Climate‐driven body‐size trends in the ostracod fauna of the deep Indian Ocean

Abstract: Body size is a common focus of macroevolutionary, macroecological and palaeontological investigations. Here, we document body‐size evolution in 19 species‐level ostracod lineages from the deep Indian Ocean (Deep Sea Drilling Program Site 253) over the past 40 myr. Body‐size trajectories vary across taxa and time intervals, but most lineages (16/19) show net gains in body size. Because many modern ostracod taxa are larger in colder parts of their geographical range, we compared the timing and magnitude of these size changes to established Cenozoic deep‐water cooling patterns confirmed through δ¹⁸O measurements of benthic foraminifera in the samples studied. These data show a significant negative correlation between size changes and temperature changes (ostracods get larger as temperatures get colder), and that systematic size increases only occur during intervals of sustained cooling. In addition, statistical support for an explicit temperature‐tracking model exceeds that of purely directional evolution. We argue that this Cope’s Rule pattern is driven by secular changes in the environment, rather than any universal or intrinsic advantages to larger body sizes, and we note some difficulties in the attempts to link Cope’s Rule to observations made within a single generation.     

Seeing red: the origin of grain pigmentation in US weedy rice

Weedy forms of crop species infest agricultural fields worldwide and are a leading cause of crop losses, yet little is known about how these weeds evolve. Red rice (Oryza sativa), a major weed of cultivated rice fields in the US, is recognized by the dark‐pigmented grain that gives it its common name. Studies using neutral molecular markers have indicated a close relationship between US red rice and domesticated rice, suggesting that the weed may have originated through reversion of domesticated rice to a feral form. We have tested this reversion hypothesis by examining molecular variation at Rc, the regulatory gene responsible for grain pigmentation differences between domesticated and wild rice. Loss‐of‐function mutations at Rc account for the absence of proanthocyanidin pigments in cultivated rice grains, and the major rc domestication allele has been shown to be capable of spontaneous reversion to a functional form through additional mutations at the Rc locus. Using a diverse sample of 156 weedy, domesticated and wild Oryzas, we analysed DNA sequence variation at Rc and its surrounding 4 Mb genomic region. We find that reversion of domestication alleles does not account for the pigmented grains of weed accessions; moreover, we find that haplotypes characterizing the weed are either absent or very rare in cultivated rice. Sequences from genomic regions flanking Rc are consistent with a genomic footprint of the rc selective sweep in cultivated rice, and they are compatible with a close relationship of red rice to Asian Oryzas that have never been cultivated in the US.     

Separating Components of the Detection Process With Combined Methods: An Example With Northern Bobwhite

Abstract: There are various methods of estimating detection probabilities for avian point counts. Distance and multiple-observer methods require the sometimes unlikely assumption that all birds in the population are available (i.e., sing or are visible) during a count, but the time-of-detection method allows for the possibility that some birds are unavailable during the count. We combined the dependent double-observer method with the time-of-detection method and obtained field-based estimates of the components of detection probability for northern bobwhite (Colinus virginianus). Our approach was a special case of Pollock's robust capture-recapture design where the probability that a bird does not sing is analogous to the probability that an animal is a temporary emigrant. Top models indicated that observers' detection probabilities were similar (0.78–0.84) if bobwhite were available, but bobwhite only had an approximately 0.61 probability of being available during a 2.5-minute sampling interval. Additionally, observers' detection probabilities increased substantially after the initial encounter with an individual bobwhite (analogous to a trap-happy response on the part of the observer). A simulated data set revealed that the combined method was precise when availability and detection given availability were substantially lower. Combined methods approaches can provide critical information for researchers and land managers to make decisions regarding survey length and personnel requirements for point-count-based surveys.     

Potential effects of climate change on DOC release from three different soil types on the Northern Pennines UK: examination using field manipulation experiments

Three field manipulation experiments were carried out during 1993–1995 on the Northern Pennines to investigate the influences of temperature, solar radiation and rainfall on the release of dissolved organic carbon (DOC) from vegetated soil cores using zero‐tension lysimeters. The cores were manipulated by being translocated to four sites down a climatic gradient, by artificial soil heating or being exposed to double normal rainfall. In each experiment three soil types, a brown earth, a micropodzol and a peaty gley, with differing organic matter content and distribution within the profile, were studied. DOC data, expressed as mg C m^?2 day^?1, were analysed following log₁₀ transformation, by a repeated measures analysis of variance procedure, using climatic variables measured concurrently with sampling, and 1 and 2 months before sampling. DOC release was dominated by rainfall but was also associated with solar radiation and temperature. With each of the three climatic variables, rainfall, solar radiation and temperature, both positive and negative effects on DOC release have been found significant, indicating that the concurrent and delayed effects of the same variable may be different. DOC release was positively related with all three soils to concurrent rainfall, indicating rainfall's primary leaching action. DOC release was also negatively related to rainfall of the previous month indicating that its action depletes the leachable pool of DOC in the soil. DOC release was positively associated with solar radiation 2 months earlier, indicating that DOC's main source is that of primary production; DOC peaks closely followed peaks of annual primary production. DOC release was linked with temperature, the strongest association being with temperature 2 months earlier, indicating that temperature effects both primary production and DOC regeneration via organic matter decomposition. A conceptual model, relating our findings to those processes known to govern DOC release from soils, has been presented.     

Carbon exchange of a mature,naturally regenerated pine forest in north Florida

We used eddy covariance and biomass measurements to quantify the carbon (C) dynamics of a naturally regenerated longleaf pine/slash pine flatwoods ecosystem in north Florida for 4 years, July 2000 to June 2002 and 2004 to 2005, to quantify how forest type, silvicultural intensity and environment influence stand‐level C balance. Precipitation over the study periods ranged from extreme drought (July 2000–June 2002) to above‐average precipitation (2004 and 2005). After photosynthetic photon flux density (PPFD), vapor pressure deficit (VPD) >1.5 kPa and air temperature <10 °C were important constraints on daytime half‐hourly net CO₂ exchange (NEE_day) and reduced the magnitude of midday CO₂ exchange by >5 μmol CO₂ m^?2 s^?1. Analysis of water use efficiency indicated that stomatal closure at VPD>1.5 kPa moderated transpiration similarly in both drought and wet years. Night‐time exchange (NEE_night) was an exponential function of air temperature, with rates further modulated by soil moisture. Estimated annual net ecosystem production (NEP) was remarkably consistent among the four measurement years (range: 158–192 g C m^?2 yr^?1). In comparison, annual ecosystem C assimilation estimates from biomass measurements between 2000 and 2002 ranged from 77 to 136 g C m^?2 yr^?1. Understory fluxes accounted for approximately 25–35% of above‐canopy NEE over 24‐h periods, and 85% and 27% of whole‐ecosystem fluxes during night and midday (11:00–15:00 hours) periods, respectively. Concurrent measurements of a nearby intensively managed slash pine plantation showed that annual NEP was three to four times greater than that of the Austin Cary Memorial Forest, highlighting the importance of silviculture and management in regulating stand‐level C budgets.     

What It Means to Be 98% Chimpanzee: Apes, People, and Their Genes.

What It Means to Be 98% Chimpanzee: Apes, People, and Their Genes. Jonathan Marks. Berkeley: University of California Press, 2002. 325 pp.     

A multivariate morphometric and meristic description of a population of freshwater-feeding river lampreys, Lampetra fluviatilis (L.), from Loch Lomond, Scotland

Adults of a freshwater-feeding population of Lampetra fluviatilis (L.) in Loch Lomond, Scotland, were trapped on their upstream (spawning) migration in the main inflow to the loch, the Endrick Water. These animals could be distinguished from the more typical anadromous upstream migrant L. fluviatilis , from the Endrick Water and the nearby catchment of the River Forth, principally by their smaller total length, greater disc, snout and eye size and much darker pigmentation. These, and other morphometric and meristic characteristics have been compared for populations of L. fluviatilis and Lampetra planeri (Bloch) from the Lomond and Forth catchments using univariate and multivariate statistics. The Endrick Water 'dwarf' L. fluviatilis was found to differ significantly from the other Lampetra studied, in a number of body proportions in addition to those traits mentioned above, and also in mean numbers of trunk myomeres and teeth. These differences are likely to be due to a combination of the effects of genetic isolation, and the short (freshwater) feeding phase of the 'dwarf' L. fluviatilis , which may, therefore, represent the intermediate stage between parasitic and non-parasitic forms in the L. fluviatilis/L. planeri species pair.     

Food selectivity and diel vertical distribution of Chaoborus edulis (Diptera, Chaoboridae) in Lake Malawi

1. Diel diet and vertical distribution patterns of the larval instars of Chaoborus edulis were studied in deep water near the central part of Lake Malawi, Africa.
2. First instar larvae contained very little food in their crops and probably depended on reserves from the egg. Second, third and fourth instars fed on zooplankton and were size-selective in their feeding. The mean size of prey eaten by the three instars was significantly different from each other, with larger instars feeding on larger prey. Smallest available prey was selected against and the upper size of prey was probably constrained by larval gape. Nauplii were not found in any of several thousand larvae examined. Phytoplankton did not form a significant part of the diet.
3. There was a progressive and related increase in diel periodicity in feeding and vertical migrations of successive instar stages. Fourth instars migrated particularly large distances. Such migrations removed them from their zooplankton food supply but avoided predators. A refuge from predators is probably found in or near the permanent zero oxygen boundary, at depths greater than 200 m.     

The Relationship Between Lipid Peroxidation, Hibernation, and Food Selection in Mammals

SYNOPSIS. A diet that has high levels of polyunsaturated fattyacids enhances mammalian torpor. Polyunsaturated fatty acidsare not synthesized by mammals, but are incorporated into bothmembrane and storage lipids when they occur in the diet. Polyunsaturatedfatty acids also undergo autoxidation more readily than otherfatty acids, thereby producing highly toxic lipid peroxides.Lipid peroxidation increases during torpor. Natural selectionin mammalian hibernators should thus have favored the evolutionof dietary preferences that maximize hibernation ability whilesimultaneously minimizing the degree of lipid peroxidation duringtorpor. This hypothesis was tested in laboratory experimentsand field studies involving golden-mantled ground squirrels(Spermophilus lateralis). We found that the intake of polyunsaturatedfatty acids isrestricted during the fall and autoxidation intissues occurs mostly during the later phases of hibernation.     

Diet and predation by three leaf-associated stoneflies (Plecoptera) in an Arkansas mountain stream

SUMMARY. 1. Life cycles, food habits, mouthpart morphologies, prey preferences, and predator-prey size relationships were investigated for the three most common stoneflies in leaf packs in the Little Missouri River, Arkansas: Clioperla clio (Newman), Isoperla namata Prison, and Perlesta spp. Each species was univoltine and had a fast seasonal cycle, with extended egg or nymphal diapause, rapid nymphal growth and emergence in spring to early summer.
2. Foregut analysis showed predictable dietary shifts by C. clio and Perlesta spp., from detritus and diatoms in early instars to invertebrate prey in later instars. Isoperla namata fed facultatively on insects, detritus and diatoms, with no conspicuous ontogenetic shifts. The mouthparts of all three species strongly reflected their diet.
3. Electivity analysis indicated opportunistic feeding by the three species, with feeding rarely differing significantly from random.
4. Sizes of stonefly predators and their ingested prey were highly correlated ( P <0.01). However, rather than shifting toward larger prey sizes, growing predators expanded their size thresholds and continued to include numerous small prey items in their diet. Prey choice was governed most directly by prey availability, because stoneflies selected the most abundant groups, irrespective of size or taxon.
5. The likelihood of competition among the three stoneflies for prey was minimized by timing of their life cycles, differential food use and probably the temporary nature of leaf pack habitats.