration because of its excellent properties such as biocompatibility, exceptional mechanical strength, and osteoconductivity. HA can be obtained by both synthetic and natural means. Animal bones are often considered a promising natural resource for the preparation of pure HA for biological and biomedical applications. Cuttlefish bone, also called as cuttlebone, mainly consists of calcium carbonate, and pure HA can be produced by adding phosphoric acid or ammonium hydrogen phosphate to it. Recently, cuttlefish bone-derived HA has shown promising results in terms of bone tissue repair and regeneration. The synthesized cuttlefish bone-derived has shown excellent biocompatibility, cell proliferation, increased alkaline phosphate activity, and efficient biomineralization ability with mesenchymal stem cells and osteoblastic cells. To further improve the biological properties of cuttlefish bone-derived HA, bioglass, polycaprolactone, and polyvinyl alcohol were added to it, which gave better results in terms of cell proliferation and osteogenic differentiation. Cuttlefish bone-derived HA with polymeric substances provides excellent bone formation under in vivo conditions. The studies indicate that cuttlefish bone-derived HA, along with polymeric and, protein materials, will be promising biomaterials in the field of bone tissue regeneration. 相似文献
94.
G. Rekha V. Abhilash Kumar B. C. Viraktamath K. Pranathi M. B. V. N. Kousik B. Laxmi Prasanna C. Backiyalakshmi Pragya Sinha R. K. Ravindra S. Bhaskar S. K. Hajira C. H. Balachiranjeevi K. Swapnil R. Rambabu G. Harika E. Punniakotti M. Anila H. K. Mahadev T. Dilip Kumar A. Yugander K. Chaitra M. Praveen K. R. Madhavi M. S. Prasad G. S. Laha C. N. Neeraja S. M. Balachandran P. Senguttuvel R. A. Fiyaz J. Badri A. Giri L. V. Subba Rao V. Ravindra Babu R. M. Sundaram 《Journal of plant biochemistry and biotechnology.》2018,27(4):463-472
Improved Samba Mahsuri (ISM) is a popular, high-yielding, bacterial blight resistant rice variety possessing medium-slender grain type. As ISM is highly susceptible to blast disease of rice, through the present study we have transferred two major blast resistance genes, Pi2 and Pi54 into the elite variety by marker-assisted backcross breeding. The two blast resistance genes were transferred to ISM through sets of backcrosses. In every backcross generation, PCR-based markers, specific for the blast resistance genes (Pi2 and Pi54) and bacterial blight resistance genes (Xa21, xa13 and xa5) were utilized for foreground selection, while a set of 144 parental polymorphic SSR markers were used for background selection and backcrossing was carried out until BC2 generation. A solitary BC2F1 plant possessing Pi2 or Pi54 along with Xa21, xa13 and xa5 and >?90% recovery of ISM genome was selected from the two sets of backcrosses were crossed and the intercross F1s (ICF1s) thus obtained were selfed to generate ICF2s. Homozygous ICF2 plants carrying all the five resistance genes were identified through markers and advanced through selfing till ICF5 generation by adopting pedigree method of selection. Three best lines at ICF5, possessing excellent resistance against bacterial blight and blast and closely resembling or superior to ISM in terms of grain quality: yield and agro-morphological traits have been identified and advanced for multi-location trials. 相似文献
95.
Genotyping of Novel SNPs in BMPR1B,BMP15, and GDF9 Genes for Association with Prolificacy in Seven Indian Goat Breeds 总被引:1,自引:0,他引:1
Sonika Ahlawat Rekha Sharma Manoranjan Roy Sanjay Mandakmale Ved Prakash M S Tantia 《Animal biotechnology》2016,27(3):199-207
Goats form the backbone of rural livelihood and financial security systems in India but their population is showing decreasing trend. Improvement of reproductive traits such as prolificacy offers a solution to stabilize the decreasing goat population and to meet the nutritional needs of growing human population. In the present study, six novel SNPs in three candidate genes for prolificacy (BMPR1B, BMP15, and GDF9) were genotyped in seven breeds of Indian goats to evaluate their association with litter size. Tetra primer ARMS-PCR and PCR-RFLP based protocols were developed for genotyping six novel SNPs, namely, T(-242)C in BMPR1B; G735A and C808G in BMP15; and C818T, A959C, and G1189A in GDF9 gene. The effect of breed was highly significant (p ≤ 0.01) on litter size but the effect of genotype was nonsignificant. The effect of parity on litter size was also significant in the prolific Black Bengal breed. The litter size differences observed between breeds are attributed to breed differences. Novel mutations observed at different loci in GDF9, BMP15, and BMPR1B genes do not contribute to the reproductive capability of the investigated breeds. Further studies with more number of breeds and animals exploring association of these novel SNPs with reproductive traits may be fruitful. 相似文献
96.
Daya Ram BHUSAL Kishor Chandra GHIMIRE Rekha UPADHYAY Mahadev BISTA Bhupendra KUMAR 《昆虫学报》1950,63(9):1117-1124
【目的】本研究旨在弄清楚生态气候因子是否影响尼泊尔银胶菊Parthenium hysterophorus盛产区中银胶菊叶甲Zygogramma bicolorata成虫后代的形态学测量参数和基础生物学。【方法】 从尼泊尔Kathmandu (24℃, 海拔1 400 m, 温带气候), Chitwan (25℃, 海拔415 m, 热带或亚热带气候)和Mahendranagar (34℃, 海拔229 m, 湿润 亚热带气候)地区采集银胶菊叶甲成虫,在最适室内条件下评估各生态气候区中其F1代4龄幼虫和雌成虫的取食特征。我们假定在自由取食和最适非生物条件下饲养的后代将不会受到食物和气温的间接影响,不管亲本属于哪一生态气候区,后代利用食物的能力一致。【结果】然而,我们发现,尽管在最适条件下饲养,银胶菊叶甲后代的体型和取食特征与其亲本相似。体型大的亲本(来自Kathmandu地区),其后代体型也大,但是其食物利用效率比体型小的亲本(来自Chitwan
和Mahendranagar地区)所产后代小。这3个生态气候区中,与幼虫相比正在发育的雌成虫均表现出体重增加而食物利用效率降低。【结论】这些发现说明,食物和最适非生物条件的间接影响可能不影响银胶菊叶甲后代的表型可塑性,后代的体型和取食特征与亲本相似。发生的可遗传的变化可能是由于种内的遗传多样性。我们期望这些发现有助于理解气候变化背景下银胶菊叶甲成虫的表型可塑性、分布格局和取食行为。 相似文献
97.
John D. Williams Son T. Nguyen Shen Gu Xiaoyuan Ding Michelle M. Butler Tommy F. Tashjian Timothy J. Opperman Rekha G. Panchal Sina Bavari Norton P. Peet Donald T. Moir Terry L. Bowlin 《Bioorganic & medicinal chemistry》2013,21(24):7790-7806
The prevalence of drug-resistant bacteria in the clinic has propelled a concerted effort to find new classes of antibiotics that will circumvent current modes of resistance. We have previously described a set of bisamidine antibiotics that contains a core composed of two indoles and a central linker. The first compounds of the series, MBX 1066 and MBX 1090, have potent antibacterial properties against a wide range of Gram-positive and Gram-negative bacteria. We have conducted a systematic exploration of the amidine functionalities, the central linker, and substituents at the indole 3-position to determine the factors involved in potent antibacterial activity. Some of the newly synthesized compounds have even more potent and broad-spectrum activity than MBX 1066 and MBX 1090. 相似文献
98.
Anulekha Mary John George Priya Doss C Andrew Ebenazer Mandalam Subramaniam Seshadri Aravindan Nair Simon Rajaratnam Rekha Pai 《PloS one》2013,8(4)
Various missense mutations in the VHL gene have been reported among patients with familial bilateral pheochromocytoma. However, the p.Arg82Leu mutation in the VHL gene described here among patients with familial bilateral pheochromocytoma, has never been reported previously in a germline configuration. Interestingly, long-term follow-up of these patients indicated that the mutation might have had little impact on the normal function of the VHL gene, since all of them have remained asymptomatic. We further attempted to correlate this information with the results obtained by in silico analysis of this mutation using SIFT, PhD-SNP SVM profile, MutPred, PolyPhen2, and SNPs&GO prediction tools. To gain, new mechanistic insight into the structural effect, we mapped the mutation on to 3D structure (PDB ID 1LM8). Further, we analyzed the structural level changes in time scale level with respect to native and mutant protein complexes by using 12 ns molecular dynamics simulation method. Though these methods predict the mutation to have a pathogenic potential, it remains to be seen if these patients will eventually develop symptomatic disease. 相似文献
99.
Harinder Singh Oberoi Rekha Rawat Bhupinder Singh Chadha 《Antonie van Leeuwenhoek》2014,105(1):119-134
Fungi isolated from partially decayed wood log samples showing characteristic diversity for spore colour, colony morphology and arrangement of spores were assessed for cellulolytic enzyme production. Isolates showing a cellulolytic index of ≥2.0 were assayed for filter paper (FP) cellulase and β-glucosidase (BGL) production. Molecular characterization confirmed the identity of the selected cellulolytic isolate as a strain of Aspergillus niger (A. niger HN-2). Addition of 2 % (w/v) urea enhanced FP and BGL activity by about 20 and 60 %, respectively. Validation studies conducted at parameters (29 °C, pH 5.4, moisture content 72 % and 66 h) optimized through response surface methodology in a solid-state static tray fermentation resulted in FP, BGL, cellobiohydrolase I (CBHI), endoglucanase (EG), xylanase activity and protein content of 25.3 FPU/g ds, 750 IU/g ds, 13.2 IU/g ds, 190 IU/g ds, 2890 IU/g ds and 0.9 mg/ml, respectively. In comparison, A. niger N402 which is a model organism for growth and development studies, produced significantly lower FP, BGL, CBHI, EG, xylanase activity and protein content of 10.0 FPU/g ds, 100 IU/g ds, 2.3 IU/g ds, 50 IU/g ds, 500 IU/g ds and 0.75 mg/ml, respectively under the same process conditions as were used for A. niger HN-2. Process optimization led to nearly 1.8- and 2.2-fold increase in FP and BGL activity, respectively showing promise for cellulase production by A. niger HN-2 at a higher scale of operation. Zymogram analysis revealed two isoforms each for EG and cellobiohydrolase and three isoforms for BGL. Crude cellulase complex produced by A. niger HN-2 exhibited thermostability under acidic conditions showing potential for use in biofuel industry. 相似文献
100.
William Horton Abha Sood Swarada Peerannawar Nandor Kugyela Aditya Kulkarni Rekha Tulsan Chris D. Tran Jessica Soule Harry LeVine Béla Török Marianna Török 《Bioorganic & medicinal chemistry letters》2017,27(2):232-236
The design, synthesis and assessment of β-carboline core-based compounds as potential multifunctional agents against several processes that are believed to play a significant role in Alzheimer’s disease (AD) pathology, are described. The activity of the compounds was determined in Aβ self-assembly (fibril and oligomer formation) and cholinesterase (AChE, BuChE) activity inhibition, and their antioxidant properties were also assessed. To obtain insight into the mode of action of the compounds, HR-MS studies were carried out on the inhibitor-Aβ complex formation and molecular docking was performed on inhibitor-BuChE interactions. While several compounds exhibited strong activities in individual assays, compound 14 emerged as a promising multi-target lead for the further structure-activity relationship studies. 相似文献