甜瓜细菌性斑点病拮抗菌P-13的鉴定及其抑菌物质的初步研究

从新疆甜瓜根际土壤中分离到1株甜瓜细菌性斑点病拮抗放线菌P-13, 根据其形态学、生理特征和16S rRNA序列分析, 鉴定该菌株为娄彻氏链霉菌(Streptomyces rochei)。琼脂扩散法生物活性研究表明, 其发酵液对细菌性果腐病菌(Acidovorax avenae subsp. citrull)BFB、细菌性角斑病菌(Pseudomonas syringae pv. Lachrymans)P4的抑菌圈直径分别为19 mm和17 mm以上; 发酵液中抑菌物质主要为胞外代谢物, 不溶于石油醚, 乙醚, 乙酸乙酯等有机溶剂。在100°C处理10 min、pH 6处理6 h或紫外线照射7 h, 该物质抑菌活性不变。纸层析结果表明, 该物质主要为碱性水溶性物质。     

球孢白僵菌高渗适应性相关基因Bbmpd的克隆与表达分析

【目的】克隆与球孢白僵菌(Beauveria bassiana)的高渗适应性相关基因,并对其功能进行分析,以揭示球孢白僵菌对高渗等逆境适应的分子机理。【方法】利用YADE法克隆T-DNA的侧翼序列并进行基因组步行,获得突变基因的全长及上游序列;利用RT-PCR技术分析突变基因的表达特性以及与Bbhog1的关系;采用同源重组技术敲除Bbmpd基因。【结果】克隆得到插入突变基因及其上、下游序列全长3037bp。该基因与编码球孢白僵菌的1-磷酸甘露醇脱氢酶基因相似性为98%。Bbmpd的表达受高渗环境(0.8mol/L NaCl)的诱导,受Bbhog1信号途径的激活调节,Bbhog1缺失导致Bbmpd表达下调。Bbmpd缺失突变体在高渗胁迫下的生长受到明显抑制。Bbmpd缺失不影响球孢白僵菌在查氏培养基上的生长和产孢。【结论】由T-DNA突变体克隆了编码球孢白僵菌1-磷酸甘露醇脱氢酶基因Bbmpd,该基因的表达受高渗环境的诱导和Bbhog1的调控,与球孢白僵菌高渗适应性相关。     

Five New Guaiane Sesquiterpenes from the Endophytic Fungus Xylaria sp. YM 311647 of Azadirachta indica

Five new guaiane sesquiterpenes, 1 – 5 , were isolated from the culture broth of the endophytic fungus Xylaria sp. YM 311647, isolated from Azadirachta indica A. Juss . The structures of these compounds were elucidated on the basis of spectroscopic analyses, and their inhibitory activities against five pathogenic fungi were evaluated. All guaiane sesquiterpenes showed moderate or weak antifungal activities in a broth microdilution assay.     

不同质量浓度NaNO3对3种微藻生长及总脂肪酸含量和组成的影响

以BG11为基本培养液,研究了不同质量浓度NaNO3(37.5～1 875.0 mg·L-1)对微藻P9(Klebsormidium sp. )、TH6(Oedocladium sp. )和CF5(Stigonema sp. )生长及总脂肪酸含量和组成的影响.结果显示,调整(减少或增加)培养液中NaNO3的质量浓度,对3种微藻的生长量及总脂肪酸含量和脂肪酸组成均有一定的影响;NaNO3的质量浓度较低(37.5或75.0 mg·L-1),3种微藻的鲜质量随培养时间的延长呈先逐渐增加然后略有降低的趋势;而在NaNO3质量浓度为150.0～1 875.0 mg·L-1的条件下,在一定的培养时间(18～33 d)内,3种微藻的鲜质量均逐渐增加;总体上看,3种微藻的生长量随NaNO3质量浓度的提高呈现逐渐增加的趋势,但仅在含1 875.0 mg·L-1 NaNO3的培养液中3种微藻的生长量高于对照(1 500.0 mg·L-1NaNO3).在含375.0 mg·L-1NaNO3的培养液中培养33 d,微藻 P9的总脂肪酸含量最高(25.39%),是对照的 1.79 倍,软脂酸、亚油酸、油酸和硬脂酸的相对含量分别是对照的2.50、2.72、2.24和2.08倍;在含37.5 mg·L-1 NaNO3的培养液中培养33 d,微藻TH6的总脂肪酸含量最高(20.69%),是对照的 1.89倍,软脂酸、亚油酸和油酸的相对含量分别是对照的3.37、1.79和1.92倍;不同处理组间微藻CF5的总脂肪酸含量及组成有一定差异,但随着NaNO3质量浓度的提高变化趋势不明显.研究结果表明,适当提高培养液中的NaNO3浓度对微藻的生长有一定的促进作用,不同种类微藻适宜的NaNO3浓度有一定的差异.综合考虑生长量和总脂肪酸含量及脂肪酸组成等因素,确定适宜于微藻P9、TH6和CF5培养的NaNO3质量浓度分别为375.0、37.5和150.0 mg·L-1.     

Profile-based string kernels for remote homology detection and motif extraction

We introduce novel profile-based string kernels for use with support vector machines (SVMs) for the problems of protein classification and remote homology detection. These kernels use probabilistic profiles, such as those produced by the PSI-BLAST algorithm, to define position-dependent mutation neighborhoods along protein sequences for inexact matching of k-length subsequences ("k-mers") in the data. By use of an efficient data structure, the kernels are fast to compute once the profiles have been obtained. For example, the time needed to run PSI-BLAST in order to build the profiles is significantly longer than both the kernel computation time and the SVM training time. We present remote homology detection experiments based on the SCOP database where we show that profile-based string kernels used with SVM classifiers strongly outperform all recently presented supervised SVM methods. We further examine how to incorporate predicted secondary structure information into the profile kernel to obtain a small but significant performance improvement. We also show how we can use the learned SVM classifier to extract "discriminative sequence motifs"--short regions of the original profile that contribute almost all the weight of the SVM classification score--and show that these discriminative motifs correspond to meaningful structural features in the protein data. The use of PSI-BLAST profiles can be seen as a semi-supervised learning technique, since PSI-BLAST leverages unlabeled data from a large sequence database to build more informative profiles. Recently presented "cluster kernels" give general semi-supervised methods for improving SVM protein classification performance. We show that our profile kernel results also outperform cluster kernels while providing much better scalability to large datasets.     

Temperature,energy metabolism,and adaptive divergence in two oyster subspecies

Comparisons of related species that have diverse spatial distributions provide an efficient way to investigate adaptive evolution in face of increasing global warming. The oyster subjected to high environmental selections is a model species as sessile marine invertebrate. This study aimed to detect the adaptive divergence of energy metabolism in two oyster subspecies from the genus Crassostrea—C. gigas gigas and C. gigas angulata—which are broadly distributed along the northern and southern coasts of China, respectively. We examined the effects of acute thermal stress on energy metabolism in two oyster subspecies after being common gardened for one generation in identical conditions. Thermal responses were assessed by incorporating physiological, molecular, and genomic approaches. Southern oysters exhibited higher fluctuations in metabolic rate, activities of key energetic enzymes, and levels of thermally induced gene expression than northern oysters. For genes involved in energy metabolism, the former displayed higher basal levels of gene expression and a more pronounced downregulation of thermally induced expression, while the later exhibited lower basal levels and a less pronounced downregulation of gene expression. Contrary expression pattern was observed in oxidative stress gene. Besides, energy metabolic tradeoffs were detected in both subspecies. Furthermore, the genetic divergence of a nonsynonymous SNP (SOD‐132) and five synonymous SNPs in other genes was identified and validated in these two subspecies, which possibly affects downstream functions and explains the aforementioned phenotypic variations. Our study demonstrates that differentiations in energy metabolism underlie the plasticity of adaptive divergence in two oyster subspecies and suggest C. gigas angulata with moderate phenotypic plasticity has higher adaptive potential to cope with exacerbated global warming.     

ITE and TCDD Differentially Regulate the Vascular Remodeling of Rat Placenta via the Activation of AhR

Vascular remodeling in the placenta is essential for normal fetal development. The previous studies have demonstrated that in utero exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD, an environmental toxicant) induces the intrauterine fetal death in many species via the activation of aryl hydrocarbon receptor (AhR). In the current study, we compared the effects of 2-(1′H-indole-3′-carbonyl)-thiazole-4-carboxylic acid methyl ester (ITE) and TCDD on the vascular remodeling of rat placentas. Pregnant rats on gestational day (GD) 15 were randomly assigned into 5 groups, and were exposed to a single dose of 1.6 and 8.0 mg/kg body weight (bw) ITE, 1.6 and 8.0 µg/kg bw TCDD, or an equivalent volume of the vehicle, respectively. The dams were sacrificed on GD20 and the placental tissues were gathered. The intrauterine fetal death was observed only in 8.0 µg/kg bw TCDD-exposed group and no significant difference was seen in either the placental weight or the fetal weight among all these groups. The immunohistochemical and histological analyses revealed that as compared with the vehicle-control, TCDD, but not ITE, suppressed the placental vascular remodeling, including reduced the ratio of the placental labyrinth zone to the basal zone thickness (at least 0.71 fold of control), inhibited the maternal sinusoids dilation and thickened the trophoblastic septa. However, no marked difference was observed in the density of fetal capillaries in the labyrinth zone among these groups, although significant differences were detected in the expression of angiogenic growth factors between ITE and TCDD-exposed groups, especially Angiopoietin-2 (Ang-2), Endoglin, Interferon-γ (IFN-γ) and placenta growth factor (PIGF). These results suggest ITE and TCDD differentially regulate the vascular remodeling of rat placentas, as well as the expression of angiogenic factors and their receptors, which in turn may alter the blood flow in the late gestation and partially resulted in intrauterine fetal death.     

流行性感冒季节性的基本原因和模型理论

流行性感冒（流感）在世界范围内每年造成（300～500）万例严重疾病和（25～50）万例死亡。流感可造成严重的公共卫生和经济问题。流感流行和爆发都是以流感季节为特征。因为与甲型流感病毒相关疾病的发病率和死亡率水平较高,因此本研究从病毒学、流行病学、生物学和数学等方面重点讨论甲型流感季节性的基本原因和模型理论。     

新疆玛纳斯热气泉免培养土壤细菌多样性分析

【目的】了解新疆玛纳斯热气泉土壤免培养细菌群落组成及多样性。【方法】采用免培养法直接从土壤样品中提取总DNA,利用细菌通用引物对土壤总DNA进行16S rDNA扩增,构建细菌16SrDNA文库。使用HaeⅢ限制性内切酶对阳性克隆进行限制性片段长度多态性分析(restriction fragment length polymorphism,RFLP),挑选具有不同酶切图谱的克隆进行测序、比对并构建16SrDNA系统发育树。【结果】从土壤细菌16S rDNA文库中随机挑选了170个阳性克隆,共得到29个不同的分类单元(operational taxonomic unit,OTU)。系统发育分析归为6个门:酸杆菌门(Acidobacteria)、放线菌门(Actinobacteria)、拟杆菌门(Bacteroidetes)、厚壁菌门(Firmicutes)、变形菌门(Proteobacteria)和浮霉菌门(Planctomycetes)。其中厚壁菌门(Firmicutes)为绝对优势类群,占整个细菌文库的71%。29个OTUs中有14条序列与GenBank中相关序列的相似性低于97%(序列长度约1.5kb),占序列总数的48%。【结论】热气泉土壤细菌种群多样性较低,但存在大量潜在细菌新种。     

Rht10基因对‘鲁麦15’农艺性状和光合生理特性的影响

利用鲁麦15、Rht10鲁麦15、Ms2鲁麦15及Ms2+Rht10鲁麦15近等基因系为试验材料,研究了Rht10基因对小麦农艺性状、净光合速率(Pn)、蒸腾速率(Tr)等光合生理特性的影响.结果表明,Rht10使小麦的挑旗、抽穗、开花期均推迟了4～5 d;Rht10对鲁麦15和Ms2鲁麦15的降秆强度分别为53.77%和53.00%,穗长显著缩短(P<0.05),千粒重显著减少,但对有效穂数无显著影响(P>0.05).含有Rht10基因的材料与不含此基因的材料之间的光合生理参数普遍存在显著差异,但在不同时期不同参数差异正负不同;在灌浆后期,Rht10对Pn有显著正效应(P<0.05);从开花期到灌浆后期,Pn与气孔导度(Gs)、胞间二氧化碳浓度(Ci)总体变化趋势相同,且相关性显著,表明Pn在一定程度上受气孔因素的限制;在灌浆中后期,Rht10对Gs有明显的正效应;在抽穗和开花期,Rht10对Tr有明显的正效应;Rht10对叶片水分利用效率(WUE)在4个生育期有明显的负效应.由此可见,Rht10基因对小麦的生育期、株高、穗长都有明显的不利影响,对各项光合生理参数也有普遍正向或负向的影响,在利用Rht10进行杂交育种时应充分考虑此基因带来的不利效应.