Cuttlefish use visual cues to control three-dimensional skin papillae for camouflage

Cephalopods (octopus, squid and cuttlefish) are known for their camouflage. Cuttlefish Sepia officinalis use chromatophores and light reflectors for color change, and papillae to change three-dimensional physical skin texture. Papillae vary in size, shape and coloration; nine distinct sets of papillae are described here. The objective was to determine whether cuttlefish use visual or tactile cues to control papillae expression. Cuttlefish were placed on natural substrates to evoke the three major camouflage body patterns: Uniform/Stipple, Mottle and Disruptive. Three versions of each substrate were presented: the actual substrate, the actual substrate covered with glass (removes tactile information) and a laminated photograph of the substrate (removes tactile and three-dimensional information because depth-of-field information is unavailable). No differences in Small dorsal papillae or Major lateral mantle papillae expression were observed among the three versions of each substrate. Thus, visual (not tactile) cues drive the expression of papillae in S. officinalis. Two sets of papillae (Major lateral mantle papillae and Major lateral eye papillae) showed irregular responses; their control requires future investigation. Finally, more Small dorsal papillae were shown in Uniform/Stipple and Mottle patterns than in Disruptive patterns, which may provide clues regarding the visual mechanisms of background matching versus disruptive coloration.     

SeedQuant: a deep learning-based tool for assessing stimulant and inhibitor activity on root parasitic seeds

Witchweeds (Striga spp.) and broomrapes (Orobanchaceae and Phelipanche spp.) are root parasitic plants that infest many crops in warm and temperate zones, causing enormous yield losses and endangering global food security. Seeds of these obligate parasites require rhizospheric, host-released stimulants to germinate, which opens up possibilities for controlling them by applying specific germination inhibitors or synthetic stimulants that induce lethal germination in the host’s absence. To determine their effect on germination, root exudates or synthetic stimulants/inhibitors are usually applied to parasitic seeds in in vitro bioassays, followed by assessment of germination ratios. Although these protocols are very sensitive, the germination recording process is laborious, representing a challenge for researchers and impeding high-throughput screens. Here, we developed an automatic seed census tool to count and discriminate germinated seeds (GS) from non-GS. We combined deep learning, a powerful data-driven framework that can accelerate the procedure and increase its accuracy, for object detection with computer vision latest development based on the Faster Region-based Convolutional Neural Network algorithm. Our method showed an accuracy of 94% in counting seeds of Striga hermonthica and reduced the required time from approximately 5 min to 5 s per image. Our proposed software, SeedQuant, will be of great help for seed germination bioassays and enable high-throughput screening for germination stimulants/inhibitors. SeedQuant is an open-source software that can be further trained to count different types of seeds for research purposes.     

Viral interference with B7-1 costimulation: a new role for murine cytomegalovirus fc receptor-1

Murine CMV (MCMV), a beta-herpesvirus, infects dendritic cells (DC) and impairs their function. The underlying events are poorly described. In this study, we identify MCMV m138 as the viral gene responsible for promoting the rapid disappearance of the costimulatory molecule B7-1 (CD80) from the cell surface of DC. This was unexpected, as m138 was previously identified as fcr-1, a putative virus-encoded FcR. m138 impaired the ability of DC to activate CD8+ T cells. Biochemical analysis and immunocytochemistry showed that m138 targets B7-1 in the secretory pathway and reroutes it to lysosomal associated membrane glycoprotein-1+ compartments. These results show a novel function for m138 in MCMV infection and identify the first viral protein to target B7-1.     

Feeding Consequences of Hand and Foot Disability in Wild Adult Chimpanzees (<Emphasis Type=Italic>Pan troglodytes schweinfurthii</Emphasis>)

Many wild primates experience long-term limb disability, and their ability to cope with disability has implications for survival and fitness. We quantified the arboreal feeding and postural behaviors of adult chimpanzees to study the consequences of physical limb disabilities. We collected behavioral data for a total of 8 mo on chimpanzees at Sebitoli, Kibale National Park, Uganda, focusing on the time spent feeding, common feeding tree species, body postures, and substrate use. Of the 51 chimpanzees we observed, 16 (31%) exhibited limb anomalies, which varied in form and severity. Disabled chimpanzees climbed as high as chimpanzees without disabilities and did not differ from nondisabled chimpanzees in the amount they used feeding tree species. Adult chimpanzees with severe hand disability spent significantly more time feeding than nondisabled individuals. In addition, manually disabled adults did not suspend themselves from branches during feeding as frequently as nondisabled adults and used larger substrates for gripping and sitting than nondisabled adults. These results indicate that disabled individuals compensate to carry out feeding activities in trees.     

Coral Mucus Is a Hot Spot for Viral Infections

There is increasing suspicion that viral communities play a pivotal role in maintaining coral health, yet their main ecological traits still remain poorly characterized. In this study, we examined the seasonal distribution and reproduction pathways of viruses inhabiting the mucus of the scleractinians Fungia repanda and Acropora formosa collected in Nha Trang Bay (Vietnam) during an 11-month survey. The strong coupling between epibiotic viral and bacterial abundance suggested that phages are dominant among coral-associated viral communities. Mucosal viruses also exhibited significant differences in their main features between the two coral species and were also remarkably contrasted with their planktonic counterparts. For example, their abundance (inferred from epifluorescence counts), lytic production rates (KCN incubations), and the proportion of lysogenic cells (mitomycin C inductions) were, respectively, 2.6-, 9.5-, and 2.2-fold higher in mucus than in the surrounding water. Both lytic and lysogenic indicators were tightly coupled with temperature and salinity, suggesting that the life strategy of viral epibionts is strongly dependent upon environmental circumstances. Finally, our results suggest that coral mucus may represent a highly favorable habitat for viral proliferation, promoting the development of both temperate and virulent phages. Here, we discuss how such an optimized viral arsenal could be crucial for coral viability by presumably forging complex links with both symbiotic and adjacent nonsymbiotic microorganisms.     

Differential Activation of Cultured Neonatal Cardiomyocytes by Plasmalemmal Versus Intracellular G Protein-coupled Receptor 55

The L-α-lysophosphatidylinositol (LPI)-sensitive receptor GPR55 is coupled toCa²⁺ signaling. Low levels of GPR55 expression in the heart have been reported.Similar to other G protein-coupled receptors involved in cardiac function, GPR55 may be expressedboth at the sarcolemma and intracellularly. Thus, to explore the role of GPR55 in cardiomyocytes, weused calcium and voltage imaging and extracellular administration or intracellular microinjection ofGPR55 ligands. We provide the first evidence that, in cultured neonatal ventricular myocytes, LPItriggers distinct signaling pathways via GPR55, depending on receptor localization. GPR55 activationat the sarcolemma elicits, on one hand, Ca²⁺ entry via L-typeCa²⁺ channels and, on the other, inositol 1,4,5-trisphosphate-dependentCa²⁺ release. The latter signal is further amplified byCa²⁺-induced Ca²⁺ release via ryanodine receptors. Conversely,activation of GPR55 at the membrane of intracellular organelles promotes Ca²⁺release from acidic-like Ca²⁺ stores via the endolysosomal NAADP-sensitivetwo-pore channels. This response is similarly enhanced by Ca²⁺-inducedCa²⁺ release via ryanodine receptors. Extracellularly applied LPI producesCa²⁺-independent membrane depolarization, whereas the Ca²⁺signal induced by intracellular microinjection of LPI converges to hyperpolarization of thesarcolemma. Collectively, our findings point to GPR55 as a novel G protein-coupled receptorregulating cardiac function at two cellular sites. This work may serve as a platform for futurestudies exploring the potential of GPR55 as a therapeutic target in cardiac disorders.     

The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2

Presented here is the complete genome sequence of Thiomicrospira crunogena XCL-2, representative of ubiquitous chemolithoautotrophic sulfur-oxidizing bacteria isolated from deep-sea hydrothermal vents. This gammaproteobacterium has a single chromosome (2,427,734 base pairs), and its genome illustrates many of the adaptations that have enabled it to thrive at vents globally. It has 14 methyl-accepting chemotaxis protein genes, including four that may assist in positioning it in the redoxcline. A relative abundance of coding sequences (CDSs) encoding regulatory proteins likely control the expression of genes encoding carboxysomes, multiple dissolved inorganic nitrogen and phosphate transporters, as well as a phosphonate operon, which provide this species with a variety of options for acquiring these substrates from the environment. Thiom. crunogena XCL-2 is unusual among obligate sulfur-oxidizing bacteria in relying on the Sox system for the oxidation of reduced sulfur compounds. The genome has characteristics consistent with an obligately chemolithoautotrophic lifestyle, including few transporters predicted to have organic allocrits, and Calvin-Benson-Bassham cycle CDSs scattered throughout the genome.