Genome-wide analysis of the diatom cell cycle unveils a novel type of cyclins involved in environmental signaling

Background

Despite the enormous importance of diatoms in aquatic ecosystems and their broad industrial potential, little is known about their life cycle control. Diatoms typically inhabit rapidly changing and unstable environments, suggesting that cell cycle regulation in diatoms must have evolved to adequately integrate various environmental signals. The recent genome sequencing of Thalassiosira pseudonana and Phaeodactylum tricornutum allows us to explore the molecular conservation of cell cycle regulation in diatoms.

Results

By profile-based annotation of cell cycle genes, counterparts of conserved as well as new regulators were identified in T. pseudonana and P. tricornutum. In particular, the cyclin gene family was found to be expanded extensively compared to that of other eukaryotes and a novel type of cyclins was discovered, the diatom-specific cyclins. We established a synchronization method for P. tricornutum that enabled assignment of the different annotated genes to specific cell cycle phase transitions. The diatom-specific cyclins are predominantly expressed at the G1-to-S transition and some respond to phosphate availability, hinting at a role in connecting cell division to environmental stimuli.

Conclusion

The discovery of highly conserved and new cell cycle regulators suggests the evolution of unique control mechanisms for diatom cell division, probably contributing to their ability to adapt and survive under highly fluctuating environmental conditions.     

Novel O-palmitolylated beta-E1 subunit of pyruvate dehydrogenase is phosphorylated during ischemia/reperfusion injury

Background  

During and following myocardial ischemia, glucose oxidation rates are low and fatty acids dominate as a source of oxidative metabolism. This metabolic phenotype is associated with contractile dysfunction during reperfusion. To determine the mechanism of this reliance on fatty acid oxidation as a source of ATP generation, a functional proteomics approach was utilized.     

微藻光合作用制氢——能源危机的最终出路?

微藻光合作用制氢是解决能源短缺问题的有效途径.本文介绍了微藻光合作用制氢的机理,包括蓝藻固氮酶和可逆氢酶产氢以及绿藻可逆氢酶产氢的机理.在分析光合制氢限制因素的基础上,指出筛选和构建高效放氢藻株是制氢的有效途径.然后介绍了“直接生物光解”、固氮酶放氢和“间接生物光解”等制氢方式.利用绿藻“间接生物光解”水制氢是一种最有发展潜力的制氢方式.本文最后展望了微藻光合制氢的前景.     

Alarm cue induces an antipredator morphological defense in juvenile Nicaragua cichlids Hypsophrys nicaraguensis

Olfactory cues that indicate predation risk elicit a number of defensive behaviors in fishes, but whether they are sufficient to also induce morphological defenses has receivedlittle attention. Cichlids are characterized by a high level of morphological plasticity during development, and the few species that have been tested do exhibit defensive behaviors when exposed to alarm cues released from the damaged skin of conspecifics. We utilized young juvenile Nicaragua cichlids Hypsophrys nicaraguensis to test if the perception of predation risk from alarm cue (conspecific skin extract) alone induces an increased relative body depth which is a defense against gape-limited predators. After two weeks of exposure, siblings that were exposed to conspecific alarm cue increased their relative body depth nearly double the amount of those exposed to distilled water (control) and zebrafish Danio rerio alarm cue. We repeated our measurements over the last two weeks (12 and 14) of cue exposure when the fish were late-stage juveniles to test if the rate of increase was sustained; there were no differences in final dimensions between the three treatments. Our results show that 1) the Nicaragua cichlid has an innate response to conspecific alarm cue which is not a generalized response to an injured fish, and 2) this innate recognition ultimately results in developing a deeper body at a stage of the life history where predation risk is high [Current Zoology 56 (1): 36-42, 2010].     

Effects of excluding bottom-disturbing mobile fishing gear on abundance and biomass of groundfishes in the Stellwagen Bank National Marine Sanctuary, USA

The Stellwagen Bank National Marine Sanctuary (southern Gulf of Maine, northwest Atlantic) is partially overlapped by the Western Gulf of Maine Closure Area (WGMCA). This is a region in which mobile, bottom-disturbing fishing gear has been banned by the New England Fishery Management Council to facilitate the rebuilding of depleted groundfish populations. We assessed the effects and effectiveness of the WGMCA on groundfish assemblages using habitat-stratified (gravel, sand, mixed benthic habitats) sampling by means of a commercial trawler, inside and outside of the WGMCA. Sampling occurred over three month-long sampling periods in 2004-2005, two during the spring seasons and one during the fall season. A total of 18 species were analyzed for protection effects. After controlling for substratum, location and sampling season, eight groundfish species exhibited higher mean proportional abundance inside than outside the WGMCA while two were proportionally more abundant on average outside of the closure. Four species had higher mean proportional biomasses on average inside the closure and three outside. We conclude that the WGMCA may be achieving its goal of rebuilding abundance and biomass for some commercially targeted groundfishes but not all. This study, six to seven years post-closure establishment, reveals fine-scale spatial and taxonomic complexity which will require a very different monitoring protocol than the one currently in place if adaptive management is to be successful in the region [Current Zoology 56 (1): 134-143, 2010].