Tooth pulp tissue promotes neurite outgrowth from rat trigeminal ganglia in vitro

The mammalian tooth pulp becomes innervated by nociceptive and sympathetic axons relatively late during development, when part of the root has formed. In the adult, regenerating axons from an injured tooth nerve or sprouting axons from uninjured nerves in the vicinity rapidly reinnervate denervated tooth pulps. These observations indicate that tooth pulp tissue can use molecular factors to attract pulpal axons from local nerve trunks. The present study examines the hypothesis that these factors include nerve growth factor (NGF), brain derived neurotrophic factor (BDNF) and glial cell line derived neurotrophic factor (GDNF). Explants of trigeminal ganglia from neonatal rat pups showed a distinct neurite outgrowth when co-cultured with pulpal explants collected from molar teeth of 12-day old pups, or after application of a pulpal extract. Control cultures, containing single ganglionic explants, or explants co-cultured with heat-treated pulpal tissue, exhibited a sparse neurite outgrowth. Exogenous NGF and/or GDNF, but not exogenous BDNF, stimulated neurite outgrowth from ganglionic explants. Unexpectedly, application of antibodies against NGF, BDNF and/or GDNF to co-cultures of ganglionic and pulpal explants did not inhibit neuritogenesis. Control experiments showed that IgG molecules readily penetrate the gel used for culture and that even very high concentrations of NGF and GDNF antibodies in combination failed to block neurite growth. On the basis of these data we suggest that other as yet unknown neurite-promoting factors might be present and active in TG/pulpal co-cultures.     

Phytoplankton and Epiphyte Development and Their Shading Effect on Submerged Macrophytes in Lakes of Different Nutrient Status

The annual mean light intensity at the depth limit of the Littorella vegetation was 24–33% of the subsurface light intensity, despite large variations in each attenuation component (lake water, phytoplankton, and epiphytes). In oligotrophic, silicate-poor lakes, the light attenuation above the submerged vegetation was dominated by the water itself, which accounted for 65–72% of the total attenuation. Phytoplankton and epiphytes were equal in importance to each other. In oligotrophic, silicate-rich lakes and lakes receiving a nitrogen supply above background level, the epiphytes were more abundant, accounting for about 50% of the light attenuation. In one lake with a high nutrient supply, the epiphytes were responsible for 86% of the light attenuation. A new method of measuring the effect of shading by the epiphytic community on submerged macrophytes is presented. The light attenuation caused by the phytoplankton and the epiphytes was investigated and related to the depth distribution of the submerged angiosperm, Littorella uniflora. It is shown that the biomass of the epiphytes increased more than the biomass of the phytoplankton in response to an external or internal nutrient loading. Shading by epiphytes is of decisive importance for the depth distribution of Littorella at increasing nutrient supply.     

Water‐level fluctuations affect sediment properties,carbon flux and growth of the isoetid Littorella uniflora in oligotrophic lakes

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Epiphyte shading: Its role in resulting depth distribution of submerged aquatic macrophytes

The biomass of epiphytic algae increased more than the biomass of phytoplankton with increased nutrient availability (N, P, Si) in four lakes. Large epiphyte biomasses on the submerged macrophyte,Littorella uniflora, reduce light attenuation more than phytoplankton did. High values of shading by epiphytes correspond with a reduction in the maximum depth penetration ofLittorella by more than 1 meter.     

Variable history of land use reduces the relationship to specific habitat requirements of a threatened aquatic insect

The hutchinsonian realized niche of a species is the most common tool for selecting the actions needed when restoring habitats and establishing conservation areas of species. However, defining the realized niche of a species is problematic due to variation across spatial and temporal scales. In this study we tested the hypothesis that habitat parameters defining the realized niche of a species can be derived from a regional study and that national changes in land use influence the perception of the realized niche across different landscapes. We described the realized habitat niche of the threatened dragonfly Leucorrhinia pectoralis, in four Estonian landscapes which all have undergone more than 20 years of habitat degradations. We recorded the presence/absence of L. pectoralis and measured 7 habitat variables for 140 lakes and ponds located in one restored and three un-restored landscapes. Lake size and proportion of short riparian vegetation were significantly positive parameters determining the presence of L. pectoralis across landscape types. The species was much more habitat specific in the restored landscape, with larger influence of other habitat parameters. Our data suggest that the realized niche of the species in the un-restored landscapes was constrained by the present-day habitats. The study demonstrate that if a species realized niche is derived from local distribution patterns without incorporating landscape history it can lead to an erroneous niche definition. We show that landscape restoration can provide knowledge on a species’ habitat dependencies before habitat degradation has occurred, provided that restoration mitigation reflects the former landscape characteristics.     

Pteleopsis apetala sp.nov. (Combretaceae) and the delimitation of Pteleopsis and Terminalia

Pteleopsis apetala Vollesen is described. The delimitation of Pteleopsis and Terminalia is discussed. It is proposed that the structure of the inflorescence is used as the main distinguishing character between the two genera. The new combination Pteleopsis pteleopsoides (Exell) Vollesen is proposed.     

Evaluation of 3D-Jury on CASP7 models

Background  

3D-Jury, the structure prediction consensus method publicly available in the Meta Server , was evaluated using models gathered in the 7 ^th round of the Critical Assessment of Techniques for Protein Structure Prediction (CASP7). 3D-Jury is an automated expert process that generates protein structure meta-predictions from sets of models obtained from partner servers.     

Former diversity of Ephedra (Gnetales): evidence from Early Cretaceous seeds from Portugal and North America

BACKGROUND AND AIMS: The extant species of the seed plant group Gnetales (Ephedra, Gnetum and Welwitschia) have been considered a remnant of a much greater, now extinct, diversity due to the pronounced differences in form and ecology among the genera. Until recently, this hypothesis has not been supported by evidence from the fossil record. This paper adds to the expanding information on Gnetales from the Early Cretaceous and describes coalified seeds from Barremian-Albian localities in Portugal and USA. METHODS: The fossils were extracted from sediment samples by sieving in water. Adhering mineral matrix was removed by chemical treatment. Seeds were investigated using light and scanning electron microscopy. Morphology and anatomy of the seeds were documented and compared with those of extant species. KEY RESULTS: The fossils share characters with extant Ephedra, for example papillae on the inner surface of the seed envelope and in situ polyplicate pollen grains that shed the exine during germination. They differ from extant Ephedra seeds in morphological and anatomical details as well as in their smaller size. Two new species of Ephedra are described together with one species assigned to a new genus of Gnetales. Other Ephedra-like seeds, for which pollen and critical morphological details are currently unknown, are also present in the samples. CONCLUSIONS: These Cretaceous seeds document that key reproductive characters and pollen germination processes have remained unchanged within Ephedra for about 120 million years or more. There is sufficient variety in details of morphology to suggest that a diversity of Ephedra and Ephedra-like species were present in the Early Cretaceous flora. Their presence in Portugal and eastern North America indicates that they were widespread on the Laurasian continent. The fossil seeds are similar to seeds of Erdtmanithecales and this supports the previously suggested relationship between Erdtmanithecales and Gnetales.     

Clusterin in cerebrospinal fluid: analysis of carbohydrates and quantification of native and glycosylated forms

Clusterin is suggested to be involved in the pathogenesis of Alzheimer's disease. Clusterin expression is increased in brain tissue in affected regions of Alzheimer patients, and intense clusterin staining is found in both senile plaques and in neuronal and glia cells. In contrast, the cerebrospinal fluid level of clusterin in Alzheimer patients has, thus far, been found unchanged. Clusterin is a glycosylated protein, and an alteration of its glycosylation in Alzheimer's disease might influence accurate quantification in cerebrospinal fluid through interference of antibody binding to the protein. Using enzymatic deglycosylation of clusterin isolated from cerebrospinal fluid, we found that the carbohydrates attached to clusterin were of the N-linked type and sialic acids. Based on this finding, cerebrospinal fluid samples from Alzheimer patients (n = 99) and controls (n = 39) were analysed. The samples were treated with peptide: N-glycanase F, cleaving off N-linked carbohydrates, and clusterin was quantified before and after deglycosylation using a new sandwich enzyme-linked immunosorbent assay. Clusterin was significantly increased in Alzheimer patients, in both native (7.17 ± 2.43 AU versus 5.73 ± 2.09 AU; p = 0.002), and deglycosylated samples (12.19 ± 5.00 AU versus 9.68 ± 4.38 AU; p = 0.004). Deglycosylation led to increased measured levels of clusterin by 70% (p < 0.001) in Alzheimer patients and 67% (p < 0.001) in controls. These findings indicate that glycosylation of proteins may interfere with their quantification. The results show that clusterin is significantly increased in cerebrospinal fluid from Alzheimer patients as a group, supporting that clusterin might be involved in the pathogenesis of Alzheimer's disease. However, the individual clusterin levels overlap between the two groups, and thus cerebrospinal fluid clusterin measurement is not suitable as a biochemical marker in the diagnosis of Alzheimer's disease.