Desert breath—How fog promotes a novel type of soil biocenosis,forming the coastal Atacama Desert’s living skin

The Atacama Desert is the driest non‐polar desert on Earth, presenting precarious conditions for biological activity. In the arid coastal belt, life is restricted to areas with fog events that cause almost daily wet–dry cycles. In such an area, we discovered a hitherto unknown and unique ground covering biocenosis dominated by lichens, fungi, and algae attached to grit‐sized (~6 mm) quartz and granitoid stones. Comparable biocenosis forming a kind of a layer on top of soil and rock surfaces in general is summarized as cryptogamic ground covers (CGC) in literature. In contrast to known CGC from arid environments to which frequent cyclic wetting events are lethal, in the Atacama Desert every fog event is answered by photosynthetic activity of the soil community and thus considered as the desert's breath. Photosynthesis of the new CGC type is activated by the lowest amount of water known for such a community worldwide thus enabling the unique biocenosis to fulfill a variety of ecosystem services. In a considerable portion of the coastal Atacama Desert, it protects the soil from sporadically occurring splash erosion and contributes to the accumulation of soil carbon and nitrogen as well as soil formation through bio‐weathering. The structure and function of the new CGC type are discussed, and we suggest the name grit–crust. We conclude that this type of CGC can be expected in all non‐polar fog deserts of the world and may resemble the cryptogam communities that shaped ancient Earth. It may thus represent a relevant player in current and ancient biogeochemical cycling.     

刺楸年轮中重金属含量动态变化及富集特性

为探索刺楸对受污染土壤重金属的富集和修复效应, 以南京栖霞山的乡土树种刺楸及其根际周边土壤为研究对象, 截取其根基部年轮盘及根际土壤样本, 采用ICP-AES法测定年轮及土壤样本中重金属(Cu、Cd、Cr、Mn、Ni、Pb、Zn)元素含量。结果表明: 栖霞山样地中的土壤受Mn、Pb和Zn污染最为严重, 存在Cu、Cd、Mn、Pb、Zn元素的高度复合污染, Cd、Cr、Cu、Ni、Zn在土壤和年轮中存在相关性, Mn和Pb则没有表现出明显的相关性; 刺楸修复受Cd、Mn、Pb、Zn污染的土壤效果并不显著, 更适用于Cr、Cu、Ni污染的土壤修复; 鉴于Cu元素含量变化特征, 刺楸也可以作为反映当地污染历史的记录载体; 刺楸年轮中的重金属元素之间存在交互作用, 其中Cd与Zn元素含量高度相关(r=0.984, p<0.01), 在刺楸年轮吸收重金属元素的过程中, Cu与Cd、Cr、Mn、Zn元素具有协同作用, Mn元素对其他元素有一定的拮抗作用。     

Knockdown of DNA‐binding protein A enhances the chemotherapy sensitivity of colorectal cancer via suppressing the Wnt/β‐catenin/Chk1 pathway

DNA‐binding protein A (dbpA) is reported to be upregulated in many cancers and associated with tumor progress. The present study aimed to investigate the role of dbpA in 5‐fluorouracil (5‐FU)‐resistant and oxaliplatin (L‐OHP)‐resistant colorectal cancer (CRC) cells. We found that 5‐FU and L‐OPH treatment promoted the expression of dbpA. Enhanced dbpA promoted the drug resistance of SW620 cells to 5‐FU and L‐OHP. DbpA knockdown inhibited cell proliferation, induced cell apoptosis, and cell cycle arrested in SW620/5‐FU and SW620/L‐OHP cells. Besides, dbpA short hairpin RNA (shRNA) enhanced the cytotoxicity of 5‐FU and L‐OHP to SW620/5‐FU and SW620/L‐OHP cells. Meanwhile, dbpA shRNA inhibited the activation of the Wnt/β‐catenin pathway that induced by 5‐FU stimulation in SW620/5‐FU cells. Activation of the Wnt/β‐catenin pathway or overexpression of checkpoint kinase 1 (Chk1) abrogated the promoting effect of dbpA downregulation on 5‐FU sensitivity of CRC cells. Importantly, downregulation of dbpA suppressed tumor growth and promoted CRC cells sensitivity to 5‐FU in vivo. Our study indicated that the knockdown of dbpA enhanced the sensitivity of CRC cells to 5‐FU via Wnt/β‐catenin/Chk1 pathway, and DbpA may be a potential therapeutic target to sensitize drug resistance CRC to 5‐FU and L‐OHP.     

Threshold responses of riverine fish communities to land use conversion across regions of the world

The growing human enterprise has sparked greater interest in identifying ecological thresholds in land use conversion beyond which populations or communities demonstrate abrupt nonlinear or substantive change in species composition. Such knowledge remains fundamental to understanding ecosystem resilience to environmental degradation and informing land use planning into the future. Confronting this challenge has been largely limited to inferring thresholds in univariate metrics of species richness and indices of biotic integrity and has largely ignored how land use legacies of the past may shape community responses of today. By leveraging data for 13,069 riverine sites from temperate, subtropical, and boreal climate zones on four continents, we characterize patterns of community change along diverse gradients of urbanization and agricultural land use, and identity threshold values beyond which significant alterations in species composition exists. Our results demonstrate the apparent universality by which freshwater fish communities are sensitive to even low levels of watershed urbanization (range of threshold values: 1%–12%), but consistently higher (and more variable) levels of agricultural development (2%–37%). We demonstrated that fish community compositional thresholds occurred, in general, at lower levels of watershed urbanization and agriculture when compared to threshold responses in species richness. This supports the notion that aggregated taxon‐specific responses may better reflect the complexity of assemblage responses to land use development. We further revealed that the ghost of land use past plays an important role in moderating how current‐day fish communities respond to land use intensification. Subbasins of the United States experiencing greater rates of past land use change demonstrated higher current‐day thresholds. Threshold responses of community composition, such as those identified in our study, illustrate the need for globally coordinated efforts to prioritize country‐specific management and policy initiatives that ensure that freshwater fish diversity is not inevitably lost in the future.     

Ultra‐high α‐linolenic acid accumulating developmental defective embryo was rescued by lysophosphatidic acid acyltransferase 2

For decades, genetic engineering approaches to produce unusual fatty acids (UFAs) in crops has reached a bottleneck, including reduced seed oil production and seed vigor. Currently, plant models in the field of research are primarily used to investigate defects in oil production and seedling development, while the role of UFAs in embryonic developmental defects remains unknown. In this study, we developed a transgenic Arabidopsis plant model, in which the embryo exhibits severely wrinkled appearance owing to α‐linolenic acid (ALA) accumulation. RNA‐sequencing analysis in the defective embryo suggested that brassinosteroid synthesis, FA synthesis and photosynthesis were inhibited, while FA degradation, endoplasmic reticulum stress and oxidative stress were activated. Lipidomics analysis showed that ultra‐accumulated ALA is released from phosphatidylcholine as a free FA in cells, inducing severe endoplasmic reticulum and oxidative stress. Furthermore, we identified that overexpression of lysophosphatidic acid acyltransferase 2 rescued the defective phenotype. In the rescue line, the pool capacity of the Kennedy pathway was increased, and the esterification of ALA indirectly to triacylglycerol was enhanced to avoid stress. This study provides a plant model that aids in understanding the molecular mechanism of embryonic developmental defects and generates strategies to produce higher levels of UFAs.     

Ptr1 evolved convergently with RPS2 and Mr5 to mediate recognition of AvrRpt2 in diverse solanaceous species

The Ptr1 (Pseudomonas tomato race 1) locus in Solanum lycopersicoides confers resistance to strains of Pseudomonas syringae pv. tomato expressing AvrRpt2 and Ralstonia pseudosolanacearum expressing RipBN. Here we describe the identification and phylogenetic analysis of the Ptr1 gene. A single recombinant among 585 F2 plants segregating for the Ptr1 locus was discovered that narrowed the Ptr1 candidates to eight nucleotide‐binding leucine‐rich repeat protein (NLR)‐encoding genes. From analysis of the gene models in the S. lycopersicoides genome sequence and RNA‐Seq data, two of the eight genes emerged as the strongest candidates for Ptr1. One of these two candidates was found to encode Ptr1 based on its ability to mediate recognition of AvrRpt2 and RipBN when it was transiently expressed with these effectors in leaves of Nicotiana glutinosa. The ortholog of Ptr1 in tomato and in Solanum pennellii is a pseudogene. However, a functional Ptr1 ortholog exists in Nicotiana benthamiana and potato, and both mediate recognition of AvrRpt2 and RipBN. In apple and Arabidopsis, recognition of AvrRpt2 is mediated by the Mr5 and RPS2 proteins, respectively. Phylogenetic analysis places Ptr1 in a distinct clade compared with Mr5 and RPS2, and it therefore appears to have arisen by convergent evolution for recognition of AvrRpt2.     

Overexpression of the persimmon abscisic acid β‐glucosidase gene (DkBG1) alters fruit ripening in transgenic tomato

β‐Glucosidases (BG) are present in many plant tissues. Among these, abscisic acid (ABA) β‐glucosidases are thought to take part in the adjustment of cellular ABA levels, however the role of ABA‐BG in fruits is still unclear. In this study, through RNA‐seq analysis of persimmon fruit, 10 full‐length DkBG genes were isolated and were all found to be expressed. In particular, DkBG1 was highly expressed in persimmon fruits with a maximum expression 95 days after full bloom (DAFD). We verified that, in vitro, DkBG1 protein can hydrolyze ABA‐glucose ester (ABA‐GE) to release free ABA. Compared with wild‐type, tomato plants that overexpressed DkBG1 significantly upregulated the expression of ABA receptor PYL3/7 genes and showed typical symptoms of ABA hypersensitivity in fruits. DkBG1 overexpression (DkBG1‐OE) accelerated fruit ripening onset by 3–4 days by increasing ABA levels at the pre‐breaker stage and induced early ethylene release compared with wild‐type fruits. DkBG1‐OE altered the expression of ripening regulator NON‐RIPENING (NOR) and its target genes; this in turn altered fruit quality traits such as coloration. Our results demonstrated that DkBG1 plays an important role in fruit ripening and quality by adjusting ABA levels via hydrolysis of ABA‐GE.     

锌指蛋白ZFP580在全反式维甲酸调节大鼠血管平滑肌细胞迁移中的作用及机制

目的:探讨锌指基因ZFP580在全反式维甲酸(ATRA)调节VSMCs迁移功能中的作用及其机制。方法:分离,培养并鉴定大鼠主动脉VSMCs;分别予以0、5、10、20 μmol/L ATRA刺激VSMCs 24h,以0 μmol/L ATRA组为对照组,观察不同溶度ATRA刺激不同时间对VSMCs迁移能力的影响或给予0、20 μmol/L ATRA刺激VSMCs 24、48、72h,观察ATRA刺激不同时间对VSMCs迁移能力的影响;QPCR及Western blot检测ATRA刺激VSMCs后ZFP580的mRNA和蛋白表达变化;应用ERK抑制剂PD98059抑制ERK的蛋白表达,观察ERK信号蛋白表达变化对ATRA刺激后ZFP580蛋白表达的影响;腺病毒转染技术获得过表达或低表达ZFP580的VSMCs,QPCR及Western blot检测MMP-2和MMP-9、ZFP580蛋白和mRNA表达水平。结果:分离的VSMCs在培养10d后,免疫荧光显示平滑肌细胞特异性标记物SM22α抗体阳性。与对照组相比,5、10、20 μmol/L ATRA预刺激分别降低了32%、43%和59%的VSMCs迁移能力;20 μmol/L ATRA刺激VSMCs与对照组相比,在24、48、72h分别降低49%、36%和22%细胞迁移能力。ZFP580的mRNA和蛋白表达随着ATRA刺激溶度的增加和刺激时间的延长而升高。ERK在ATRA刺激15min即显著升高,运用ERK抑制剂PD98059(20 μmol/L)预处理抑制ERK蛋白表达并降低了ATRA诱导ZFP580的蛋白表达。过表达ZFP580降低MMP-2和MMP-9的mRNA和蛋白表达,反之,低表达ZFP580则上调了MMP-2和MMP-9的mRNA和蛋白表达。结论:ATRA可通过ERK信号通路上调ZFP580的表达,而ZFP580通过调控MMP-2和MMP-9的表达参与ATRA对VSMCs迁移的抑制作用。