Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis

Small RNAs of 21-25 nucleotides (nt), including small interfering RNAs (siRNAs) and microRNAs (miRNAs), act as guide RNAs to silence target-gene expression in a sequence-specific manner. In addition to a Dicer homolog, DCL1, the biogenesis of miRNAs in Arabidopsis requires another protein, HEN1. miRNAs are reduced in abundance and increased in size in hen1 mutants. We found that HEN1 is a miRNA methyltransferase that adds a methyl group to the 3'-most nucleotide of miRNAs, but the role of miRNA methylation was unknown. Here, we show that siRNAs from sense transgenes, hairpin transgenes, and transposons or repeat sequences, as well as a new class of siRNAs known as trans-acting siRNAs, are also methylated in vivo by HEN1. In addition, we show that the size increase of small RNAs in the hen1-1 mutant is due to the addition of one to five U residues to the 3' ends of the small RNAs. Therefore, a novel uridylation activity targets the 3' ends of unmethylated miRNAs and siRNAs in hen1 mutants. We conclude that 3'-end methylation is a common step in miRNA and siRNA metabolism and likely protects the 3' ends of the small RNAs from the uridylation activity.     

华根霉固态与液态培养产胞外蛋白的比较蛋白质组学分析

【目的】考察固态和液态两种培养方式对丝状真菌华根霉(Rhizopus chinensis)CCTCC M201021产胞外蛋白的影响,以加深对微生物固、液态培养特异性产酶的认识。【方法】利用成分相同的培养基对华根霉分别进行平板固态培养和液态培养,提取华根霉所产胞外蛋白,采用二维凝胶电泳(2-DE)结合质谱分析,分离鉴定差异蛋白。【结果】固态培养下华根霉所产胞外蛋白的蛋白酶活性是液态培养的9.2倍。胞外蛋白质组数据分析表明,华根霉固态和液态培养所产胞外蛋白存在显著差异,其中约70%是固态和液态培养下各自产生的特有蛋白。质谱鉴定进一步表明,固、液态培养对华根霉产胞外蛋白的种类和表达量都有显著影响,其中水解酶类所占比例较大,主要是与蛋白质降解相关的蛋白。【结论】固态和液态不同培养方式影响了华根霉产胞外蛋白的组成,有些基因只在特定培养方式下表达。固态培养下华根霉产胞外蛋白酶种类相对更多以及大部分蛋白酶的上调表达,可能是固态培养下胞外蛋白酶活性很高的原因。研究结果提示需要注意固液态不同培养方式下丝状真菌胞外酶的筛选和生产可能存在的不一致性。     

微波辅助提取荷叶生物碱条件的优化

对荷叶中主要生理活性物质生物碱的提取条件进行了初步研究,以稀盐酸水为溶剂结合微波照射浸渍提取,获得了较优化的提取工艺,即用pH2.5 HCl、微波辅助处理2.5 min、固液比1:40、提取温度90℃、提取时间3 h,可得荷叶生物碱量172.63μg.g-1。     

Pyrosequencing Reveals Contrasting Soil Bacterial Diversity and Community Structure of Two Main Winter Wheat Cropping Systems in China

Microbes are key components of the soil environment, playing an important role in maintaining soil health, sustainability, and productivity. The composition and structure of soil bacterial communities were examined in winter wheat–rice (WR) and winter wheat–maize (WM) cropping systems derived from five locations in the Low-Middle Yangtze River plain and the Huang-Huai-Hai plain by pyrosequencing of the 16S ribosomal RNA gene amplicons. A total of 102,367 high quality sequences were used for multivariate statistical analysis and to test for correlation between community structure and environmental variables such as crop rotations, soil properties, and locations. The most abundant phyla across all soil samples were Proteobacteria, Acidobacteria, and Bacteroidetes. Similar patterns of bacterial diversity and community structure were observed within the same cropping systems, and a higher relative abundance of anaerobic bacteria was found in WR compared to WM cropping systems. Variance partitioning analysis revealed complex relationships between bacterial community and environmental variables. The effect of crop rotations was low but significant, and interactions among soil properties, locations, and crop rotations accounted for most of the explained variation in the structure of bacterial communities. Soil properties such as pH, available P, and available K showed higher correlations (positive or negative) with the majority of the abundant taxa. Bacterial diversity (the Shannon index) and richness (Chao1 and ACE) were higher under WR than WM cropping systems.     

荒漠植物白刺属4个物种的生殖分配比较

选定乌兰布和沙漠地区白刺属4种植物为研究对象,通过对其样株在花期的各生殖构件的数量特征及生物量调查,系统研究了唐古特白刺(Nitraria tangutorum Bobr.)、西伯利亚白刺(Nitraria sibirica Pall.)、大白刺(Nitraria roborowskii Kom.)和泡泡刺(Nitraria sphaerocarpa Maxim.)4种白刺属植物在生殖枝水平上的生殖分配。结果表明:不同白刺属植物在分株高度、生殖枝长、生殖枝基径、单枝花数、花序干重、枝叶干重等生殖构件的数量性状方面均有显著差异,其中泡泡刺的各生殖构件的数量均最小;除了西伯利亚白刺的生殖分配值达到44.51%外,其余3种白刺的生殖分配值均没有超过20%。经统计分析,4种白刺种群的生殖枝长分别与分株高度呈显著(P<0.05)的直线性正相关关系;生殖枝花序干重与分株高显著正相关;4种白刺的生殖分配随着分株生殖枝生物量的增加而减少,即白刺的个体大小与生殖分配之间呈现负相关关系。这种生殖分配特点反映了不同白刺植物对生长环境的资源利用、与克隆繁殖的权衡及对生态适应的策略。     

Viral metagenomics analysis of planktonic viruses in East Lake, Wuhan, China

East Lake (Lake Donghu), located in Wuhan, China, is a typical city freshwater lake that has been experiencing eutrophic conditions and algal blooming during recent years. Marine and fresh water are considered to contain a large number of viruses. However, little is known about their genetic diversity because of the limited techniques for culturing viruses. In this study, we conducted a viral metagenomic analysis using a high-throughput sequencing technique with samples collected from East Lake in Spring, Summer, Autumn, and Winter. The libraries from four samples each generated 234,669, 71,837, 12,820, and 34,236 contigs (> 90 bp each), respectively. The genetic structure of the viral community revealed a high genetic diversity covering 23 viral families, with the majority of contigs homologous to DNA viruses, including members of Myoviridae, Podoviridae, Siphoviridae, Phycodnaviridae, and Microviridae, which infect bacteria or algae, and members of Circoviridae, which infect invertebrates and vertebrates. The highest viral genetic diversity occurred in samples collected in August, then December and June, and the least diversity in March. Most contigs have low-sequence identities with known viruses. PCR detection targeting the conserved sequences of genes (g20, psbA, psbD, and DNApol) of cyanophages further confirmed that there are novel cyanophages in the East Lake. Our viral metagenomic data provide the first preliminary understanding of the virome in one freshwater lake in China and would be helpful for novel virus discovery and the control of algal blooming in the future.     

半干旱黄土高原地区春小麦地膜覆盖研究概述

在黄土高原半干旱地区春小麦上进行的地膜覆盖试验表明,地膜覆盖通过改善耕层土壤生态环境条件,即通过改善水,热状况,活化土壤养分,对提高水分和养分利用效率,实现粮食增产具有重要作用,但近年来在生产实践和科学实验中发现,不合理的长期全生育期地膜覆盖,因在作物生长前期和中期覆膜作物较不覆膜作物生长好,覆膜作物在生长期水分蒸腾损失严重,土壤水分的蒸散（蒸发＋蒸腾）损失远比不覆膜土壤严重,在作物生长后期降水少或没有补充灌溉时,会产生严重的水分肋迫现象,显著抑制小穗分化和灌浆,最终导致收获得指数和产量下降,同时,地膜覆盖的增产作用在一定程度上是以耗竭土壤肥力,特别是在有机物质为代 的,因此,不正确的地膜覆盖（如全生育期的地膜覆盖）,不仅有时起不到显著的增产作用,而且易造成土壤养分,特别是土壤中硝态氮的累积和损失,肥料利用效率降低,土壤生态条件恶化,下降,难以持续高产,因此在确定地膜覆盖范式时,必须要考虑底墒,作物生育期降水,地膜覆盖的阶段性和氮肥的施用等。     

胆红素氧化反应的激光表面增强拉曼光谱研究

本文报道了胆红素和胆绿素,以及氧化胆红素的ＳＥＲＳ谱图。通过对其谱图的分析发现,氧化胆红素ＳＥＲＳ谱与胆绿素ＳＥＥＳ谱极其相近。表明胆红素在碱性环境中可被氧化成胆绿素。另外,通过对比胆红素和胆绿素的ＳＥＲＳＳ谱,发现在银胶界面它们的吸附构象不同。     

吸附剂及培养基组成对香荚兰细胞悬浮培养产生香兰素的影响

本文报道了培养基的组成及添加吸附剂对香荚兰细胞悬浮培养产生香兰素的影响。结果表明,添加吸附剂活性炭及XAD-2后,香荚兰细胞产生的香兰素含量明显增加,而且活性炭的效果优于XAD-2;香荚兰细胞在全组成的MS培养基中香兰素含量均低于由矿物质盐组成培养基中的含量。可以考虑采用二步培养法来培养香荚兰细胞及产生香兰素。