Identification of the PcrA DNA helicase reaction pathway by applying advanced targeted molecular dynamic simulations

PcrA DNA helicase uses the free energy of hydrolysis and binding of ATP to unwind double-stranded DNA (ds-DNA). There are two states of PcrA, termed the substrate and product complexes and, through the conformational changes between these two states, PcrA moves along ds-DNA and separates the two strands. In this study, two different methods, namely chain minimisation (CM, less reliable method) and auto targeted molecular dynamic (TMD) simulation (more reliable), were performed to generate two different initial reaction pathways between these two states, and then fixed root mean square distance (RMSD) TMD simulation was performed to optimise these two initial pathways. In general, the two optimised pathways share very similar major conformational changes, but are different in the minor motions. The potential energy profiles of the two improved pathways are generally similar, but the one generated by the improved TMD path is slightly lower. Considering the poor reliability of the initial path generated by CM and insignificant improvements of the auto-TMD path, our study suggests that fixed RMSD TMD simulation can generate reliable reaction pathways, but the different initial paths still have some influence on the detailed conformational analysis.     

A re-evaluation of aff. Megaloolithidae eggshell fragments from the uppermost Cretaceous of the Pyrenees and implications for crocodylomorph eggshell structure

The Upper Cretaceous outcrops of the Pyrenees yield one of the most extensive and continuous records of paleoological remains anywhere in the world. Most of eggs and eggshells have been referred to the oofamily Megaloolithidae. In this study, we present a revision of eggshell fragments from the Blasi 2 locality, lattermost Maastrichtian in age, previously assigned to aff. Megaloolithidae. The presence of a blocky extinction pattern and basal knobs supports a crocodilian affinity of these materials. We classify them as Krokolithidae indet. Three structural layers can be recognised in the Blasi 2 eggshells, a feature that is shared with other recent eggshells (e.g. Crocodylus porosus and Crocodylus niloticus) and fossil crocodylomorph eggshells (Krokolitheswilsoni), which were previously described as single layered. The new proposed affinity of the Blasi 2 eggshells reduces the Megaloolithidae oodiversity of the last few million years of the Cretaceous in the Pyrenees to only two valid ootaxa, Megaloolithusmamillare and Megaloolithusbaghensis. The lack of more complete material precludes the erection of new ootaxa based on the Blasi 2 material.     

Elsholtzia litangensis sp. nov. (Lamiaceae) endemic to China

A new species of Elsholtzia, E. litangensis C. X. Pu & W. Y. Chen, is described and illustrated from Sichuan, Tibet and Qinghai. The diagnostic features of the new species are compared with E. fruticosa (D. Don) Rehd. Elsholtzia litangensis is characterized by a secund spike and a scaly buds in the leaf axils.     

Intragastric Administration of Casein Leads to Nigrostriatal Disease Progressed Accompanied with Persistent Nigrostriatal—Intestinal Inflammation Activited and Intestinal Microbiota—Metabolic Disorders Induced in MPTP Mouse Model of Parkinson’s Disease

Neurochemical Research - Gut microbial dysbiosis and alteration of gut microbiota composition in Parkinson's disease (PD) have been increasingly reported, no recognized therapies are available...     

基于Petri网T不变量的PHB新陈代谢建模分析(英文)

从拓扑结构的角度分析生化反应网络是生物信息学研究中的一个热点问题。通过将两种传统的途径分析方法(基元模式和极端途径)与Petri网的T不变量分析进行了比较,结果表明:它们本质上是一致的,但是采用Petri网的T不变量分析更便捷。然后,利用Petri网技术构建了PHB代谢模型。对该模型作了结构分析,将计算得到的23个T不变量进行了分组:I组表示简单的可逆反应,II组表示循环的反应,III组可用于调控ATP/ADP比率,IV组是与PHB生产直接相关的反应,可用于代谢工程以提高PHB的产率。最后讨论了Petri网的T不变量分析在这个领域中的应用。     

与TaFRA蛋白相互作用候选蛋白的筛选

F-box蛋白是E3泛素连接酶SCF复合体的重要亚基, 通过底物蛋白的特异识别发挥功能。TaFRA是在盐胁迫差异表达片段基础上通过RACE方法获得的一个基因, 编码F-box蛋白。文章利用TaFRA基因构建诱饵表达载体, 直接用cDNA+pGAD+pBD共转化酵母双杂交的方法筛选相互作用的候选蛋白。通过对阳性克隆的鉴定和测序分析, 共获得44个与TaFRA相互作用的候选蛋白, 其中32个为已知蛋白, 包括硫氧还蛋白、金属硫蛋白、ATP合成酶及丝氨酸/苏氨酸蛋白激酶等多种逆境胁迫反应蛋白及转录因子蛋白, 说明TaFRA与胁迫反应相关, 可能通过对上述蛋白编码基因的调控参与了植物的胁迫反应过程, 为进一步阐明TaFRA的功能及作用机制奠定了理论基础。     

2-Methoxyestradiol Induces Mitotic Arrest,Apoptosis, and Synergistic Cytotoxicity with Arsenic Trioxide in Human Urothelial Carcinoma Cells

2-Methoxyestradiol (2-ME), an endogenous derivative of 17β-estradiol, has been reported to elicit antiproliferative responses in various tumors. In this study, we investigated the effects of 2-ME on cell viability, proliferation, cell cycle, and apoptosis in human urothelial carcinoma (UC) cell lines. We used two high-grade human bladder UC cell lines (NTUB1 and T24). After treatment with 2-ME, the cell viability and apoptosis were measured by MTT assay and flow cytometry (fluorescence-activated cell sorting), with annexin V-FITC staining and propidium iodide (PI) labeling. DNA fragmentation was analyzed by agarose gel electrophoresis. Flow cytometry with PI labeling was used for the cell cycle analyses. The protein levels of caspase activations, poly (ADP-ribose) polymerase (PARP) cleavage, phospho-histone H2A.X, phospho-Bad, and cell cycle regulatory molecules were measured by Western blot. The effects of the drug combinations were analyzed using the computer software, CalcuSyn. We demonstrated that 2-ME effectively induces dose-dependent cytotoxicity and apoptosis in human UC cells after 24 h exposure. DNA fragmentation, PARP cleavage, and caspase-3, 7, 8, 9 activations can be observed with 2-ME-induced apoptosis. The decreased phospho-Bad (Ser136 and Ser155) and mitotic arrest of the cell cycle in the process of apoptosis after 2-ME treatment was remarkable. In response to mitotic arrest, the mitotic forms of cdc25C, phospho-cdc2, cyclin B1, and phospho-histone H3 (Ser10) were activated. In combination with arsenic trioxide (As₂O₃), 2-ME elicited synergistic cytotoxicity (combination index <1) in UC cells. We concluded that 2-ME significantly induces apoptosis through decreased phospho-Bad and arrests bladder UC cells at the mitotic phase. The synergistic antitumor effect with As₂O₃ provides a novel implication in clinical treatment of UC.     

A study on the localization and distribution of GnRH and its receptor in rat submaxillary glands by immunohistochemical,in situ hybridization and RT-PCR

We investigated the rat submaxillary gland for the presence of GnRH and GnRH receptors, the localization and colocalization of GnRH, GnRH receptor and their mRNA, and studied the sequence of GnRH receptor complementary DNA (cDNA) by immunohistochemistry, in situ hybridization and RT-PCR. The results showed that GnRH and GnRH receptor immunoreactive materials were colocalized in the epithelial cells of the serous acinus and glandular duct. The GnRH and GnRH receptor mRNA hybridization signals were detected in the above cells. The sequence obtained from the RT-PCR product was identical to the published cDNA sequence of GnRH receptor in the rat pituitary. The results suggested that the rat submaxillary gland was capable of synthesizing GnRH and GnRH receptors. GnRH may be involved in the functional regulation of the submaxillary gland through autocrine or paracrine activity.     

A single point mutation resulting in an adversely reduced expression of DPM2 in the Lec15.1 cells

Mammalian dolichol-phosphate-mannose (DPM) synthase consists of three subunits, DPM1, DPM2, and DPM3. Lec15.1 Chinese hamster ovary cells are deficient in DPM synthase activity. The present paper reports that DPM1 cDNA from wild type and Lec15.1 CHO cells were found to be identical, and transfection with CHO DPM1 cDNA did not reverse the Lec15.1 phenotype. Neither did a chimeric cDNA containing the complete hamster DPM1 open reading frame fused to the Saccharomyces cerevisiae DPM1 C-terminal transmembrane domain. In contrast, Lec15.1 cells were found to have a single point mutation G29A within the coding region of the DPM2 gene, resulting in a glycine to glutamic acid change in amino acid residue 10 of the peptide. Moreover, mutant DPM2 cDNA expressed a drastically reduced amount of DPM2 protein and poorly corrects the Lec15.1 cell phenotype when compared with wild type CHO DPM2 cDNA (G(29) form).     

基于红外相机技术对亚洲象个体识别和种群数量的评估

以云南西双版纳国家级自然保护区尚勇子保护区内亚洲象种群为研究对象,通过自动红外照相技术,估算了该地区亚洲象的最小种群数量。本研究于2016年1月,在研究区域内共布设了27个相机位点,野外安放时间为4个月。调查期间,每台相机的有效捕获日为9-52d不等（均值为24d）,红外相机有效捕获日621d,拍摄到亚洲象照片共1944张。通过红外相机照片开展个体识别,最终估算出尚勇保护区内亚洲象的最小种群数量为69头（其中成年象38头,亚成象15头,幼象16头）。拍到7头活动于中国-老挝边境区域的跨境象群。本文探讨利用红外相机拍摄的亚洲象照片进行个体识别的方法,指出与常规调查方法相比较的优势和不足,作为快速、实时有效的种群评估方法的价值。研究结果丰富了保护区内亚洲象种群数据库,为研究、制定和开展亚洲象保护行动提供重要支撑。