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The site of substitution of the peripheral branches on the core mannose-residues in the complex-type carbohydrate units of glycoproteins has been studied by Smith degradation. By using glycopeptides of known structure, it is shown that the site of attachment of the (1→4)-linked, third branch to the mannose core in tri- and tetra-antennary structures may be conveniently demonstrated by this technique. A critical factor was found to be the concentration of acid used for cleavage of the periodate-oxidized product. This finding could explain discrepancies concerning the previously published structures of fetuin glycopeptides. The technique was applied for study of the branching pattern in human transferrin, porcine thyroglobulin, and rat plasma and brain glycoproteins. The results support the concept that, in glycoproteins from most sources, the third (1→4)-linked branch is attached to the (1→3)-linked mannose residue of the core portion in the complex-type structures. An indication for a novel type of branching pattern in human transferrin was, however, also obtained. 相似文献
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Erna Suutari Jukka Salmela Lauri Paasivirta Markus J. Rantala Katja Tynkkynen Mari Luojumäki Jukka Suhonen 《Journal of Insect Conservation》2009,13(4):413-419
Species with narrow ranges and specialised traits are most at risk, and the extinction wave is further enhanced by coextinctions.
We studied the conservation value and indicator potential of Stratiotes aloides, an aquatic macrophyte that has declined considerably in Europe. Our purpose was to determine whether S. aloides could be used as an indicator of a valuable habitat in terms of macroarthropod diversity and species richness. The potential
occurrence of an internationally endangered Stratiotes-habitat specialist, the dragonfly Aeshna viridis, can increase the conservation value of plant colonies. S. aloides beds harboured diverse macroarthropod fauna often containing species of conservation concern, including A. viridis. Stratiotes is a potential indicator of a valuable habitat, and its indicator value is enhanced by the easy identification of the species.
However, its use as an indicator of a defined macroarthropod community is limited because no particular community type is
connected to it. We suggest that protecting Stratiotes simultaneously conserves valuable arthropod fauna, including A. viridis. 相似文献
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Ziegler T Matikainen S Rönkkö E Osterlund P Sillanpää M Sirén J Fagerlund R Immonen M Melén K Julkunen I 《Journal of virology》2005,79(21):13800-13805
Activation of host innate immune responses was studied in severe acute respiratory syndrome coronavirus (SCV)-infected human A549 lung epithelial cells, macrophages, and dendritic cells (DCs). In all cell types, SCV-specific subgenomic mRNAs were seen, whereas no expression of SCV proteins was found. No induction of cytokine genes (alpha interferon [IFN-alpha], IFN-beta, interleukin-28A/B [IL-28A/B], IL-29, tumor necrosis factor alpha, CCL5, or CXCL10) or IFN-alpha/beta-induced MxA gene was seen in SCV-infected A549 cells, macrophages, or DCs. SCV also failed to induce DC maturation (CD86 expression) or enhance major histocompatibility complex class II expression. Our data strongly suggest that SCV fails to activate host cell cytokine gene expression in human macrophages and DCs. 相似文献
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Jessica K. Calland Ben Pascoe Sion C. Bayliss Evangelos Mourkas Elvire Berthenet Harry A. Thorpe Matthew D. Hitchings Edward J. Feil Jukka Corander Martin J. Blaser Daniel Falush Samuel K. Sheppard 《PLoS genetics》2021,17(9)
Measuring molecular evolution in bacteria typically requires estimation of the rate at which nucleotide changes accumulate in strains sampled at different times that share a common ancestor. This approach has been useful for dating ecological and evolutionary events that coincide with the emergence of important lineages, such as outbreak strains and obligate human pathogens. However, in multi-host (niche) transmission scenarios, where the pathogen is essentially an opportunistic environmental organism, sampling is often sporadic and rarely reflects the overall population, particularly when concentrated on clinical isolates. This means that approaches that assume recent common ancestry are not applicable. Here we present a new approach to estimate the molecular clock rate in Campylobacter that draws on the popular probability conundrum known as the ‘birthday problem’. Using large genomic datasets and comparative genomic approaches, we use isolate pairs that share recent common ancestry to estimate the rate of nucleotide change for the population. Identifying synonymous and non-synonymous nucleotide changes, both within and outside of recombined regions of the genome, we quantify clock-like diversification to estimate synonymous rates of nucleotide change for the common pathogenic bacteria Campylobacter coli (2.4 x 10−6 s/s/y) and Campylobacter jejuni (3.4 x 10−6 s/s/y). Finally, using estimated total rates of nucleotide change, we infer the number of effective lineages within the sample time frame–analogous to a shared birthday–and assess the rate of turnover of lineages in our sample set over short evolutionary timescales. This provides a generalizable approach to calibrating rates in populations of environmental bacteria and shows that multiple lineages are maintained, implying that large-scale clonal sweeps may take hundreds of years or more in these species. 相似文献
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Sheikh M. Talha Jukka Hyt?nen Adam Westhorpe Sushil Kumar Navin Khanna Kim Pettersson 《PloS one》2013,8(12)
Treponema pallidum subspecies pallidum (Tp) is the causative agent of syphilis which mainly spreads through sexual contact, blood transfusion and perinatal route. In order to curtail the spread of the infection and to clinically manage the disease, timely, accurate and reliable diagnosis is very important. We have developed an immunoassay for the detection of treponemal antibodies in human serum or plasma samples. In vivo biotinylated and non-biotinylated versions of the recombinant antigen were designed by the fusion of three Tp-specific antigens namely Tp15, Tp17 and Tp47. These fusion antigens were expressed in E. coli and purified using single-step metal affinity chromatography. Biotinylated fusion antigen immobilized on streptavidin coated plate was used to capture the treponemal antibodies and the non-biotinylated antigen coated on europium nanoparticles was used as tracer. Assays with two different incubation times of 10 min and 1 h were developed, and following the incubation the europium fluorescence was measured using time-resolved fluorometry. The developed time-resolved fluorometric (TRF) immunoassays were evaluated with in-house and commercial serum/plasma sample panels. For well-established treponemal antibodies positive or negative samples, the sensitivity of TRF immunoassay with 10 min incubation time was 97.4%, and of TRF immunoassay with 1 h incubation time was 98.7%, and the specificities of both the TRF immunoassays were 99.2%. For the samples with discordant results with the reference assays, both the TRF immunoassays showed better specificity than the Enzygnost syphilis enzyme immunoassay as a screening test. The two different incubation times did not have any significant effect on the signal to cutoff (S/Co) ratios obtained with the two immunoassays (p = 0.06). Our results indicate that the developed immunoassay with a short incubation time of 10 min has the potential to be used in clinical laboratories and in blood-bank settings as a screening test for treponemal antibodies. 相似文献
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Hydrobiologia - Forestry-related land use can cause increasing instream sedimentation, burying and eradicating stream bryophytes, with severe ecological consequences. However, there is limited... 相似文献
10.
Marja Maljanen Narasinha Shurpali Jyrki Hyt?nen P?ivi M?kiranta Lasse Aro Hannamaria Potila Jukka Laine Changsheng Li Pertti J. Martikainen 《Biogeochemistry》2012,108(1-3):199-218
Pristine peatlands have generally low nitrous oxide (N2O) emissions but drainage and management practices enhance the microbial processes and associated N2O emissions. It is assumed that leaving peat soils from intensive management, such as agriculture, will decrease their N2O emissions. In this paper we report how the annual N2O emission rates will change when agricultural peat soil is either left abandoned or afforested and also N2O emissions from afforested peat extraction sites. In addition, we evaluated a biogeochemical model (DNDC) with a view to explaining GHG emissions from peat soils under different land uses. The abandoned agricultural peat soils had lower mean annual N2O emissions (5.5?±?5.4?kg?N?ha?1) than the peat soils in active agricultural use in Finland. Surprisingly, N2O emissions from afforested organic agricultural soils (12.8?±?9.4?kg?N?ha?1) were similar to those from organic agricultural soils in active use. These emissions were much higher than those from the forests on nutrient rich peat soils. Abandoned and afforested peat extraction sites emitted more N2O, (2.4?±?2.1?kg?N?ha?1), than the areas under active peat extraction (0.7?±?0.5?kg?N?ha?1). Emissions outside the growing season contributed significantly, 40% on an average, to the annual emissions. The DNDC model overestimated N2O emission rates during the growing season and indicated no emissions during winter. The differences in the N2O emission rates were not associated with the age of the land use change, vegetation characteristics, peat depth or peat bulk density. The highest N2O emissions occurred when the soil C:N ratio was below 20 with a significant variability within the measured C:N range (13–27). Low soil pH, high nitrate availability and water table depth (50–70?cm) were also associated with high N2O emissions. Mineral soil has been added to most of the soils studied here to improve the fertility and this may have an impact on the N2O emissions. We infer from the multi-site dataset presented in this paper that afforestation is not necessarily an efficient way to reduce N2O emissions from drained boreal organic fields. 相似文献