Two‐dimensional proteome reference map for the radiation‐resistant bacterium Deinococcus geothermalis

2‐DE reference maps for Deinococcus geothermalis cytosolic and cell envelope proteomes were constructed. In total, 403 spots were identified as 299 different proteins. Unique in the proteomes were four subunits of V‐type ATPase and Deinococcus specific proteins constituting one‐fourth of cell envelope proteome. The cytoplasmic proteome included enzymes of the central carbon metabolism, chaperones, enzymes of protein and DNA repair, and oxidative stress. A total of 34 abundant proteins with unknown function may relate to the extreme stress tolerance of D. geothermalis.     

High-performance liquid chromatographic analysis of phlorotannins from the brown alga Fucus vesiculosus

Separating individual compounds by HPLC represents an effective method for the detection and quantification of phenolic compounds and has been widely utilised. However, phlorotannins are commonly quantified using colorimetric methods, as the total amount of the whole compound group. In the present paper the separation of a set of individual soluble phlorotannins from the phenolic crude extract of Fucus vesiculosus was achieved by HPLC with UV photodiode array detection. Different gradient programs for reversed- and normal-phase HPLC methods were developed and tested. Normal-phase (NP) conditions with a silica stationary phase and a mobile phase with a linear gradient of increasing polarity were found to separate 16 individual components of the phenolic extract. The suitability of the NP-HPLC method for mass spectrometric application was preliminarily tested. Sample preparation was found to be a critical step in the analysis owing to the rapid oxidation of phlorotannins; ascorbic acid was used as an antioxidant.     

Developmental origins of physical fitness: the Helsinki Birth Cohort Study

Background

Cardiorespiratory fitness (CRF) is a major factor influencing health and disease outcomes including all-cause mortality and cardiovascular disease. Importantly CRF is also modifiable and could therefore have a major public health impact. Early life exposures play a major role in chronic disease development. Our aim was to explore the potential prenatal and childhood origins of CRF in later life.

Methods/Principal Findings

This sub-study of the HBCS (Helsinki Birth Cohort Study) includes 606 men and women who underwent a thorough clinical examination and participated in the UKK 2-km walk test, which has been validated against a maximal exercise stress test as a measure of CRF in population studies. Data on body size at birth and growth during infancy and childhood were obtained from hospital, child welfare and school health records. Body size at birth was not associated with adult CRF. A 1 cm increase in height at 2 and 7 years was associated with 0.21 ml/kg/min (95% CI 0.02 to 0.40) and 0.16 ml/kg/min (95% CI 0.03 to 0.28) higher VO_2max, respectively. Adjustment for adult lean body mass strengthened these findings. Weight at 2 and 7 years and height at 11 years became positively associated with CRF after adult lean body mass adjustment. However, a 1 kg/m² higher BMI at 11 years was associated with −0.57 ml/kg/min (95% CI −0.91 to −0.24) lower adult VO_2max, and remained so after adjustment for adult lean body mass.

Conclusion/Significance

We did not observe any significant associations between body size at birth and CRF in later life. However, childhood growth was associated with CRF in adulthood. These findings suggest, importantly from a public point of view, that early growth may play a role in predicting adult CRF.     

Ovary architecture of two branchiobdellid species and Acanthobdella peledina (Annelida, Clitellata)

The aim of this study was to present data about ovary organization and oogenesis in two small groups of clitellate annelids, i.e. in representatives of Acanthobdellida (Acanthobdella peledina) and Branchiobdellida (Branchiobdella pentodonta and Branchiobdella parasitica), and to compare them to ovaries known from true leeches and oligochaetous clitellates. In A. peledina, the ovaries have the form of elongated cords, termed ovary cords, and are enveloped by coelomic sacs, the so-called ovisacs. The ovisacs are paired and each one contains only one ovary cord. The morphology and structure of the ovary cords depend on the maturity level of the animal. In young specimens the ovary cords are short and contain mainly oogonial cells and germ cells entering meiosis. Oogonia divide mitotically without full cytokineses, and as a result germ-line cysts are formed. As the animals grow, the cords become more elongated and the germ cells within the cords differentiate into nurse cells and oocytes. Oocytes gather cell organelles and, finally, detach from the ovary cord and float freely in the ovisac lumen.In both examined branchiobdellidans the ovaries are also paired. They are short and conical and are not enclosed within ovisacs. The narrow end of each ovary is connected to the intersegmental septum via a ligament, whereas the outermost (broad) end of the ovary extends freely into the coelom. The ovaries are polarized. Their narrow ends contain oogonia, whereas nurse cells and growing oocytes, gradually projecting from the ovary, can be found in their middle and outermost parts. Early vitellogenic oocytes detach from the ovary and float freely in the coelom.In all of the species studied, the ovaries are made up of germ-line cysts associated with somatic (follicular) cells. The architecture of a germ-line cyst is exactly the same as in other clitellate annelids that have been studied to date. Each germ cell in a cyst has one stable cytoplasmic bridge connecting it with a central anuclear cytoplasmic mass, a cytophore. The fate of germ cells constituting cysts is diverse. The majority of the cells withdraw from meiosis and become nurse cells; only a few continue meiosis, grow and become oocytes. The meroistic mode of oogenesis is suggested. We suggest also that the formation of germ-line cysts and ovary meroism should be regarded as basal conditions for all Clitellata. The occurrence of ovisacs enveloping the ovaries in A. peledina and Hirudinida is regarded as a synapomorphy of both groups, whereas ovaries found in B. pentodonta and B. parasitica have no ovisacs and resemble ovaries described in Oligochaeta sensu stricto.     

Lower conditioning leisure-time physical activity in young adults born preterm at very low birth weight

Background

Adults born preterm at very low birth weight (VLBW, <1500 g) have elevated levels of risk factors for cardiovascular diseases and type 2 diabetes. Preliminary observations suggest that this could partly be explained by lower rates of physical activity. The aim of this study was to assess physical activity in healthy young adults born preterm at very low birth weight compared with term-born controls.

Methodology/Principal Findings

We studied 94 unimpaired young adults, aged 21–29 years, born at VLBW and 101 age-, sex-, and birth hospital-matched term-born controls from one regional center in Southern Finland. The participants completed a validated 30-item 12-month physical activity questionnaire and the NEO-Personality Inventory based on the Big Five taxonomy, the most commonly used classification of personality traits. Yearly frequency, total time, total volume and energy expenditure of conditioning and non-conditioning leisure-time physical activity (LTPA) and commuting physical activity were compared between VLBW and term-born subjects. A subset of participants underwent dual-energy x-ray absorptiometry for body composition measurement. Data were analyzed by multiple linear regression. Compared with controls, VLBW participants had lower frequency [−38.5% (95% CI; −58.9, −7.7)], total time [−47.4% (95% CI; −71.2, −4.1)], total volume [−44.3% (95% CI; −65.8, −9.2)] and energy expenditure [−55.9% (95% CI; −78.6, −9.4)] of conditioning LTPA when adjusted for age, sex, body mass index, smoking, parental education and personality traits. Adjusting for lean body mass instead of body mass index attenuated the difference. There were no differences in non-conditioning LTPA or commuting physical activity.

Conclusions/Significance

Compared with term-born controls, unimpaired VLBW adults undertake less frequent LTPA with lower total time and volume of exercise resulting in lower energy expenditure. Differences in personality that exist between the VLBW and term-born groups do not seem to explain this association.     

Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions

The human intestinal tract is colonized by microbial communities that show a subject-specific composition and a high-level temporal stability in healthy adults. To determine whether this is reflected at the functional level, we compared the faecal metaproteomes of healthy subjects over time using a novel high-throughput approach based on denaturing polyacrylamide gel electrophoresis and liquid chromatography-tandem mass spectrometry. The developed robust metaproteomics workflow and identification pipeline was used to study the composition and temporal stability of the intestinal metaproteome using faecal samples collected from 3 healthy subjects over a period of six to twelve months. The same samples were also subjected to DNA extraction and analysed for their microbial composition and diversity using the Human Intestinal Tract Chip, a validated phylogenetic microarray. Using metagenome and single genome sequence data out of the thousands of mass spectra generated per sample, approximately 1,000 peptides per sample were identified. Our results indicate that the faecal metaproteome is subject-specific and stable during a one-year period. A stable common core of approximately 1,000 proteins could be recognized in each of the subjects, indicating a common functional core that is mainly involved in carbohydrate transport and degradation. Additionally, a variety of surface proteins could be identified, including potential microbes-host interacting components such as flagellins and pili. Altogether, we observed a highly comparable subject-specific clustering of the metaproteomic and phylogenetic profiles, indicating that the distinct microbial activity is reflected by the individual composition.     

Does a non-invasive method – latrine surveys – reveal habitat preferences of raccoon dogs and badgers?

We aimed to examine whether habitat preferences of raccoon dogs Nyctereutes procyonoides and badgers Meles meles can be revealed by using a non-invasive method, latrine surveys. We searched for latrines of these carnivores with scat detection dogs in SW Finland. We compared the results of latrine surveys with the results of a radio-tracking study conducted simultaneously in the same area. Our results showed that latrine surveys and radio-tracking gave fairly similar results: both methods revealed that raccoon dogs favoured deciduous forests, open woodland and reed beds but avoided fields, and badgers favoured deciduous and pine forests but avoided fields, gardens and reed beds. Latrines of both species were often located in the core areas but also along home range borders. Latrine survey revealed possible competition for space between the native badgers and alien raccoon dogs. Latrine survey is a non-invasive method, which gives accurate location points of animals. It could be developed further by combining it with bait-marking and by training the dogs to show us other signs of animals besides latrines.     

Plankton community of a polyhumic lake with and without Daphnia longispina (Cladocera)

The impact of Daphnia longispina (Cladocera) on the plankton food web was studied in a polyhumic lake where this species comprised almost all zooplankton biomass. Plastic enclosures (volume 7 m³) were inserted into the lake retaining the initial water stratification except that in one enclosure zooplankton was removed. After the removal of Daphniaa rotifer, Keratella cochlearis, ciliates and heterotrophic nanoflagellates increased markedly and the density and biomass of bacteria decreased. Edible algal species, Cryptomonas rostratiformisand three small chrysophytes,Ochromonas, Pedinella and Spinifermonas, took advantage of the removal of Daphnia, while more grazing-resistant species declined. In spite of the changes in the species composition of phytoplankton, the removal of Daphnia did not affect the biomass, primary production or respiration of plankton. The results implied that the density of heterotrophic flagellates and ciliates was controlled by Daphnia, but in its absence the former took its role as the bacterial grazers.     

The effect of host mycorrhizal status on host plant–parasitic plant interactions

Two pot experiments were conducted to examine three-level interactions between host plants, mycorrhizal fungi and parasitic plants. In a greenhouse experiment, Poa annua plants were grown in the presence or absence of an AM fungus (either Glomus lamellosum V43a or G. mosseae BEG29) and in the presence or absence of a root hemiparasitic plant (Odontites vulgaris). In a laboratory experiment, mycorrhizal infection (Glomus claroideum BEG31) of Trifolium pratense host plants (mycorrhizal versus non-mycorrhizal) was combined with hemiparasite infection (Rhinanthus serotinus) of the host (parasitized versus non-parasitized). Infection with the two species of Glomus had no significant effect on the growth of P. annua, while hemiparasite infection caused a significant reduction in host biomass. Mycorrhizal status of P. annua hosts (i.e. presence/absence of AM fungus) affected neither the biomass nor the number of flowers produced by the attached O. vulgaris plants. Infection with G. claroideum BEG31 greatly increased the biomass of T. pratense, but hemiparasite infection had no effect. The hemiparasitic R. serotinus plants attached to mycorrhizal hosts had higher biomass and produced more flowers than plants growing with non-mycorrhizal hosts. Roots of T. pratense were colonized by the AM fungus to an extent independent of the presence or absence of the hemiparasite. Our results confirm earlier findings that the mycorrhizal status of a host plant can affect the performance of an attached root hemiparasite. However, improvement of the performance of the parasitic plant following attachment to a mycorrhizal host depends on the extent to which the AM fungi is able to enhance the growth of the host. Accepted: 23 February 2001